GSM40806
EPREDICT : 2007-03-28 13:08:52 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40806
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40806:GSM40806
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.636701 p=0.000001
9626069_80_rc Human papillomavirus type 18 Papillomaviridae 41688 0.034310 0.030247
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 39143 0.032215 0.031469
9626069_263_rc Human papillomavirus type 18 Papillomaviridae 30715 0.025279 0.031664
9626069_350_P70_rc Human papillomavirus type 18 Papillomaviridae 20753 0.017080 0.035901
9626069_80 Human papillomavirus type 18 Papillomaviridae 22282 0.018338 0.030247
10593 Human papillomavirus type 45 s=0.215851 p=0.000176
9627356_269 Human papillomavirus type 45 Papillomaviridae 13593 0.011187 0.030872
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 39143 0.032215 0.007905
9626069_80_rc Human papillomavirus type 18 Papillomaviridae 41688 0.034310 0.006910
9627356_269_rc Human papillomavirus type 45 Papillomaviridae 8960 0.007374 0.030872
9627356_263_rc Human papillomavirus type 45 Papillomaviridae 7445 0.006127 0.036976
10580 Human papillomavirus type 11 s=0.081243 p=0.000747
9627090_269_rc Human papillomavirus type 11 Papillomaviridae 7795 0.006415 0.037951
9626069_263_rc Human papillomavirus type 18 Papillomaviridae 30715 0.025279 0.004557
9627090_269 Human papillomavirus type 11 Papillomaviridae 3325 0.002737 0.037951
9628412_270 Human papillomavirus type 6a Papillomaviridae 5459 0.004493 0.016010
9626069_263 Human papillomavirus type 18 Papillomaviridae 18561 0.015276 0.004557
37115 Human papillomavirus type 59 s=0.075007 p=0.000175
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 12974 0.010678 0.030317
9627962_252_rc Human papillomavirus type 59 Papillomaviridae 6641 0.005466 0.051293
9627962_252 Human papillomavirus type 59 Papillomaviridae 6182 0.005088 0.051293
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 39143 0.032215 0.007122
9626069_252 Human papillomavirus type 18 Papillomaviridae 4929 0.004057 0.030317
10586 Human papillomavirus type 33 s=0.066753 p=0.000430
9627118_263 Human papillomavirus type 33 Papillomaviridae 12669 0.010427 0.029086
9627118_263_rc Human papillomavirus type 33 Papillomaviridae 11356 0.009346 0.029086
9626069_263_rc Human papillomavirus type 18 Papillomaviridae 30715 0.025279 0.003138
9626069_263 Human papillomavirus type 18 Papillomaviridae 18561 0.015276 0.003138
9628412_270 Human papillomavirus type 6a Papillomaviridae 5459 0.004493 0.008175
Family: Siphoviridae
196242 Phage phi 4795 s=0.033320 p=0.017054
20065797_1965 Stx2 converting bacteriophage I Siphoviridae 10108 0.008319 0.032903
9634155_1333 Bacteriophage HK97 Siphoviridae 3628 0.002986 0.024022
9632466_695 Bacteriophage 933W Siphoviridae 2367 0.001948 0.035568
9632466_695_rc Bacteriophage 933W Siphoviridae 1030 0.000848 0.035568
20065797_1965_rc Stx2 converting bacteriophage I Siphoviridae 800 0.000658 0.032903
Family: NA
222464 Cotton leaf curl Kokhran virus s=0.029508 p=0.108923
20564177_88_rc Chino del tomate virus Geminiviridae 2553 0.002101 0.007670
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1618 0.001332 0.007528
21218470_68_rc Tomato leaf curl Karnataka virus Geminiviridae 1946 0.001602 0.006196
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 1629 0.001341 0.007317
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1890 0.001555 0.006085
207697 Croton yellow vein mosaic virus s=0.029396 p=0.090391
21218470_68_rc Tomato leaf curl Karnataka virus Geminiviridae 1946 0.001602 0.009059
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 1629 0.001341 0.009817
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1618 0.001332 0.009546
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1890 0.001555 0.007716
21165975_58_rc Tomato leaf curl Bangalore virus Geminiviridae 1694 0.001394 0.007417
53010 Cotton leaf curl virus s=0.028687 p=0.110459
16507262_57_rc Cotton leaf curl virus Geminiviridae 1674 0.001378 0.014580
20564177_88_rc Chino del tomate virus Geminiviridae 2553 0.002101 0.007514
16507262_57 Cotton leaf curl virus Geminiviridae 981 0.000807 0.014580
21218470_68_rc Tomato leaf curl Karnataka virus Geminiviridae 1946 0.001602 0.007122
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1890 0.001555 0.006248
Family: Tymoviridae
107950 Chayote mosaic tymovirus s=0.028068 p=0.053465
11067737_200_rc Chayote mosaic tymovirus Tymoviridae 6198 0.005101 0.088710
11067737_131 Chayote mosaic tymovirus Tymoviridae 2513 0.002068 0.085153
11067737_200 Chayote mosaic tymovirus Tymoviridae 287 0.000236 0.088710
11067737_182_rc Chayote mosaic tymovirus Tymoviridae 146 0.000120 0.086774
11067737_115_rc Chayote mosaic tymovirus Tymoviridae 146 0.000120 0.074644
Family: Nanoviridae
36772 Subterranean clover stunt virus s=0.022512 p=0.006679
20530230_3 Subterranean clover stunt virus Nanoviridae 2342 0.001928 0.277114
20530226_3 Subterranean clover stunt virus Nanoviridae 1520 0.001251 0.293729
20530232_3 Subterranean clover stunt virus Nanoviridae 874 0.000719 0.286285
20530232_1 Subterranean clover stunt virus Nanoviridae 21 0.000017 0.040172
20177473_4 Milk vetch dwarf virus Nanoviridae 11 0.000009 0.031264
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.018820 p=0.076115
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 2392 0.001969 0.228244
16507983_187 Human endogenous retrovirus K115 Retroviridae 1968 0.001620 0.130329
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 1473 0.001212 0.130329
16507983_164 Human endogenous retrovirus K115 Retroviridae 145 0.000119 0.255549
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 66 0.000054 0.255549
Iteration: 2
Family: Siphoviridae
196242 Phage phi 4795 s=0.053688 p=0.006323
20065797_1965 Stx2 converting bacteriophage I Siphoviridae 10108 0.013770 0.032903
9634155_1333 Bacteriophage HK97 Siphoviridae 3628 0.004942 0.024022
9632466_695 Bacteriophage 933W Siphoviridae 2367 0.003224 0.035568
9632466_695_rc Bacteriophage 933W Siphoviridae 1030 0.001403 0.035568
20065797_1965_rc Stx2 converting bacteriophage I Siphoviridae 800 0.001090 0.032903
Family: NA
222464 Cotton leaf curl Kokhran virus s=0.047548 p=0.057838
20564177_88_rc Chino del tomate virus Geminiviridae 2553 0.003478 0.007670
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1618 0.002204 0.007528
21218470_68_rc Tomato leaf curl Karnataka virus Geminiviridae 1946 0.002651 0.006196
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 1629 0.002219 0.007317
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1890 0.002575 0.006085
207697 Croton yellow vein mosaic virus s=0.047365 p=0.047217
21218470_68_rc Tomato leaf curl Karnataka virus Geminiviridae 1946 0.002651 0.009059
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 1629 0.002219 0.009817
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1618 0.002204 0.009546
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1890 0.002575 0.007716
21165975_58_rc Tomato leaf curl Bangalore virus Geminiviridae 1694 0.002308 0.007417
53010 Cotton leaf curl virus s=0.046227 p=0.058608
16507262_57_rc Cotton leaf curl virus Geminiviridae 1674 0.002280 0.014580
20564177_88_rc Chino del tomate virus Geminiviridae 2553 0.003478 0.007514
16507262_57 Cotton leaf curl virus Geminiviridae 981 0.001336 0.014580
21218470_68_rc Tomato leaf curl Karnataka virus Geminiviridae 1946 0.002651 0.007122
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1890 0.002575 0.006248
Family: Papillomaviridae
10618 Human papillomavirus type 52 s=0.046111 p=0.008507
9627370_239 Human papillomavirus type 52 Papillomaviridae 9982 0.013598 0.052341
9627370_145_rc Human papillomavirus type 52 Papillomaviridae 61 0.000083 0.038651
9627370_239_rc Human papillomavirus type 52 Papillomaviridae 36 0.000049 0.052341
9627155_258 Human papillomavirus type 51 Papillomaviridae 339 0.000462 0.004517
9627370_265 Human papillomavirus type 52 Papillomaviridae 25 0.000034 0.055596
Family: Tymoviridae
107950 Chayote mosaic tymovirus s=0.045242 p=0.026265
11067737_200_rc Chayote mosaic tymovirus Tymoviridae 6198 0.008443 0.088710
11067737_131 Chayote mosaic tymovirus Tymoviridae 2513 0.003423 0.085153
11067737_200 Chayote mosaic tymovirus Tymoviridae 287 0.000391 0.088710
11067737_182_rc Chayote mosaic tymovirus Tymoviridae 146 0.000199 0.086774
11067737_115_rc Chayote mosaic tymovirus Tymoviridae 146 0.000199 0.074644
Family: Nanoviridae
36772 Subterranean clover stunt virus s=0.036281 p=0.002739
20530230_3 Subterranean clover stunt virus Nanoviridae 2342 0.003190 0.277114
20530226_3 Subterranean clover stunt virus Nanoviridae 1520 0.002071 0.293729
20530232_3 Subterranean clover stunt virus Nanoviridae 874 0.001191 0.286285
20530232_1 Subterranean clover stunt virus Nanoviridae 21 0.000029 0.040172
20177473_4 Milk vetch dwarf virus Nanoviridae 11 0.000015 0.031264
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.030340 p=0.046467
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 2392 0.003259 0.228244
16507983_187 Human endogenous retrovirus K115 Retroviridae 1968 0.002681 0.130329
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 1473 0.002007 0.130329
16507983_164 Human endogenous retrovirus K115 Retroviridae 145 0.000198 0.255549
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 66 0.000090 0.255549
GSM40807
EPREDICT : 2007-03-28 13:13:26 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40807
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40807:GSM40807
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.495550 p=0.000002
9626069_80 Human papillomavirus type 18 Papillomaviridae 65437 0.047179 0.030247
9626069_269 Human papillomavirus type 18 Papillomaviridae 65436 0.047179 0.028366
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 46261 0.033354 0.035142
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 33486 0.024143 0.036179
9627356_269 Human papillomavirus type 45 Papillomaviridae 64327 0.046379 0.011945
10593 Human papillomavirus type 45 s=0.243890 p=0.000122
9627356_269 Human papillomavirus type 45 Papillomaviridae 64327 0.046379 0.030872
9626069_269 Human papillomavirus type 18 Papillomaviridae 65436 0.047179 0.012905
9626069_80 Human papillomavirus type 18 Papillomaviridae 65437 0.047179 0.006910
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 33486 0.024143 0.009866
9626069_291_P70 Human papillomavirus type 18 Papillomaviridae 16701 0.012041 0.014299
10580 Human papillomavirus type 11 s=0.078745 p=0.000816
9627090_269 Human papillomavirus type 11 Papillomaviridae 10011 0.007218 0.037951
9628412_270 Human papillomavirus type 6a Papillomaviridae 16631 0.011991 0.016010
9633484_270 Human papillomavirus type 6 Papillomaviridae 14799 0.010670 0.016010
9627356_269 Human papillomavirus type 45 Papillomaviridae 64327 0.046379 0.003645
9626053_270 Human papillomavirus type 6b Papillomaviridae 11309 0.008154 0.015912
10600 Human papillomavirus type 6b s=0.069579 p=0.000902
9628412_270 Human papillomavirus type 6a Papillomaviridae 16631 0.011991 0.023735
9633484_270 Human papillomavirus type 6 Papillomaviridae 14799 0.010670 0.023735
9626053_270 Human papillomavirus type 6b Papillomaviridae 11309 0.008154 0.023639
9627118_263 Human papillomavirus type 33 Papillomaviridae 30061 0.021674 0.007028
9627090_269 Human papillomavirus type 11 Papillomaviridae 10011 0.007218 0.005745
37122 Human papillomavirus type 6a s=0.069388 p=0.001225
9628412_270 Human papillomavirus type 6a Papillomaviridae 16631 0.011991 0.023541
9633484_270 Human papillomavirus type 6 Papillomaviridae 14799 0.010670 0.023541
9626053_270 Human papillomavirus type 6b Papillomaviridae 11309 0.008154 0.023446
9627118_263 Human papillomavirus type 33 Papillomaviridae 30061 0.021674 0.006971
9627090_269 Human papillomavirus type 11 Papillomaviridae 10011 0.007218 0.005698
Family: Potyviridae
12211 Plum pox virus s=0.025013 p=0.038951
9626508_183 Plum pox virus Potyviridae 13074 0.009426 0.090207
9626508_363 Plum pox virus Potyviridae 161 0.000116 0.084943
9626508_183_rc Plum pox virus Potyviridae 112 0.000081 0.090207
9626508_363_rc Plum pox virus Potyviridae 28 0.000020 0.084943
9626508_310 Plum pox virus Potyviridae 22 0.000016 0.096180
Family: NA
9606 Homo sapiens s=0.019054 p=0.072748
11228730_382 Human endogenous retrovirus 15 Retroviridae 6582 0.004746 0.102523
11228730_388 Human endogenous retrovirus 15 Retroviridae 2156 0.001554 0.100253
11228730_382_rc Human endogenous retrovirus 15 Retroviridae 587 0.000423 0.102523
11228730_356 Human endogenous retrovirus 15 Retroviridae 364 0.000262 0.111858
11228730_356_rc Human endogenous retrovirus 15 Retroviridae 245 0.000177 0.111858
Family: Herpesviridae
28304 Rat cytomegalovirus s=0.014114 p=0.169086
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 6338 0.004570 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 2906 0.002095 0.032243
14250967_5952 Tupaiid herpesvirus 1 Herpesviridae 1533 0.001105 0.003816
14250967_5770_rc Tupaiid herpesvirus 1 Herpesviridae 780 0.000562 0.005993
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 142 0.000102 0.031290
79700 Rat cytomegalovirus s=0.014114 p=0.169086
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 6338 0.004570 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 2906 0.002095 0.032243
14250967_5952 Tupaiid herpesvirus 1 Herpesviridae 1533 0.001105 0.003816
14250967_5770_rc Tupaiid herpesvirus 1 Herpesviridae 780 0.000562 0.005993
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 142 0.000102 0.031290
10401 Ictalurid herpesvirus 1 s=0.012322 p=0.084406
9626821_872 Ictalurid herpesvirus 1 Herpesviridae 3731 0.002690 0.055524
9626821_1503 Ictalurid herpesvirus 1 Herpesviridae 3054 0.002202 0.063848
9626821_5019 Ictalurid herpesvirus 1 Herpesviridae 408 0.000294 0.066097
9626821_1503_rc Ictalurid herpesvirus 1 Herpesviridae 394 0.000284 0.063848
9626821_1079_rc Ictalurid herpesvirus 1 Herpesviridae 691 0.000498 0.018926
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.010945 p=0.125129
16507983_187 Human endogenous retrovirus K115 Retroviridae 2050 0.001478 0.130329
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 1591 0.001147 0.130329
16507983_164 Human endogenous retrovirus K115 Retroviridae 668 0.000482 0.255549
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 550 0.000397 0.255549
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 423 0.000305 0.228244
Family: Baculoviridae
10449 Lymantria dispar nucleopolyhedrovirus s=0.008813 p=0.158615
9630966_37_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 1959 0.001412 0.041617
9630966_37 Lymantria dispar nucleopolyhedroviru Baculoviridae 1621 0.001169 0.041617
9630966_5576_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 818 0.000590 0.055073
9630816_4373 Bombyx mori nucleopolyhedrovirus Baculoviridae 1430 0.001031 0.012868
9629732_5440 Equid herpesvirus 4 Herpesviridae 1567 0.001130 0.003989
Iteration: 2
Family: Potyviridae
12211 Plum pox virus s=0.043122 p=0.017847
9626508_183 Plum pox virus Potyviridae 13074 0.016583 0.090207
9626508_363 Plum pox virus Potyviridae 161 0.000204 0.084943
9626508_183_rc Plum pox virus Potyviridae 112 0.000142 0.090207
9626508_363_rc Plum pox virus Potyviridae 28 0.000036 0.084943
9626508_310 Plum pox virus Potyviridae 22 0.000028 0.096180
Family: Papillomaviridae
10618 Human papillomavirus type 52 s=0.033799 p=0.015427
9627370_239 Human papillomavirus type 52 Papillomaviridae 8984 0.011395 0.052341
9627370_145_rc Human papillomavirus type 52 Papillomaviridae 1481 0.001879 0.038651
9627370_239_rc Human papillomavirus type 52 Papillomaviridae 75 0.000095 0.052341
9627370_265_rc Human papillomavirus type 52 Papillomaviridae 18 0.000023 0.055596
9627349_1 Human papillomavirus type 40 Papillomaviridae 127 0.000161 0.006812
Family: NA
9606 Homo sapiens s=0.032848 p=0.037871
11228730_382 Human endogenous retrovirus 15 Retroviridae 6582 0.008349 0.102523
11228730_388 Human endogenous retrovirus 15 Retroviridae 2156 0.002735 0.100253
11228730_382_rc Human endogenous retrovirus 15 Retroviridae 587 0.000745 0.102523
11228730_356 Human endogenous retrovirus 15 Retroviridae 364 0.000462 0.111858
11228730_356_rc Human endogenous retrovirus 15 Retroviridae 245 0.000311 0.111858
Family: Herpesviridae
28304 Rat cytomegalovirus s=0.024334 p=0.085210
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 6338 0.008039 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 2906 0.003686 0.032243
14250967_5952 Tupaiid herpesvirus 1 Herpesviridae 1533 0.001944 0.003816
14250967_5770_rc Tupaiid herpesvirus 1 Herpesviridae 780 0.000989 0.005993
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 142 0.000180 0.031290
79700 Rat cytomegalovirus s=0.024334 p=0.085210
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 6338 0.008039 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 2906 0.003686 0.032243
14250967_5952 Tupaiid herpesvirus 1 Herpesviridae 1533 0.001944 0.003816
14250967_5770_rc Tupaiid herpesvirus 1 Herpesviridae 780 0.000989 0.005993
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 142 0.000180 0.031290
10401 Ictalurid herpesvirus 1 s=0.021243 p=0.037806
9626821_872 Ictalurid herpesvirus 1 Herpesviridae 3731 0.004732 0.055524
9626821_1503 Ictalurid herpesvirus 1 Herpesviridae 3054 0.003874 0.063848
9626821_5019 Ictalurid herpesvirus 1 Herpesviridae 408 0.000518 0.066097
9626821_1503_rc Ictalurid herpesvirus 1 Herpesviridae 394 0.000500 0.063848
9626821_1079_rc Ictalurid herpesvirus 1 Herpesviridae 691 0.000876 0.018926
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.018864 p=0.075941
16507983_187 Human endogenous retrovirus K115 Retroviridae 2050 0.002600 0.130329
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 1591 0.002018 0.130329
16507983_164 Human endogenous retrovirus K115 Retroviridae 668 0.000847 0.255549
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 550 0.000698 0.255549
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 423 0.000537 0.228244
Family: Baculoviridae
10449 Lymantria dispar nucleopolyhedrovirus s=0.015191 p=0.078975
9630966_37_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 1959 0.002485 0.041617
9630966_37 Lymantria dispar nucleopolyhedroviru Baculoviridae 1621 0.002056 0.041617
9630966_5576_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 818 0.001038 0.055073
9630816_4373 Bombyx mori nucleopolyhedrovirus Baculoviridae 1430 0.001814 0.012868
9629732_5440 Equid herpesvirus 4 Herpesviridae 1567 0.001988 0.003989
GSM40808
EPREDICT : 2007-03-28 13:17:46 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40808
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40808:GSM40808
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.264795 p=0.000021
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 9400 0.025565 0.036179
9626069_80 Human papillomavirus type 18 Papillomaviridae 10564 0.028731 0.030247
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 8633 0.023479 0.035142
9626069_81 Human papillomavirus type 18 Papillomaviridae 6476 0.017613 0.031469
9626069_350_P70_rc Human papillomavirus type 18 Papillomaviridae 3634 0.009883 0.035901
10593 Human papillomavirus type 45 s=0.071654 p=0.003334
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 9400 0.025565 0.009866
9626069_80 Human papillomavirus type 18 Papillomaviridae 10564 0.028731 0.006910
9626069_81 Human papillomavirus type 18 Papillomaviridae 6476 0.017613 0.007905
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 8633 0.023479 0.004794
9626069_269 Human papillomavirus type 18 Papillomaviridae 2998 0.008154 0.012905
37115 Human papillomavirus type 59 s=0.022107 p=0.005116
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 4202 0.011428 0.030317
9626069_81 Human papillomavirus type 18 Papillomaviridae 6476 0.017613 0.007122
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 2823 0.007678 0.007122
9626069_252 Human papillomavirus type 18 Papillomaviridae 542 0.001474 0.030317
9627962_252_rc Human papillomavirus type 59 Papillomaviridae 166 0.000451 0.051293
44028 Human papillomavirus type 74 s=0.017021 p=0.043948
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 4202 0.011428 0.011036
9626069_269 Human papillomavirus type 18 Papillomaviridae 2998 0.008154 0.005564
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 2365 0.006432 0.005564
9626069_252 Human papillomavirus type 18 Papillomaviridae 542 0.001474 0.011036
9627305_81 Human papillomavirus type 26 Papillomaviridae 545 0.001482 0.009812
39457 Human papillomavirus type 70 s=0.016396 p=0.008963
9626069_80 Human papillomavirus type 18 Papillomaviridae 10564 0.028731 0.005861
9626069_81 Human papillomavirus type 18 Papillomaviridae 6476 0.017613 0.004751
9626069_80_rc Human papillomavirus type 18 Papillomaviridae 2819 0.007667 0.005861
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 2823 0.007678 0.004751
9627165_253 Human papillomavirus type 39 Papillomaviridae 113 0.000307 0.009189
Family: Picornaviridae
138953 Poliovirus s=0.011679 p=0.112058
12408699_21 Poliovirus Picornaviridae 395 0.001074 0.030078
12408699_21_rc Poliovirus Picornaviridae 292 0.000794 0.030078
12408699_197_rc Poliovirus Picornaviridae 267 0.000726 0.024182
12408699_24 Poliovirus Picornaviridae 227 0.000617 0.024902
12408699_207 Poliovirus Picornaviridae 213 0.000579 0.026274
Family: NA
222464 Cotton leaf curl Kokhran virus s=0.009252 p=0.343289
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 221 0.000601 0.007317
20564177_88_rc Chino del tomate virus Geminiviridae 209 0.000568 0.007670
16507262_57 Cotton leaf curl virus Geminiviridae 230 0.000626 0.006342
9629636_87_rc Tomato mottle Taino virus Geminiviridae 228 0.000620 0.006180
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 258 0.000702 0.004909
53010 Cotton leaf curl virus s=0.009108 p=0.344374
16507262_57 Cotton leaf curl virus Geminiviridae 230 0.000626 0.014580
16507262_57_rc Cotton leaf curl virus Geminiviridae 161 0.000438 0.014580
9629636_87_rc Tomato mottle Taino virus Geminiviridae 228 0.000620 0.007104
20564177_88_rc Chino del tomate virus Geminiviridae 209 0.000568 0.007514
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 258 0.000702 0.005642
223314 Sida golden mosaic Florida virus s=0.009057 p=0.305775
20564177_88_rc Chino del tomate virus Geminiviridae 209 0.000568 0.010036
9629636_52 Tomato mottle Taino virus Geminiviridae 178 0.000484 0.011746
10518470_58 Tomato rugose mosaic virus Geminiviridae 219 0.000596 0.009341
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 258 0.000702 0.005766
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 226 0.000615 0.006496
207697 Croton yellow vein mosaic virus s=0.009023 p=0.304631
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 221 0.000601 0.009817
16507262_57 Cotton leaf curl virus Geminiviridae 230 0.000626 0.007085
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 226 0.000615 0.006481
21165975_58_rc Tomato leaf curl Bangalore virus Geminiviridae 186 0.000506 0.007417
10518470_58 Tomato rugose mosaic virus Geminiviridae 219 0.000596 0.006135
208177 Tomato leaf curl Vietnam virus s=0.008995 p=0.342108
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 226 0.000615 0.010691
10518470_58 Tomato rugose mosaic virus Geminiviridae 219 0.000596 0.008964
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 221 0.000601 0.008255
9629636_52 Tomato mottle Taino virus Geminiviridae 178 0.000484 0.006457
9630671_66 Indian cassava mosaic virus Geminiviridae 166 0.000451 0.006787
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.006801 p=0.506327
HCMVUL119_359 Human herpesvirus 5 Herpesviridae 440 0.001197 0.004414
HCMVIRL11_517 Human herpesvirus 5 Herpesviridae 327 0.000889 0.004536
HCMVUL95_185 Human herpesvirus 5 Herpesviridae 125 0.000340 0.005059
HCMVUL91_224 Human herpesvirus 5 Herpesviridae 98 0.000267 0.005359
HCMVUL111_74 Human herpesvirus 5 Herpesviridae 108 0.000294 0.004811
188763 Chimpanzee cytomegalovirus s=0.005932 p=0.441042
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 459 0.001248 0.024872
20026600_3085_rc Pongine herpesvirus 4 Herpesviridae 119 0.000324 0.026310
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 87 0.000237 0.026354
20026600_5589 Pongine herpesvirus 4 Herpesviridae 62 0.000169 0.026354
14250967_5943 Tupaiid herpesvirus 1 Herpesviridae 104 0.000283 0.008178
10298 Human herpesvirus 1 s=0.005838 p=0.485749
9629378_5995_rc Human herpesvirus 1 Herpesviridae 381 0.001036 0.020741
9629378_193 Human herpesvirus 1 Herpesviridae 290 0.000789 0.019798
9629378_4861 Human herpesvirus 1 Herpesviridae 149 0.000405 0.019798
9629378_4860 Human herpesvirus 1 Herpesviridae 84 0.000228 0.020550
9629378_697_P70_rc Human herpesvirus 1 Herpesviridae 67 0.000182 0.016929
10397 Tupaia herpesvirus s=0.004507 p=0.429857
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 459 0.001248 0.016795
14250967_5943 Tupaiid herpesvirus 1 Herpesviridae 104 0.000283 0.048922
14250967_5770 Tupaiid herpesvirus 1 Herpesviridae 81 0.000220 0.041390
20026600_3085_rc Pongine herpesvirus 4 Herpesviridae 119 0.000324 0.017989
14250967_5952 Tupaiid herpesvirus 1 Herpesviridae 40 0.000109 0.048204
28304 Rat cytomegalovirus s=0.004141 p=0.488873
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 132 0.000359 0.031290
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 115 0.000313 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 84 0.000228 0.032243
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 459 0.001248 0.004240
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 69 0.000188 0.027888
Family: Polyomaviridae
10633 Simian virus 40 s=0.002868 p=0.460023
9628421_25 Simian virus 40 Polyomaviridae 108 0.000294 0.088121
9628421_23 Simian virus 40 Polyomaviridae 107 0.000291 0.082917
9628421_25_rc Simian virus 40 Polyomaviridae 75 0.000204 0.088121
9628642_23 JC virus Polyomaviridae 83 0.000226 0.032633
9628421_86 Simian virus 40 Polyomaviridae 28 0.000076 0.071104
Family: Baculoviridae
10449 Lymantria dispar nucleopolyhedrovirus s=0.002770 p=0.450365
9630966_2622_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 111 0.000302 0.052547
9630966_2622 Lymantria dispar nucleopolyhedroviru Baculoviridae 39 0.000106 0.052547
9630966_1120 Lymantria dispar nucleopolyhedroviru Baculoviridae 37 0.000101 0.045945
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 109 0.000296 0.011741
9630966_5576_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 20 0.000054 0.055073
Iteration: 2
Family: Picornaviridae
138953 Poliovirus s=0.012501 p=0.100728
12408699_21 Poliovirus Picornaviridae 395 0.001342 0.030078
12408699_21_rc Poliovirus Picornaviridae 292 0.000992 0.030078
12408699_197_rc Poliovirus Picornaviridae 267 0.000907 0.024182
12408699_24 Poliovirus Picornaviridae 227 0.000771 0.024902
12408699_207 Poliovirus Picornaviridae 213 0.000724 0.026274
Family: NA
222464 Cotton leaf curl Kokhran virus s=0.009901 p=0.325653
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 221 0.000751 0.007317
20564177_88_rc Chino del tomate virus Geminiviridae 209 0.000710 0.007670
16507262_57 Cotton leaf curl virus Geminiviridae 230 0.000782 0.006342
9629636_87_rc Tomato mottle Taino virus Geminiviridae 228 0.000775 0.006180
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 258 0.000877 0.004909
53010 Cotton leaf curl virus s=0.009747 p=0.326634
16507262_57 Cotton leaf curl virus Geminiviridae 230 0.000782 0.014580
16507262_57_rc Cotton leaf curl virus Geminiviridae 161 0.000547 0.014580
9629636_87_rc Tomato mottle Taino virus Geminiviridae 228 0.000775 0.007104
20564177_88_rc Chino del tomate virus Geminiviridae 209 0.000710 0.007514
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 258 0.000877 0.005642
223314 Sida golden mosaic Florida virus s=0.009691 p=0.289191
20564177_88_rc Chino del tomate virus Geminiviridae 209 0.000710 0.010036
9629636_52 Tomato mottle Taino virus Geminiviridae 178 0.000605 0.011746
10518470_58 Tomato rugose mosaic virus Geminiviridae 219 0.000744 0.009341
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 258 0.000877 0.005766
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 226 0.000768 0.006496
207697 Croton yellow vein mosaic virus s=0.009655 p=0.288236
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 221 0.000751 0.009817
16507262_57 Cotton leaf curl virus Geminiviridae 230 0.000782 0.007085
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 226 0.000768 0.006481
21165975_58_rc Tomato leaf curl Bangalore virus Geminiviridae 186 0.000632 0.007417
10518470_58 Tomato rugose mosaic virus Geminiviridae 219 0.000744 0.006135
208177 Tomato leaf curl Vietnam virus s=0.009626 p=0.324779
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 226 0.000768 0.010691
10518470_58 Tomato rugose mosaic virus Geminiviridae 219 0.000744 0.008964
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 221 0.000751 0.008255
9629636_52 Tomato mottle Taino virus Geminiviridae 178 0.000605 0.006457
9630671_66 Indian cassava mosaic virus Geminiviridae 166 0.000564 0.006787
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.007277 p=0.485777
HCMVUL119_359 Human herpesvirus 5 Herpesviridae 440 0.001495 0.004414
HCMVIRL11_517 Human herpesvirus 5 Herpesviridae 327 0.001111 0.004536
HCMVUL95_185 Human herpesvirus 5 Herpesviridae 125 0.000425 0.005059
HCMVUL91_224 Human herpesvirus 5 Herpesviridae 98 0.000333 0.005359
HCMVUL111_74 Human herpesvirus 5 Herpesviridae 108 0.000367 0.004811
188763 Chimpanzee cytomegalovirus s=0.006346 p=0.420888
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 459 0.001560 0.024872
20026600_3085_rc Pongine herpesvirus 4 Herpesviridae 119 0.000404 0.026310
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 87 0.000296 0.026354
20026600_5589 Pongine herpesvirus 4 Herpesviridae 62 0.000211 0.026354
14250967_5943 Tupaiid herpesvirus 1 Herpesviridae 104 0.000353 0.008178
10298 Human herpesvirus 1 s=0.006248 p=0.466192
9629378_5995_rc Human herpesvirus 1 Herpesviridae 381 0.001295 0.020741
9629378_193 Human herpesvirus 1 Herpesviridae 290 0.000985 0.019798
9629378_4861 Human herpesvirus 1 Herpesviridae 149 0.000506 0.019798
9629378_4860 Human herpesvirus 1 Herpesviridae 84 0.000285 0.020550
9629378_697_P70_rc Human herpesvirus 1 Herpesviridae 67 0.000228 0.016929
10397 Tupaia herpesvirus s=0.004822 p=0.409392
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 459 0.001560 0.016795
14250967_5943 Tupaiid herpesvirus 1 Herpesviridae 104 0.000353 0.048922
14250967_5770 Tupaiid herpesvirus 1 Herpesviridae 81 0.000275 0.041390
20026600_3085_rc Pongine herpesvirus 4 Herpesviridae 119 0.000404 0.017989
14250967_5952 Tupaiid herpesvirus 1 Herpesviridae 40 0.000136 0.048204
28304 Rat cytomegalovirus s=0.004429 p=0.468563
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 132 0.000449 0.031290
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 115 0.000391 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 84 0.000285 0.032243
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 459 0.001560 0.004240
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 69 0.000234 0.027888
Family: Polyomaviridae
10633 Simian virus 40 s=0.003071 p=0.442244
9628421_25 Simian virus 40 Polyomaviridae 108 0.000367 0.088121
9628421_23 Simian virus 40 Polyomaviridae 107 0.000364 0.082917
9628421_25_rc Simian virus 40 Polyomaviridae 75 0.000255 0.088121
9628642_23 JC virus Polyomaviridae 83 0.000282 0.032633
9628421_86 Simian virus 40 Polyomaviridae 28 0.000095 0.071104
Family: Papillomaviridae
10609 Human papillomavirus type 25 s=0.003015 p=0.477257
9627298_177 Human papillomavirus type 25 Papillomaviridae 126 0.000428 0.029232
9627298_177_rc Human papillomavirus type 25 Papillomaviridae 62 0.000211 0.029232
9627298_108_rc Human papillomavirus type 25 Papillomaviridae 41 0.000139 0.036776
9627298_108 Human papillomavirus type 25 Papillomaviridae 29 0.000099 0.036776
9627396_171 Human papillomavirus type 9 Papillomaviridae 128 0.000435 0.005046
Family: Baculoviridae
10449 Lymantria dispar nucleopolyhedrovirus s=0.002966 p=0.429970
9630966_2622_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 111 0.000377 0.052547
9630966_2622 Lymantria dispar nucleopolyhedroviru Baculoviridae 39 0.000133 0.052547
9630966_1120 Lymantria dispar nucleopolyhedroviru Baculoviridae 37 0.000126 0.045945
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 109 0.000370 0.011741
9630966_5576_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 20 0.000068 0.055073
GSM40809
EPREDICT : 2007-03-28 13:20:23 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40809
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40809:GSM40809
Iteration: 1
Family: Picornaviridae
123738 Enterovirus Yanbian 96-83csf s=0.276873 p=0.000094
21363125_18_rc Human echovirus 1 Picornaviridae 65489 0.025875 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65493 0.025877 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65492 0.025877 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65490 0.025876 0.012615
21363125_21_rc Human echovirus 1 Picornaviridae 65488 0.025875 0.008628
147712 Human rhinovirus B s=0.267815 p=0.000045
9626735_14_rc Human rhinovirus B Picornaviridae 65492 0.025877 0.024898
9626735_16_rc Human rhinovirus B Picornaviridae 65492 0.025877 0.023121
9626735_18_rc Human rhinovirus B Picornaviridae 65489 0.025875 0.022396
9626735_22_rc Human rhinovirus B Picornaviridae 65490 0.025876 0.019391
9626735_10_rc Human rhinovirus B Picornaviridae 65492 0.025877 0.019131
12090 Human enterovirus D s=0.258894 p=0.000043
9626436_18_rc Human enterovirus 70 Picornaviridae 65492 0.025877 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65491 0.025876 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65492 0.025877 0.018469
12408699_21_rc Poliovirus Picornaviridae 65495 0.025878 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65493 0.025877 0.014212
138950 Human enterovirus C s=0.254504 p=0.000052
9626433_17_rc Human enterovirus C Picornaviridae 65492 0.025877 0.029244
9626433_285 Human enterovirus C Picornaviridae 65496 0.025878 0.026296
9626436_21_rc Human enterovirus 70 Picornaviridae 65491 0.025876 0.017668
9626436_18_rc Human enterovirus 70 Picornaviridae 65492 0.025877 0.015432
12408699_21_rc Poliovirus Picornaviridae 65495 0.025878 0.010914
46633 Human echovirus 1 s=0.253816 p=0.000134
21363125_21_rc Human echovirus 1 Picornaviridae 65488 0.025875 0.018603
21363125_18_rc Human echovirus 1 Picornaviridae 65489 0.025875 0.018139
21363125_23_rc Human echovirus 1 Picornaviridae 65494 0.025877 0.014342
9626677_18_rc Human enterovirus B Picornaviridae 65493 0.025877 0.011222
9627719_22_rc Human enterovirus A Picornaviridae 65490 0.025876 0.008849
Family: Flaviviridae
11085 Langat virus s=0.001394 p=0.630968
20260781_365_rc Langat virus Flaviviridae 1285 0.000508 0.068951
20260781_363_rc Langat virus Flaviviridae 116 0.000046 0.066462
20260781_316 Langat virus Flaviviridae 41 0.000016 0.071242
20260781_363 Langat virus Flaviviridae 31 0.000012 0.066462
20260781_403 Langat virus Flaviviridae 22 0.000009 0.063789
172148 Alkhurma virus s=0.001297 p=0.658317
20260781_365_rc Langat virus Flaviviridae 1285 0.000508 0.056839
9627244_363 Yellow fever virus Flaviviridae 159 0.000063 0.031316
9627244_51 Yellow fever virus Flaviviridae 138 0.000055 0.025054
20260779_361 Powassan virus Flaviviridae 124 0.000049 0.024744
20260779_361_rc Powassan virus Flaviviridae 110 0.000043 0.024744
Family: Retroviridae
33748 Primate T-lymphotropic virus 2 s=0.001238 p=0.804587
9629498_292_rc Simian T-lymphotropic virus 2 Retroviridae 692 0.000273 0.065223
9629498_113_rc Simian T-lymphotropic virus 2 Retroviridae 394 0.000156 0.046063
9629498_292 Simian T-lymphotropic virus 2 Retroviridae 125 0.000049 0.065223
9629498_294_rc Simian T-lymphotropic virus 2 Retroviridae 106 0.000042 0.056190
9629498_118_rc Simian T-lymphotropic virus 2 Retroviridae 55 0.000022 0.054274
Family: NA
169693 Okra yellow vein disease associated sequ s=0.000898 p=0.517450
22123919_1_rc OkLCV satDNA 27 Satellite Nuclei 659 0.000260 0.025583
22123920_1_rc OkLCV satDNA 3 Satellite Nuclei 569 0.000225 0.025583
22123917_1_rc OkLCV satDNA 10 Satellite Nuclei 492 0.000194 0.025583
22123920_1 OkLCV satDNA 3 Satellite Nuclei 28 0.000011 0.025583
16507269_51_rc Cotton leaf curl virus-associated DN Satellite Nuclei 21 0.000008 0.029354
186812 Okra leaf curl virus-associated sequence s=0.000882 p=0.526042
22123919_1_rc OkLCV satDNA 27 Satellite Nuclei 659 0.000260 0.025268
22123920_1_rc OkLCV satDNA 3 Satellite Nuclei 569 0.000225 0.025268
22123917_1_rc OkLCV satDNA 10 Satellite Nuclei 492 0.000194 0.025268
22123920_1 OkLCV satDNA 3 Satellite Nuclei 28 0.000011 0.025268
16507269_51_rc Cotton leaf curl virus-associated DN Satellite Nuclei 21 0.000008 0.024553
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.000865 p=0.943669
HCMVUL119_359 Human herpesvirus 5 Herpesviridae 1073 0.000424 0.004414
9625671_1904_rc Human herpesvirus 5 Herpesviridae 260 0.000103 0.005199
9625671_4716_rc Human herpesvirus 5 Herpesviridae 179 0.000071 0.004685
HCMVIRL7_24 Human herpesvirus 5 Herpesviridae 204 0.000081 0.004104
HCMVIRL11_517 Human herpesvirus 5 Herpesviridae 142 0.000056 0.004536
Family: Baculoviridae
10468 Helicoverpa zea single nucleocapsid nucl s=0.000862 p=0.455262
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 1412 0.000558 0.032120
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 33 0.000013 0.022542
18138257_1286_rc Helicoverpa zea single nucleocapsid Baculoviridae 15 0.000006 0.029894
15426271_1294_rc Helicoverpa armigera nuclear polyhed Baculoviridae 13 0.000005 0.032120
9630966_2622_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 129 0.000051 0.002973
Iteration: 2
Family: Picornaviridae
147712 Human rhinovirus B s=0.204520 p=0.000120
9626735_16_rc Human rhinovirus B Picornaviridae 65492 0.076316 0.023121
9626735_10_rc Human rhinovirus B Picornaviridae 65492 0.076316 0.019131
9626735_266 Human rhinovirus B Picornaviridae 65493 0.076318 0.018546
9626735_12_rc Human rhinovirus B Picornaviridae 53092 0.061867 0.019689
61098_20_rc Human rhinovirus sp. Picornaviridae 65494 0.076319 0.003229
12064 Bovine enterovirus s=0.075373 p=0.000013
9629892_273 Bovine enterovirus Picornaviridae 65495 0.076320 0.046745
9629892_25_rc Bovine enterovirus Picornaviridae 882 0.001028 0.041536
9629892_24_rc Bovine enterovirus Picornaviridae 311 0.000362 0.053881
9629892_288 Bovine enterovirus Picornaviridae 46 0.000054 0.051321
9629892_288_rc Bovine enterovirus Picornaviridae 37 0.000043 0.051321
147711 Human rhinovirus A s=0.069242 p=0.056590
4731888_25_rc Human rhinovirus sp. Picornaviridae 65492 0.076316 0.008428
4731887_43_rc Human rhinovirus sp. Picornaviridae 61510 0.071676 0.004566
61098_20_rc Human rhinovirus sp. Picornaviridae 65494 0.076319 0.003520
61098_16_rc Human rhinovirus sp. Picornaviridae 48254 0.056229 0.003202
61098_13_rc Human rhinovirus sp. Picornaviridae 18166 0.021168 0.008314
106966 Porcine enterovirus B s=0.012244 p=0.143171
9629634_270 Porcine enterovirus B Picornaviridae 13805 0.016087 0.023324
9629634_230_rc Porcine enterovirus B Picornaviridae 129 0.000150 0.026198
9629634_230 Porcine enterovirus B Picornaviridae 77 0.000090 0.026198
9629892_25_rc Bovine enterovirus Picornaviridae 882 0.001028 0.002199
9629634_261_rc Porcine enterovirus B Picornaviridae 36 0.000042 0.024788
138953 Poliovirus s=0.006841 p=0.232692
9626433_285 Human enterovirus C Picornaviridae 65496 0.076321 0.002419
12408699_288 Poliovirus Picornaviridae 437 0.000509 0.023661
9629892_25_rc Bovine enterovirus Picornaviridae 882 0.001028 0.003127
9629892_24_rc Bovine enterovirus Picornaviridae 311 0.000362 0.005431
12408699_207_rc Poliovirus Picornaviridae 25 0.000029 0.026274
Family: Flaviviridae
11085 Langat virus s=0.002633 p=0.447815
20260781_365_rc Langat virus Flaviviridae 1285 0.001497 0.068951
20260781_363_rc Langat virus Flaviviridae 116 0.000135 0.066462
20260781_316 Langat virus Flaviviridae 41 0.000048 0.071242
20260781_363 Langat virus Flaviviridae 31 0.000036 0.066462
20260781_403 Langat virus Flaviviridae 22 0.000026 0.063789
172148 Alkhurma virus s=0.002451 p=0.477257
20260781_365_rc Langat virus Flaviviridae 1285 0.001497 0.056839
9627244_363 Yellow fever virus Flaviviridae 159 0.000185 0.031316
9627244_51 Yellow fever virus Flaviviridae 138 0.000161 0.025054
20260779_361 Powassan virus Flaviviridae 124 0.000144 0.024744
20260779_361_rc Powassan virus Flaviviridae 110 0.000128 0.024744
Family: Retroviridae
33748 Primate T-lymphotropic virus 2 s=0.002343 p=0.655933
9629498_292_rc Simian T-lymphotropic virus 2 Retroviridae 692 0.000806 0.065223
9629498_113_rc Simian T-lymphotropic virus 2 Retroviridae 394 0.000459 0.046063
9629498_292 Simian T-lymphotropic virus 2 Retroviridae 125 0.000146 0.065223
9629498_294_rc Simian T-lymphotropic virus 2 Retroviridae 106 0.000124 0.056190
9629498_118_rc Simian T-lymphotropic virus 2 Retroviridae 55 0.000064 0.054274
Family: NA
169693 Okra yellow vein disease associated sequ s=0.001696 p=0.309679
22123919_1_rc OkLCV satDNA 27 Satellite Nuclei 659 0.000768 0.025583
22123920_1_rc OkLCV satDNA 3 Satellite Nuclei 569 0.000663 0.025583
22123917_1_rc OkLCV satDNA 10 Satellite Nuclei 492 0.000573 0.025583
22123920_1 OkLCV satDNA 3 Satellite Nuclei 28 0.000033 0.025583
16507269_51_rc Cotton leaf curl virus-associated DN Satellite Nuclei 21 0.000024 0.029354
186812 Okra leaf curl virus-associated sequence s=0.001666 p=0.317923
22123919_1_rc OkLCV satDNA 27 Satellite Nuclei 659 0.000768 0.025268
22123920_1_rc OkLCV satDNA 3 Satellite Nuclei 569 0.000663 0.025268
22123917_1_rc OkLCV satDNA 10 Satellite Nuclei 492 0.000573 0.025268
22123920_1 OkLCV satDNA 3 Satellite Nuclei 28 0.000033 0.025268
16507269_51_rc Cotton leaf curl virus-associated DN Satellite Nuclei 21 0.000024 0.024553
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.001621 p=0.866070
HCMVUL119_359 Human herpesvirus 5 Herpesviridae 1073 0.001250 0.004414
9625671_1904_rc Human herpesvirus 5 Herpesviridae 260 0.000303 0.005199
9625671_4716_rc Human herpesvirus 5 Herpesviridae 179 0.000209 0.004685
HCMVIRL7_24 Human herpesvirus 5 Herpesviridae 204 0.000238 0.004104
HCMVIRL11_517 Human herpesvirus 5 Herpesviridae 142 0.000165 0.004536
Family: Baculoviridae
10468 Helicoverpa zea single nucleocapsid nucl s=0.001616 p=0.219535
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 1412 0.001645 0.032120
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 33 0.000038 0.022542
18138257_1286_rc Helicoverpa zea single nucleocapsid Baculoviridae 15 0.000017 0.029894
15426271_1294_rc Helicoverpa armigera nuclear polyhed Baculoviridae 13 0.000015 0.032120
9630966_2622_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 129 0.000150 0.002973
GSM40810
EPREDICT : 2007-03-28 13:22:39 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40810
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40810:GSM40810
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.358024 p=0.002852
9627730_13_rc Human rhinovirus A Picornaviridae 65419 0.012709 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65427 0.012711 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65423 0.012710 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65419 0.012709 0.018468
9627730_2_rc Human rhinovirus A Picornaviridae 65438 0.012713 0.017563
12090 Human enterovirus D s=0.182659 p=0.000155
9626436_18_rc Human enterovirus 70 Picornaviridae 65443 0.012714 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65450 0.012715 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65431 0.012712 0.018469
12408699_21_rc Poliovirus Picornaviridae 65454 0.012716 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65446 0.012715 0.014212
123738 Enterovirus Yanbian 96-83csf s=0.175797 p=0.000439
21363125_18_rc Human echovirus 1 Picornaviridae 65427 0.012711 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65442 0.012714 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65437 0.012713 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65439 0.012713 0.012615
9627719_18_rc Human enterovirus A Picornaviridae 39060 0.007588 0.014625
138953 Poliovirus s=0.161220 p=0.000160
12408699_21_rc Poliovirus Picornaviridae 65454 0.012716 0.030078
12408699_18_rc Poliovirus Picornaviridae 65423 0.012710 0.028609
9626433_17_rc Human enterovirus C Picornaviridae 65431 0.012712 0.017603
9626436_21_rc Human enterovirus 70 Picornaviridae 65450 0.012715 0.013701
9626436_18_rc Human enterovirus 70 Picornaviridae 65443 0.012714 0.010854
46633 Human echovirus 1 s=0.159450 p=0.000628
21363125_21_rc Human echovirus 1 Picornaviridae 65427 0.012711 0.018603
21363125_18_rc Human echovirus 1 Picornaviridae 65427 0.012711 0.018139
9626677_18_rc Human enterovirus B Picornaviridae 65442 0.012714 0.011222
9627719_22_rc Human enterovirus A Picornaviridae 65439 0.012713 0.008849
21363125_23_rc Human echovirus 1 Picornaviridae 35307 0.006859 0.014342
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.043861 p=0.000253
17426217_138 Enterobacteria phage M13 Inoviridae 18766 0.003646 0.099983
17426217_128 Enterobacteria phage M13 Inoviridae 18112 0.003519 0.091108
17426217_25_rc Enterobacteria phage M13 Inoviridae 11589 0.002251 0.093522
17426217_142 Enterobacteria phage M13 Inoviridae 10496 0.002039 0.076782
17426217_128_rc Enterobacteria phage M13 Inoviridae 4791 0.000931 0.091108
Family: NA
89463 Sacbrood virus s=0.025824 p=0.002603
9632405_343_rc Sacbrood virus Iflavirus 48895 0.009499 0.063762
9632405_347_rc Sacbrood virus Iflavirus 399 0.000078 0.049549
9632405_349_rc Sacbrood virus Iflavirus 282 0.000055 0.042675
9632405_343 Sacbrood virus Iflavirus 110 0.000021 0.063762
9632405_167_rc Sacbrood virus Iflavirus 51 0.000010 0.052637
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.013048 p=0.017731
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 20059 0.003897 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 4068 0.000790 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 2704 0.000525 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 1851 0.000360 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 433 0.000084 0.041460
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.002170 p=0.697957
EBV_4323_rc Human herpesvirus 4 Herpesviridae 1894 0.000368 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 2132 0.000414 0.013853
EBV_6200_rc Human herpesvirus 4 Herpesviridae 1173 0.000228 0.014928
EBV_4540_rc Human herpesvirus 4 Herpesviridae 604 0.000117 0.014954
EBV_4535_rc Human herpesvirus 4 Herpesviridae 517 0.000100 0.017003
Family: Adenoviridae
130309 Human adenovirus F s=0.001038 p=0.798108
9626553_810_rc Human adenovirus F Adenoviridae 549 0.000107 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 507 0.000098 0.033578
9626553_793_rc Human adenovirus F Adenoviridae 247 0.000048 0.024888
9626553_711_rc Human adenovirus F Adenoviridae 208 0.000040 0.028761
9626187_754_rc Human adenovirus type 5 Adenoviridae 661 0.000128 0.005638
Iteration: 2
Family: Picornaviridae
147712 Human rhinovirus B s=0.093892 p=0.001524
9626735_14_rc Human rhinovirus B Picornaviridae 65416 0.043830 0.024898
9626735_20_rc Human rhinovirus B Picornaviridae 65415 0.043830 0.021059
9626735_82_rc Human rhinovirus B Picornaviridae 3531 0.002366 0.020178
9626735_14 Human rhinovirus B Picornaviridae 484 0.000324 0.024898
9626735_66 Human rhinovirus B Picornaviridae 453 0.000304 0.021527
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.091852 p=0.000022
17426217_138 Enterobacteria phage M13 Inoviridae 18766 0.012574 0.099983
17426217_128 Enterobacteria phage M13 Inoviridae 18112 0.012135 0.091108
17426217_25_rc Enterobacteria phage M13 Inoviridae 11589 0.007765 0.093522
17426217_142 Enterobacteria phage M13 Inoviridae 10496 0.007033 0.076782
17426217_128_rc Enterobacteria phage M13 Inoviridae 4791 0.003210 0.091108
Family: NA
89463 Sacbrood virus s=0.054068 p=0.000274
9632405_343_rc Sacbrood virus Iflavirus 48895 0.032761 0.063762
9632405_347_rc Sacbrood virus Iflavirus 399 0.000267 0.049549
9632405_349_rc Sacbrood virus Iflavirus 282 0.000189 0.042675
9632405_343 Sacbrood virus Iflavirus 110 0.000074 0.063762
9632405_167_rc Sacbrood virus Iflavirus 51 0.000034 0.052637
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.027317 p=0.002647
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 20059 0.013440 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 4068 0.002726 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 2704 0.001812 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 1851 0.001240 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 433 0.000290 0.041460
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.004536 p=0.467177
EBV_4323_rc Human herpesvirus 4 Herpesviridae 1894 0.001269 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 2132 0.001428 0.013853
EBV_6200_rc Human herpesvirus 4 Herpesviridae 1173 0.000786 0.014928
EBV_4540_rc Human herpesvirus 4 Herpesviridae 604 0.000405 0.014954
EBV_4535_rc Human herpesvirus 4 Herpesviridae 517 0.000346 0.017003
Family: Adenoviridae
130309 Human adenovirus F s=0.002172 p=0.565662
9626553_810_rc Human adenovirus F Adenoviridae 549 0.000368 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 507 0.000340 0.033578
9626553_793_rc Human adenovirus F Adenoviridae 247 0.000165 0.024888
9626553_711_rc Human adenovirus F Adenoviridae 208 0.000139 0.028761
9626187_754_rc Human adenovirus type 5 Adenoviridae 661 0.000443 0.005638
GSM40811
EPREDICT : 2007-03-28 13:24:50 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40811
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40811:GSM40811
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.289582 p=0.004502
9627730_19_rc Human rhinovirus A Picornaviridae 65356 0.020742 0.019466
9627730_22_rc Human rhinovirus A Picornaviridae 65489 0.020784 0.016616
9627730_12_rc Human rhinovirus A Picornaviridae 45573 0.014463 0.020705
9627730_13_rc Human rhinovirus A Picornaviridae 42186 0.013388 0.021650
9627730_177 Human rhinovirus A Picornaviridae 53129 0.016861 0.014559
12090 Human enterovirus D s=0.125009 p=0.000557
9626436_18_rc Human enterovirus 70 Picornaviridae 43075 0.013671 0.033147
9626433_17_rc Human enterovirus C Picornaviridae 65494 0.020786 0.018469
12408699_18_rc Poliovirus Picornaviridae 49589 0.015738 0.010949
9626436_21_rc Human enterovirus 70 Picornaviridae 13143 0.004171 0.031978
9627719_22_rc Human enterovirus A Picornaviridae 33505 0.010633 0.011222
138953 Poliovirus s=0.119321 p=0.000441
12408699_18_rc Poliovirus Picornaviridae 49589 0.015738 0.028609
9626433_17_rc Human enterovirus C Picornaviridae 65494 0.020786 0.017603
9626436_18_rc Human enterovirus 70 Picornaviridae 43075 0.013671 0.010854
12408699_21_rc Poliovirus Picornaviridae 14171 0.004497 0.030078
9626677_22_rc Human enterovirus B Picornaviridae 31522 0.010004 0.010132
138950 Human enterovirus C s=0.116136 p=0.000692
9626433_17_rc Human enterovirus C Picornaviridae 65494 0.020786 0.029244
9626436_18_rc Human enterovirus 70 Picornaviridae 43075 0.013671 0.015432
12408699_18_rc Poliovirus Picornaviridae 49589 0.015738 0.008578
9626677_18_rc Human enterovirus B Picornaviridae 45675 0.014496 0.007750
9626677_22_rc Human enterovirus B Picornaviridae 31522 0.010004 0.010914
147712 Human rhinovirus B s=0.114808 p=0.000827
9626735_18_rc Human rhinovirus B Picornaviridae 56053 0.017790 0.022396
9626735_22_rc Human rhinovirus B Picornaviridae 55155 0.017504 0.019391
9626735_20_rc Human rhinovirus B Picornaviridae 31013 0.009842 0.021059
9626735_14_rc Human rhinovirus B Picornaviridae 16157 0.005128 0.024898
9629176_21_rc Human rhinovirus 16 Picornaviridae 65482 0.020782 0.005246
Family: Dicistroviridae
64279 Drosophila C virus s=0.002115 p=0.146701
9629650_173 Drosophila C virus Dicistroviridae 1753 0.000556 0.063501
9629650_192 Drosophila C virus Dicistroviridae 748 0.000237 0.050315
9629650_91_rc Drosophila C virus Dicistroviridae 548 0.000174 0.050209
9629650_365 Drosophila C virus Dicistroviridae 452 0.000143 0.012632
9629650_368_rc Drosophila C virus Dicistroviridae 55 0.000017 0.058020
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.001063 p=0.864362
EBV_4535_rc Human herpesvirus 4 Herpesviridae 636 0.000202 0.017003
EBV_5024_rc Human herpesvirus 4 Herpesviridae 773 0.000245 0.013853
EBV_6198_rc Human herpesvirus 4 Herpesviridae 495 0.000157 0.012770
EBV_6205_rc Human herpesvirus 4 Herpesviridae 357 0.000113 0.017283
EBV_5198_rc Human herpesvirus 4 Herpesviridae 231 0.000073 0.014565
Family: NA
141860 Grapevine fanleaf virus satellite RNA s=0.000600 p=0.681147
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 323 0.000103 0.067655
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 261 0.000083 0.061403
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 195 0.000062 0.071992
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 35 0.000011 0.072605
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 22 0.000007 0.060503
190809 Arabis mosaic virus satellite RNA s=0.000231 p=0.867513
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 323 0.000103 0.025131
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 195 0.000062 0.035977
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 261 0.000083 0.013239
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 35 0.000011 0.065735
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 22 0.000007 0.018113
Iteration: 2
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.070708 p=0.000282
61098_77_rc Human rhinovirus sp. Picornaviridae 29545 0.039303 0.039854
61098_276 Human rhinovirus sp. Picornaviridae 14088 0.018741 0.037355
61098_178 Human rhinovirus sp. Picornaviridae 5822 0.007745 0.034722
61098_131_rc Human rhinovirus sp. Picornaviridae 3555 0.004729 0.032392
61098_276_rc Human rhinovirus sp. Picornaviridae 704 0.000937 0.037355
147712 Human rhinovirus B s=0.047114 p=0.009797
9626735_20_rc Human rhinovirus B Picornaviridae 31013 0.041256 0.021059
9626735_14_rc Human rhinovirus B Picornaviridae 16157 0.021493 0.024898
9626735_154_rc Human rhinovirus B Picornaviridae 681 0.000906 0.018040
9626735_3 Human rhinovirus B Picornaviridae 510 0.000678 0.019131
9626735_66_rc Human rhinovirus B Picornaviridae 275 0.000366 0.021527
46633 Human echovirus 1 s=0.007076 p=0.334605
9632987_1_rc Human coxsackievirus B2 Picornaviridae 2565 0.003412 0.011746
21363125_2 Human echovirus 1 Picornaviridae 1535 0.002042 0.016623
9632987_14_rc Human coxsackievirus B2 Picornaviridae 1611 0.002143 0.011800
9632987_16_rc Human coxsackievirus B2 Picornaviridae 2201 0.002928 0.005734
12408699_288_rc Poliovirus Picornaviridae 3561 0.004737 0.001504
123738 Enterovirus Yanbian 96-83csf s=0.006243 p=0.368402
9632987_1_rc Human coxsackievirus B2 Picornaviridae 2565 0.003412 0.013205
9632987_14_rc Human coxsackievirus B2 Picornaviridae 1611 0.002143 0.012676
21363125_2 Human echovirus 1 Picornaviridae 1535 0.002042 0.011270
9632987_16_rc Human coxsackievirus B2 Picornaviridae 2201 0.002928 0.002847
9632295_1_rc Human coxsackievirus B6 Picornaviridae 376 0.000500 0.008251
Family: Dicistroviridae
64279 Drosophila C virus s=0.004684 p=0.035506
9629650_173 Drosophila C virus Dicistroviridae 1753 0.002332 0.063501
9629650_192 Drosophila C virus Dicistroviridae 748 0.000995 0.050315
9629650_91_rc Drosophila C virus Dicistroviridae 548 0.000729 0.050209
9629650_365 Drosophila C virus Dicistroviridae 452 0.000601 0.012632
9629650_368_rc Drosophila C virus Dicistroviridae 55 0.000073 0.058020
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.002351 p=0.674813
EBV_4535_rc Human herpesvirus 4 Herpesviridae 636 0.000846 0.017003
EBV_5024_rc Human herpesvirus 4 Herpesviridae 773 0.001028 0.013853
EBV_6198_rc Human herpesvirus 4 Herpesviridae 495 0.000658 0.012770
EBV_6205_rc Human herpesvirus 4 Herpesviridae 357 0.000475 0.017283
EBV_5198_rc Human herpesvirus 4 Herpesviridae 231 0.000307 0.014565
Family: NA
141860 Grapevine fanleaf virus satellite RNA s=0.001326 p=0.398141
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 323 0.000430 0.067655
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 261 0.000347 0.061403
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 195 0.000259 0.071992
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 35 0.000047 0.072605
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 22 0.000029 0.060503
190809 Arabis mosaic virus satellite RNA s=0.000514 p=0.672437
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 323 0.000430 0.025131
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 195 0.000259 0.035977
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 261 0.000347 0.013239
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 35 0.000047 0.065735
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 22 0.000029 0.018113
GSM40812
EPREDICT : 2007-03-28 13:26:40 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40812
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40812:GSM40812
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.345155 p=0.003091
9627730_13_rc Human rhinovirus A Picornaviridae 65422 0.010039 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65424 0.010039 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65426 0.010039 0.019466
9627730_83 Human rhinovirus A Picornaviridae 65436 0.010041 0.018605
9627730_16_rc Human rhinovirus A Picornaviridae 65426 0.010039 0.018468
123738 Enterovirus Yanbian 96-83csf s=0.173385 p=0.000459
9627719_18_rc Human enterovirus A Picornaviridae 65441 0.010042 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 65428 0.010040 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65442 0.010042 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65441 0.010042 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65441 0.010042 0.012615
169066 Human rhinovirus sp. s=0.172253 p=0.000009
61098_187 Human rhinovirus sp. Picornaviridae 65446 0.010042 0.036614
61098_187_rc Human rhinovirus sp. Picornaviridae 65417 0.010038 0.036614
61098_178 Human rhinovirus sp. Picornaviridae 59993 0.009206 0.034722
61098_255 Human rhinovirus sp. Picornaviridae 65432 0.010040 0.029611
61098_178_rc Human rhinovirus sp. Picornaviridae 22290 0.003420 0.034722
12090 Human enterovirus D s=0.170415 p=0.000197
9626436_18_rc Human enterovirus 70 Picornaviridae 65435 0.010041 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65446 0.010042 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65414 0.010038 0.018469
12408699_21_rc Poliovirus Picornaviridae 65448 0.010043 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65444 0.010042 0.014212
147712 Human rhinovirus B s=0.169029 p=0.000234
9626735_14_rc Human rhinovirus B Picornaviridae 65425 0.010039 0.024898
9626735_18_rc Human rhinovirus B Picornaviridae 65433 0.010041 0.022396
9626735_20_rc Human rhinovirus B Picornaviridae 65426 0.010039 0.021059
9626735_8_rc Human rhinovirus B Picornaviridae 65424 0.010039 0.020065
9626735_43_rc Human rhinovirus B Picornaviridae 65435 0.010041 0.019689
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.081462 p=0.000033
17426217_142 Enterobacteria phage M13 Inoviridae 46126 0.007078 0.076782
17426217_138 Enterobacteria phage M13 Inoviridae 32443 0.004978 0.099983
17426217_128 Enterobacteria phage M13 Inoviridae 21049 0.003230 0.091108
17426217_229 Enterobacteria phage M13 Inoviridae 13046 0.002002 0.115828
17426217_128_rc Enterobacteria phage M13 Inoviridae 13598 0.002087 0.091108
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.016728 p=0.009810
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 30013 0.004605 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 4074 0.000625 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 2533 0.000389 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2537 0.000389 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 801 0.000123 0.041460
Family: NA
89463 Sacbrood virus s=0.014133 p=0.012100
9632405_343_rc Sacbrood virus Iflavirus 27874 0.004277 0.063762
9632405_167_rc Sacbrood virus Iflavirus 769 0.000118 0.052637
9632405_347_rc Sacbrood virus Iflavirus 297 0.000046 0.049549
9632405_343 Sacbrood virus Iflavirus 192 0.000029 0.063762
9632405_349_rc Sacbrood virus Iflavirus 140 0.000021 0.042675
12475 Hepatitis delta virus s=0.004340 p=0.426371
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 6096 0.000935 0.051728
13277517_1436_P70_rc Hepatitis delta virus Deltavirus 2138 0.000328 0.043700
13277517_1511_P70 Hepatitis delta virus Deltavirus 1662 0.000255 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 732 0.000112 0.051914
13277517_51 Hepatitis delta virus Deltavirus 353 0.000054 0.054173
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.003775 p=0.678743
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 13548 0.002079 0.004454
HCMVUL57_180 Human herpesvirus 5 Herpesviridae 2120 0.000325 0.005094
HCMVUL29_184 Human herpesvirus 5 Herpesviridae 952 0.000146 0.006011
9625671_3138 Human herpesvirus 5 Herpesviridae 1174 0.000180 0.004744
HCMVUL129_254 Human herpesvirus 5 Herpesviridae 1205 0.000185 0.004072
28304 Rat cytomegalovirus s=0.002676 p=0.619133
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 3919 0.000601 0.029061
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 1090 0.000167 0.027888
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 479 0.000074 0.031290
9629732_5440 Equid herpesvirus 4 Herpesviridae 3366 0.000516 0.002030
9625671_3138 Human herpesvirus 5 Herpesviridae 1174 0.000180 0.003899
79700 Rat cytomegalovirus s=0.002676 p=0.619133
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 3919 0.000601 0.029061
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 1090 0.000167 0.027888
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 479 0.000074 0.031290
9629732_5440 Equid herpesvirus 4 Herpesviridae 3366 0.000516 0.002030
9625671_3138 Human herpesvirus 5 Herpesviridae 1174 0.000180 0.003899
Family: Nanoviridae
36772 Subterranean clover stunt virus s=0.002648 p=0.132730
20530230_3 Subterranean clover stunt virus Nanoviridae 1276 0.000196 0.277114
20530226_3 Subterranean clover stunt virus Nanoviridae 892 0.000137 0.293729
20530232_3 Subterranean clover stunt virus Nanoviridae 525 0.000081 0.286285
20177473_4 Milk vetch dwarf virus Nanoviridae 21 0.000003 0.031264
20530232_1 Subterranean clover stunt virus Nanoviridae 15 0.000002 0.040172
Iteration: 2
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.168857 p=0.000010
61098_187 Human rhinovirus sp. Picornaviridae 65446 0.026012 0.036614
61098_187_rc Human rhinovirus sp. Picornaviridae 65417 0.026001 0.036614
61098_178 Human rhinovirus sp. Picornaviridae 59993 0.023845 0.034722
61098_178_rc Human rhinovirus sp. Picornaviridae 22290 0.008859 0.034722
61098_276_rc Human rhinovirus sp. Picornaviridae 3771 0.001499 0.037355
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.158566 p=0.000003
17426217_142 Enterobacteria phage M13 Inoviridae 46126 0.018333 0.076782
17426217_138 Enterobacteria phage M13 Inoviridae 32443 0.012895 0.099983
17426217_128 Enterobacteria phage M13 Inoviridae 21049 0.008366 0.091108
17426217_229 Enterobacteria phage M13 Inoviridae 13046 0.005185 0.115828
17426217_128_rc Enterobacteria phage M13 Inoviridae 13598 0.005405 0.091108
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.032562 p=0.001581
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 30013 0.011929 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 4074 0.001619 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 2533 0.001007 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2537 0.001008 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 801 0.000318 0.041460
Family: NA
89463 Sacbrood virus s=0.027514 p=0.002181
9632405_343_rc Sacbrood virus Iflavirus 27874 0.011079 0.063762
9632405_167_rc Sacbrood virus Iflavirus 769 0.000306 0.052637
9632405_347_rc Sacbrood virus Iflavirus 297 0.000118 0.049549
9632405_343 Sacbrood virus Iflavirus 192 0.000076 0.063762
9632405_349_rc Sacbrood virus Iflavirus 140 0.000056 0.042675
12475 Hepatitis delta virus s=0.008440 p=0.260052
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 6096 0.002423 0.051728
13277517_1436_P70_rc Hepatitis delta virus Deltavirus 2138 0.000850 0.043700
13277517_1511_P70 Hepatitis delta virus Deltavirus 1662 0.000661 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 732 0.000291 0.051914
13277517_51 Hepatitis delta virus Deltavirus 353 0.000140 0.054173
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.007345 p=0.482953
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 13548 0.005385 0.004454
HCMVUL57_180 Human herpesvirus 5 Herpesviridae 2120 0.000843 0.005094
HCMVUL29_184 Human herpesvirus 5 Herpesviridae 952 0.000378 0.006011
9625671_3138 Human herpesvirus 5 Herpesviridae 1174 0.000467 0.004744
HCMVUL129_254 Human herpesvirus 5 Herpesviridae 1205 0.000479 0.004072
28304 Rat cytomegalovirus s=0.005207 p=0.420114
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 3919 0.001558 0.029061
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 1090 0.000433 0.027888
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 479 0.000190 0.031290
9629732_5440 Equid herpesvirus 4 Herpesviridae 3366 0.001338 0.002030
9625671_3138 Human herpesvirus 5 Herpesviridae 1174 0.000467 0.003899
79700 Rat cytomegalovirus s=0.005207 p=0.420114
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 3919 0.001558 0.029061
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 1090 0.000433 0.027888
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 479 0.000190 0.031290
9629732_5440 Equid herpesvirus 4 Herpesviridae 3366 0.001338 0.002030
9625671_3138 Human herpesvirus 5 Herpesviridae 1174 0.000467 0.003899
Family: Nanoviridae
36772 Subterranean clover stunt virus s=0.005150 p=0.062217
20530230_3 Subterranean clover stunt virus Nanoviridae 1276 0.000507 0.277114
20530226_3 Subterranean clover stunt virus Nanoviridae 892 0.000355 0.293729
20530232_3 Subterranean clover stunt virus Nanoviridae 525 0.000209 0.286285
20177473_4 Milk vetch dwarf virus Nanoviridae 21 0.000008 0.031264
20530232_1 Subterranean clover stunt virus Nanoviridae 15 0.000006 0.040172
GSM40813
EPREDICT : 2007-03-28 13:31:30 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40813
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40813:GSM40813
Iteration: 1
Family: Orthomyxoviridae
130760 Influenza A virus s=0.437353 p=0.000002
8486129_59 Influenza A virus Orthomyxoviridae 24480 0.233167 0.161429
8486129_2_rc Influenza A virus Orthomyxoviridae 22331 0.212698 0.070929
8486129_29_rc Influenza A virus Orthomyxoviridae 2376 0.022631 0.060575
8486129_59_rc Influenza A virus Orthomyxoviridae 536 0.005105 0.161429
8486129_56 Influenza A virus Orthomyxoviridae 198 0.001886 0.207068
11320 Influenza A virus s=0.260730 p=0.000002
8486129_2_rc Influenza A virus Orthomyxoviridae 22331 0.212698 0.073315
8486129_20_rc Influenza A virus Orthomyxoviridae 5827 0.055501 0.073178
8486129_29_rc Influenza A virus Orthomyxoviridae 2376 0.022631 0.061521
8486129_56 Influenza A virus Orthomyxoviridae 198 0.001886 0.073726
8486129_2 Influenza A virus Orthomyxoviridae 83 0.000791 0.073315
183764 Influenza A virus s=0.258910 p=0.000002
8486129_2_rc Influenza A virus Orthomyxoviridae 22331 0.212698 0.075257
8486129_20_rc Influenza A virus Orthomyxoviridae 5827 0.055501 0.061872
8486129_29_rc Influenza A virus Orthomyxoviridae 2376 0.022631 0.063151
8486129_56 Influenza A virus Orthomyxoviridae 198 0.001886 0.075679
8486129_2 Influenza A virus Orthomyxoviridae 83 0.000791 0.075257
Iteration: 2
***** No hits found! *****
GSM40814
EPREDICT : 2007-03-28 13:33:09 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40814
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40814:GSM40814
Iteration: 1
Family: Paramyxoviridae
12814 Respiratory syncytial virus s=0.679008 p=0.000000
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 23190 0.045094 0.050854
9629367_519 Respiratory syncytial virus Paramyxoviridae 25498 0.049583 0.039895
9629367_63 Respiratory syncytial virus Paramyxoviridae 20208 0.039296 0.047021
9629367_519_rc Respiratory syncytial virus Paramyxoviridae 19252 0.037437 0.039895
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 12499 0.024305 0.047021
11250 Human respiratory syncytial virus s=0.504696 p=0.000001
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 19119 0.037178 0.055394
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 23190 0.045094 0.037270
9629198_434 Human respiratory syncytial virus Paramyxoviridae 12725 0.024745 0.053916
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 9648 0.018761 0.065924
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 11577 0.022512 0.053916
11246 Bovine respiratory syncytial virus s=0.271620 p=0.000000
9631267_63 Bovine respiratory syncytial virus Paramyxoviridae 13066 0.025408 0.048894
9629367_63 Respiratory syncytial virus Paramyxoviridae 20208 0.039296 0.023265
9631267_63_rc Bovine respiratory syncytial virus Paramyxoviridae 7550 0.014681 0.048894
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 19119 0.037178 0.019006
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 12499 0.024305 0.023265
162145 Turkey rhinotracheitis virus s=0.111386 p=0.000305
22780169_354_rc Human metapneumovirus Paramyxoviridae 16427 0.031943 0.057362
22780169_372_rc Human metapneumovirus Paramyxoviridae 8350 0.016237 0.055561
22780169_372 Human metapneumovirus Paramyxoviridae 5481 0.010658 0.055561
9629198_434 Human respiratory syncytial virus Paramyxoviridae 12725 0.024745 0.008364
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 11577 0.022512 0.008364
Family: Herpesviridae
10372 Human herpesvirus 7 s=0.003864 p=0.482461
9628718_5767 Human herpesvirus 7 Herpesviridae 131 0.000255 0.063251
9628718_5766 Human herpesvirus 7 Herpesviridae 116 0.000226 0.065064
9628718_5765 Human herpesvirus 7 Herpesviridae 104 0.000202 0.066656
9628718_5780 Human herpesvirus 7 Herpesviridae 153 0.000298 0.035175
9628718_5776 Human herpesvirus 7 Herpesviridae 126 0.000245 0.035175
Family: Picornaviridae
147712 Human rhinovirus B s=0.003607 p=0.503569
9626735_268 Human rhinovirus B Picornaviridae 456 0.000887 0.013652
9626735_154 Human rhinovirus B Picornaviridae 338 0.000657 0.018040
9626735_268_rc Human rhinovirus B Picornaviridae 311 0.000605 0.013652
9626735_3_rc Human rhinovirus B Picornaviridae 187 0.000364 0.019131
9626735_218_rc Human rhinovirus B Picornaviridae 213 0.000414 0.014507
Family: NA
9606 Homo sapiens s=0.003408 p=0.328760
11228730_388_rc Human endogenous retrovirus 15 Retroviridae 429 0.000834 0.100253
11228730_388 Human endogenous retrovirus 15 Retroviridae 140 0.000272 0.100253
11228730_382_rc Human endogenous retrovirus 15 Retroviridae 120 0.000233 0.102523
11228730_382 Human endogenous retrovirus 15 Retroviridae 117 0.000228 0.102523
11228730_356_rc Human endogenous retrovirus 15 Retroviridae 8 0.000016 0.111858
Family: Adenoviridae
129951 Human adenovirus C s=0.002899 p=0.587192
9626158_823 Human adenovirus C Adenoviridae 214 0.000416 0.020900
9626158_868 Human adenovirus C Adenoviridae 111 0.000216 0.029082
9626158_823_rc Human adenovirus C Adenoviridae 105 0.000204 0.020900
9626158_754 Human adenovirus C Adenoviridae 65 0.000126 0.024229
9626158_830_rc Human adenovirus C Adenoviridae 65 0.000126 0.023852
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.002777 p=0.331328
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 263 0.000511 0.228244
16507983_187 Human endogenous retrovirus K115 Retroviridae 135 0.000263 0.130329
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 115 0.000224 0.130329
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 19 0.000037 0.255549
16507983_164 Human endogenous retrovirus K115 Retroviridae 16 0.000031 0.255549
Iteration: 2
Family: Herpesviridae
10372 Human herpesvirus 7 s=0.007165 p=0.342585
9628718_5767 Human herpesvirus 7 Herpesviridae 131 0.000679 0.063251
9628718_5766 Human herpesvirus 7 Herpesviridae 116 0.000601 0.065064
9628718_5765 Human herpesvirus 7 Herpesviridae 104 0.000539 0.066656
9628718_5780 Human herpesvirus 7 Herpesviridae 153 0.000793 0.035175
9628718_5776 Human herpesvirus 7 Herpesviridae 126 0.000653 0.035175
Family: Paramyxoviridae
63330 Hendra virus s=0.007158 p=0.029653
9630557_521_rc Hendra virus Paramyxoviridae 530 0.002746 0.059915
9630557_512_rc Hendra virus Paramyxoviridae 286 0.001482 0.063396
9630557_521 Hendra virus Paramyxoviridae 199 0.001031 0.059915
9630557_523 Hendra virus Paramyxoviridae 91 0.000471 0.072672
9630557_512 Hendra virus Paramyxoviridae 91 0.000471 0.063396
Family: Picornaviridae
147712 Human rhinovirus B s=0.006688 p=0.289784
9626735_268 Human rhinovirus B Picornaviridae 456 0.002363 0.013652
9626735_154 Human rhinovirus B Picornaviridae 338 0.001751 0.018040
9626735_268_rc Human rhinovirus B Picornaviridae 311 0.001611 0.013652
9626735_3_rc Human rhinovirus B Picornaviridae 187 0.000969 0.019131
9626735_218_rc Human rhinovirus B Picornaviridae 213 0.001104 0.014507
Family: NA
9606 Homo sapiens s=0.006324 p=0.209849
11228730_388_rc Human endogenous retrovirus 15 Retroviridae 429 0.002223 0.100253
11228730_388 Human endogenous retrovirus 15 Retroviridae 140 0.000725 0.100253
11228730_382_rc Human endogenous retrovirus 15 Retroviridae 120 0.000622 0.102523
11228730_382 Human endogenous retrovirus 15 Retroviridae 117 0.000606 0.102523
11228730_356_rc Human endogenous retrovirus 15 Retroviridae 8 0.000041 0.111858
Family: Adenoviridae
129951 Human adenovirus C s=0.005375 p=0.396017
9626158_823 Human adenovirus C Adenoviridae 214 0.001109 0.020900
9626158_868 Human adenovirus C Adenoviridae 111 0.000575 0.029082
9626158_823_rc Human adenovirus C Adenoviridae 105 0.000544 0.020900
9626158_754 Human adenovirus C Adenoviridae 65 0.000337 0.024229
9626158_830_rc Human adenovirus C Adenoviridae 65 0.000337 0.023852
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.005154 p=0.224241
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 263 0.001363 0.228244
16507983_187 Human endogenous retrovirus K115 Retroviridae 135 0.000699 0.130329
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 115 0.000596 0.130329
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 19 0.000098 0.255549
16507983_164 Human endogenous retrovirus K115 Retroviridae 16 0.000083 0.255549
GSM40815
EPREDICT : 2007-03-28 13:35:11 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40815
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40815:GSM40815
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.337714 p=0.003241
9627730_13_rc Human rhinovirus A Picornaviridae 65402 0.009718 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65367 0.009713 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65414 0.009720 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65404 0.009719 0.018468
9627730_22_rc Human rhinovirus A Picornaviridae 65389 0.009716 0.016616
169066 Human rhinovirus sp. s=0.187887 p=0.000006
61098_58_rc Human rhinovirus sp. Picornaviridae 65441 0.009724 0.036984
61098_178 Human rhinovirus sp. Picornaviridae 63534 0.009441 0.034722
61098_45 Human rhinovirus sp. Picornaviridae 65438 0.009724 0.033441
61098_28_rc Human rhinovirus sp. Picornaviridae 65444 0.009724 0.031088
61098_255 Human rhinovirus sp. Picornaviridae 65430 0.009722 0.029611
123738 Enterovirus Yanbian 96-83csf s=0.180218 p=0.000406
9627719_18_rc Human enterovirus A Picornaviridae 65430 0.009722 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 65413 0.009720 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65419 0.009721 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65407 0.009719 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65426 0.009722 0.012615
46633 Human echovirus 1 s=0.171714 p=0.000496
21363125_21_rc Human echovirus 1 Picornaviridae 65424 0.009721 0.018603
21363125_18_rc Human echovirus 1 Picornaviridae 65413 0.009720 0.018139
21363125_23_rc Human echovirus 1 Picornaviridae 62515 0.009289 0.014342
9627719_18_rc Human enterovirus A Picornaviridae 65430 0.009722 0.012473
9626677_18_rc Human enterovirus B Picornaviridae 65419 0.009721 0.011222
12090 Human enterovirus D s=0.170623 p=0.000197
9626436_18_rc Human enterovirus 70 Picornaviridae 65414 0.009720 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65433 0.009723 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65397 0.009717 0.018469
12408699_21_rc Poliovirus Picornaviridae 65441 0.009724 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65443 0.009724 0.014212
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.108932 p=0.000012
17426217_138 Enterobacteria phage M13 Inoviridae 64695 0.009613 0.099983
17426217_128 Enterobacteria phage M13 Inoviridae 54746 0.008135 0.091108
17426217_142 Enterobacteria phage M13 Inoviridae 39087 0.005808 0.076782
17426217_229 Enterobacteria phage M13 Inoviridae 15076 0.002240 0.115828
17426217_25_rc Enterobacteria phage M13 Inoviridae 14292 0.002124 0.093522
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.021462 p=0.005163
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 37909 0.005633 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 5976 0.000888 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 4104 0.000610 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 3552 0.000528 0.052060
9629935_396 Rhopalosiphum padi virus Dicistroviridae 1010 0.000150 0.051960
Family: NA
89463 Sacbrood virus s=0.017430 p=0.007308
9632405_343_rc Sacbrood virus Iflavirus 35847 0.005327 0.063762
9632405_347_rc Sacbrood virus Iflavirus 581 0.000086 0.049549
9632405_343 Sacbrood virus Iflavirus 324 0.000048 0.063762
9632405_349_rc Sacbrood virus Iflavirus 342 0.000051 0.042675
9632405_167_rc Sacbrood virus Iflavirus 143 0.000021 0.052637
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.004262 p=0.487400
EBV_4323_rc Human herpesvirus 4 Herpesviridae 4923 0.000732 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 4879 0.000725 0.013853
EBV_6200_rc Human herpesvirus 4 Herpesviridae 1900 0.000282 0.014928
EBV_4540_rc Human herpesvirus 4 Herpesviridae 1181 0.000175 0.014954
EBV_4535_rc Human herpesvirus 4 Herpesviridae 882 0.000131 0.017003
Family: Adenoviridae
129951 Human adenovirus C s=0.002303 p=0.655699
9626187_754_rc Human adenovirus type 5 Adenoviridae 3440 0.000511 0.024908
9626553_810_rc Human adenovirus F Adenoviridae 1153 0.000171 0.011042
9626158_823_rc Human adenovirus C Adenoviridae 441 0.000066 0.020900
9626158_868_rc Human adenovirus C Adenoviridae 238 0.000035 0.029082
9626187_866_rc Human adenovirus type 5 Adenoviridae 209 0.000031 0.023147
Iteration: 2
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.210858 p=0.000001
17426217_138 Enterobacteria phage M13 Inoviridae 64695 0.026296 0.099983
17426217_128 Enterobacteria phage M13 Inoviridae 54746 0.022252 0.091108
17426217_142 Enterobacteria phage M13 Inoviridae 39087 0.015887 0.076782
17426217_229 Enterobacteria phage M13 Inoviridae 15076 0.006128 0.115828
17426217_25_rc Enterobacteria phage M13 Inoviridae 14292 0.005809 0.093522
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.181099 p=0.000007
61098_58_rc Human rhinovirus sp. Picornaviridae 65441 0.026599 0.036984
61098_178 Human rhinovirus sp. Picornaviridae 63534 0.025824 0.034722
61098_45 Human rhinovirus sp. Picornaviridae 65438 0.026598 0.033441
61098_178_rc Human rhinovirus sp. Picornaviridae 29394 0.011948 0.034722
61098_77 Human rhinovirus sp. Picornaviridae 18888 0.007677 0.039854
147712 Human rhinovirus B s=0.119309 p=0.000733
9626735_14_rc Human rhinovirus B Picornaviridae 65399 0.026582 0.024898
9626735_20_rc Human rhinovirus B Picornaviridae 65382 0.026575 0.021059
9626735_82 Human rhinovirus B Picornaviridae 48746 0.019813 0.020178
9626735_82_rc Human rhinovirus B Picornaviridae 35402 0.014390 0.020178
9626735_279_rc Human rhinovirus B Picornaviridae 1649 0.000670 0.016567
46633 Human echovirus 1 s=0.051407 p=0.013588
21363125_2 Human echovirus 1 Picornaviridae 30448 0.012376 0.016623
9632987_14_rc Human coxsackievirus B2 Picornaviridae 26849 0.010913 0.011800
9632987_1_rc Human coxsackievirus B2 Picornaviridae 12897 0.005242 0.011746
9629458_14_rc Human echovirus 12 Picornaviridae 7692 0.003127 0.009697
9632987_16_rc Human coxsackievirus B2 Picornaviridae 10315 0.004193 0.005734
106966 Porcine enterovirus B s=0.050565 p=0.012220
9629634_282_rc Porcine enterovirus B Picornaviridae 41419 0.016835 0.023745
9629634_9_rc Porcine enterovirus B Picornaviridae 13345 0.005424 0.026943
9632987_1_rc Human coxsackievirus B2 Picornaviridae 12897 0.005242 0.015819
9632987_14_rc Human coxsackievirus B2 Picornaviridae 26849 0.010913 0.005843
9629634_11_rc Porcine enterovirus B Picornaviridae 4255 0.001729 0.031252
123738 Enterovirus Yanbian 96-83csf s=0.046031 p=0.016747
21363125_2 Human echovirus 1 Picornaviridae 30448 0.012376 0.011270
9632987_14_rc Human coxsackievirus B2 Picornaviridae 26849 0.010913 0.012676
9632987_1_rc Human coxsackievirus B2 Picornaviridae 12897 0.005242 0.013205
9627719_14_rc Human enterovirus A Picornaviridae 6456 0.002624 0.010612
9627719_1_rc Human enterovirus A Picornaviridae 7658 0.003113 0.007311
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.041542 p=0.000743
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 37909 0.015409 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 5976 0.002429 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 4104 0.001668 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 3552 0.001444 0.052060
9629935_396 Rhopalosiphum padi virus Dicistroviridae 1010 0.000411 0.051960
Family: NA
89463 Sacbrood virus s=0.033751 p=0.001208
9632405_343_rc Sacbrood virus Iflavirus 35847 0.014570 0.063762
9632405_347_rc Sacbrood virus Iflavirus 581 0.000236 0.049549
9632405_343 Sacbrood virus Iflavirus 324 0.000132 0.063762
9632405_349_rc Sacbrood virus Iflavirus 342 0.000139 0.042675
9632405_167_rc Sacbrood virus Iflavirus 143 0.000058 0.052637
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.008249 p=0.284418
EBV_4323_rc Human herpesvirus 4 Herpesviridae 4923 0.002001 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 4879 0.001983 0.013853
EBV_6200_rc Human herpesvirus 4 Herpesviridae 1900 0.000772 0.014928
EBV_4540_rc Human herpesvirus 4 Herpesviridae 1181 0.000480 0.014954
EBV_4535_rc Human herpesvirus 4 Herpesviridae 882 0.000358 0.017003
Family: Adenoviridae
129951 Human adenovirus C s=0.004454 p=0.453697
9626187_754_rc Human adenovirus type 5 Adenoviridae 3440 0.001398 0.024908
9626553_810_rc Human adenovirus F Adenoviridae 1153 0.000469 0.011042
9626158_823_rc Human adenovirus C Adenoviridae 441 0.000179 0.020900
9626158_868_rc Human adenovirus C Adenoviridae 238 0.000097 0.029082
9626187_866_rc Human adenovirus type 5 Adenoviridae 209 0.000085 0.023147
GSM40816
EPREDICT : 2007-03-28 13:38:50 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40816
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40816:GSM40816
Iteration: 1
Family: Paramyxoviridae
12814 Respiratory syncytial virus s=0.277623 p=0.000001
9629367_111 Respiratory syncytial virus Paramyxoviridae 65384 0.076127 0.044362
9629367_63 Respiratory syncytial virus Paramyxoviridae 21055 0.024514 0.047021
9629198_107 Human respiratory syncytial virus Paramyxoviridae 42629 0.049633 0.019220
9629367_457_rc Respiratory syncytial virus Paramyxoviridae 10505 0.012231 0.045303
9631267_63 Bovine respiratory syncytial virus Paramyxoviridae 9404 0.010949 0.023775
11250 Human respiratory syncytial virus s=0.188753 p=0.000042
9629198_107 Human respiratory syncytial virus Paramyxoviridae 42629 0.049633 0.045780
9629198_111 Human respiratory syncytial virus Paramyxoviridae 19124 0.022266 0.049603
9629367_111 Respiratory syncytial virus Paramyxoviridae 65384 0.076127 0.010829
9629198_434 Human respiratory syncytial virus Paramyxoviridae 8021 0.009339 0.053916
9629367_63 Respiratory syncytial virus Paramyxoviridae 21055 0.024514 0.010181
11246 Bovine respiratory syncytial virus s=0.103387 p=0.000026
9629367_63 Respiratory syncytial virus Paramyxoviridae 21055 0.024514 0.023265
9631267_63 Bovine respiratory syncytial virus Paramyxoviridae 9404 0.010949 0.048894
9629198_107 Human respiratory syncytial virus Paramyxoviridae 42629 0.049633 0.009023
9631267_273 Bovine respiratory syncytial virus Paramyxoviridae 5692 0.006627 0.044602
9631267_463 Bovine respiratory syncytial virus Paramyxoviridae 4486 0.005223 0.049394
162145 Turkey rhinotracheitis virus s=0.021741 p=0.016276
22780169_372 Human metapneumovirus Paramyxoviridae 7968 0.009277 0.055561
9629198_434 Human respiratory syncytial virus Paramyxoviridae 8021 0.009339 0.008364
22780169_372_rc Human metapneumovirus Paramyxoviridae 753 0.000877 0.055561
22780169_354_rc Human metapneumovirus Paramyxoviridae 419 0.000488 0.057362
9631267_429 Bovine respiratory syncytial virus Paramyxoviridae 3065 0.003569 0.007206
Family: Picornaviridae
39085 Human parechovirus s=0.016811 p=0.063890
9630376_231 Human parechovirus 2 Picornaviridae 8532 0.009934 0.060714
9630376_289_rc Human parechovirus 2 Picornaviridae 101 0.000118 0.056129
9630376_66_rc Human parechovirus 2 Picornaviridae 95 0.000111 0.057079
9630376_231_rc Human parechovirus 2 Picornaviridae 78 0.000091 0.060714
9630376_22_rc Human parechovirus 2 Picornaviridae 45 0.000052 0.072560
Family: Herpesviridae
10372 Human herpesvirus 7 s=0.015480 p=0.195910
9628718_5776 Human herpesvirus 7 Herpesviridae 2053 0.002390 0.035175
9628718_5780 Human herpesvirus 7 Herpesviridae 1925 0.002241 0.035175
9628718_5786 Human herpesvirus 7 Herpesviridae 3891 0.004530 0.014291
9628718_5768 Human herpesvirus 7 Herpesviridae 987 0.001149 0.040365
9628718_5564 Human herpesvirus 7 Herpesviridae 5432 0.006324 0.006659
Family: Baculoviridae
10449 Lymantria dispar nucleopolyhedrovirus s=0.013818 p=0.090066
9630966_37_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 1971 0.002295 0.041617
9630966_5576_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 1261 0.001468 0.055073
9630966_37 Lymantria dispar nucleopolyhedroviru Baculoviridae 1541 0.001794 0.041617
9630816_4373_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 2016 0.002347 0.012868
9630966_2622_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 343 0.000399 0.052547
Family: Papillomaviridae
10593 Human papillomavirus type 45 s=0.013552 p=0.078668
9627356_263_rc Human papillomavirus type 45 Papillomaviridae 2561 0.002982 0.036976
9627356_96_rc Human papillomavirus type 45 Papillomaviridae 2563 0.002984 0.033431
9627356_248 Human papillomavirus type 45 Papillomaviridae 277 0.000323 0.033997
9627156_80_rc Human papillomavirus type 42 Papillomaviridae 1106 0.001288 0.006162
9627284_167_rc Human papillomavirus type 17 Papillomaviridae 1402 0.001632 0.004300
Family: Phycodnaviridae
10506 Paramecium bursaria Chlorella virus 1 s=0.010524 p=0.012752
11693124_5372_rc Paramecium bursaria Chlorella virus Phycodnaviridae 1838 0.002140 0.084852
11693124_9473_rc Paramecium bursaria Chlorella virus Phycodnaviridae 1406 0.001637 0.087348
11693124_5372 Paramecium bursaria Chlorella virus Phycodnaviridae 1172 0.001365 0.084852
11693124_3079 Paramecium bursaria Chlorella virus Phycodnaviridae 162 0.000189 0.113097
11693124_9473 Paramecium bursaria Chlorella virus Phycodnaviridae 154 0.000179 0.087348
Iteration: 2
Family: Picornaviridae
39085 Human parechovirus s=0.022342 p=0.042393
9630376_231 Human parechovirus 2 Picornaviridae 8532 0.013326 0.060714
9630376_289_rc Human parechovirus 2 Picornaviridae 101 0.000158 0.056129
9630376_66_rc Human parechovirus 2 Picornaviridae 95 0.000148 0.057079
9630376_231_rc Human parechovirus 2 Picornaviridae 78 0.000122 0.060714
9630376_22_rc Human parechovirus 2 Picornaviridae 45 0.000070 0.072560
Family: Herpesviridae
10372 Human herpesvirus 7 s=0.020580 p=0.153153
9628718_5776 Human herpesvirus 7 Herpesviridae 2053 0.003206 0.035175
9628718_5780 Human herpesvirus 7 Herpesviridae 1925 0.003007 0.035175
9628718_5786 Human herpesvirus 7 Herpesviridae 3891 0.006077 0.014291
9628718_5768 Human herpesvirus 7 Herpesviridae 987 0.001542 0.040365
9628718_5564 Human herpesvirus 7 Herpesviridae 5432 0.008484 0.006659
Family: Baculoviridae
10449 Lymantria dispar nucleopolyhedrovirus s=0.018364 p=0.059916
9630966_37_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 1971 0.003078 0.041617
9630966_5576_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 1261 0.001969 0.055073
9630966_37 Lymantria dispar nucleopolyhedroviru Baculoviridae 1541 0.002407 0.041617
9630816_4373_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 2016 0.003149 0.012868
9630966_2622_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 343 0.000536 0.052547
Family: Papillomaviridae
10593 Human papillomavirus type 45 s=0.018013 p=0.050915
9627356_263_rc Human papillomavirus type 45 Papillomaviridae 2561 0.004000 0.036976
9627356_96_rc Human papillomavirus type 45 Papillomaviridae 2563 0.004003 0.033431
9627356_248 Human papillomavirus type 45 Papillomaviridae 277 0.000433 0.033997
9627156_80_rc Human papillomavirus type 42 Papillomaviridae 1106 0.001727 0.006162
9627284_167_rc Human papillomavirus type 17 Papillomaviridae 1402 0.002190 0.004300
Family: Phycodnaviridae
10506 Paramecium bursaria Chlorella virus 1 s=0.013983 p=0.006736
11693124_5372_rc Paramecium bursaria Chlorella virus Phycodnaviridae 1838 0.002871 0.084852
11693124_9473_rc Paramecium bursaria Chlorella virus Phycodnaviridae 1406 0.002196 0.087348
11693124_5372 Paramecium bursaria Chlorella virus Phycodnaviridae 1172 0.001830 0.084852
11693124_3079 Paramecium bursaria Chlorella virus Phycodnaviridae 162 0.000253 0.113097
11693124_9473 Paramecium bursaria Chlorella virus Phycodnaviridae 154 0.000241 0.087348
Family: Adenoviridae
10537 Canine adenovirus s=0.011304 p=0.088100
9629096_16_rc Canine adenovirus Adenoviridae 3138 0.004901 0.059071
9629096_739_rc Canine adenovirus Adenoviridae 90 0.000141 0.063143
9629096_770_rc Canine adenovirus Adenoviridae 70 0.000109 0.061657
9632407_786 Human adenovirus D Adenoviridae 337 0.000526 0.009729
9629096_739 Canine adenovirus Adenoviridae 52 0.000081 0.063143
GSM40817
EPREDICT : 2007-03-28 13:42:46 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40817
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40817:GSM40817
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.642582 p=0.000001
9626069_81 Human papillomavirus type 18 Papillomaviridae 8784 0.033492 0.031469
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 5467 0.020845 0.036179
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 5751 0.021927 0.031469
9626069_269 Human papillomavirus type 18 Papillomaviridae 5396 0.020574 0.028366
9626069_80 Human papillomavirus type 18 Papillomaviridae 4615 0.017596 0.030247
10593 Human papillomavirus type 45 s=0.189236 p=0.000260
9626069_269 Human papillomavirus type 18 Papillomaviridae 5396 0.020574 0.012905
9626069_81 Human papillomavirus type 18 Papillomaviridae 8784 0.033492 0.007905
9626069_291_P70 Human papillomavirus type 18 Papillomaviridae 3916 0.014931 0.014299
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 5467 0.020845 0.009866
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 5751 0.021927 0.007905
37115 Human papillomavirus type 59 s=0.083447 p=0.000124
9626069_252 Human papillomavirus type 18 Papillomaviridae 4318 0.016464 0.030317
9626069_81 Human papillomavirus type 18 Papillomaviridae 8784 0.033492 0.007122
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 1808 0.006894 0.030317
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 5751 0.021927 0.007122
9627962_87_rc Human papillomavirus type 59 Papillomaviridae 73 0.000278 0.056847
44028 Human papillomavirus type 74 s=0.058158 p=0.003643
9626069_252 Human papillomavirus type 18 Papillomaviridae 4318 0.016464 0.011036
9626069_269 Human papillomavirus type 18 Papillomaviridae 5396 0.020574 0.005564
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 1808 0.006894 0.011036
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 1513 0.005769 0.005564
9627305_81_rc Human papillomavirus type 26 Papillomaviridae 182 0.000694 0.009812
39457 Human papillomavirus type 70 s=0.040062 p=0.000888
9626069_81 Human papillomavirus type 18 Papillomaviridae 8784 0.033492 0.004751
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 5751 0.021927 0.004751
9626069_80 Human papillomavirus type 18 Papillomaviridae 4615 0.017596 0.005861
9626069_80_rc Human papillomavirus type 18 Papillomaviridae 755 0.002879 0.005861
9627165_84_rc Human papillomavirus type 39 Papillomaviridae 71 0.000271 0.015078
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.018888 p=0.223008
HCMVUL119_359 Human herpesvirus 5 Herpesviridae 245 0.000934 0.004414
HCMVUS26_71 Human herpesvirus 5 Herpesviridae 241 0.000919 0.004261
HCMVUL64_68 Human herpesvirus 5 Herpesviridae 132 0.000503 0.004151
HCMVUL23_165 Human herpesvirus 5 Herpesviridae 102 0.000389 0.004837
9625671_3138 Human herpesvirus 5 Herpesviridae 93 0.000355 0.004744
Family: NA
12475 Hepatitis delta virus s=0.012308 p=0.183336
13277517_1201_P70 Hepatitis delta virus Deltavirus 301 0.001148 0.050159
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 242 0.000923 0.051728
13277517_1511_P70 Hepatitis delta virus Deltavirus 222 0.000846 0.051728
13277517_1385_P70 Hepatitis delta virus Deltavirus 71 0.000271 0.051449
13277517_1255_P70 Hepatitis delta virus Deltavirus 46 0.000175 0.051914
Family: Retroviridae
11802 Murine sarcoma virus s=0.011143 p=0.144924
9626100_20_rc Murine sarcoma virus Retroviridae 104 0.000397 0.015984
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000271 0.018861
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000629 0.007556
9626100_24_rc Murine sarcoma virus Retroviridae 61 0.000233 0.019146
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000419 0.010421
11809 Moloney murine sarcoma virus s=0.011143 p=0.144924
9626100_20_rc Murine sarcoma virus Retroviridae 104 0.000397 0.015984
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000271 0.018861
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000629 0.007556
9626100_24_rc Murine sarcoma virus Retroviridae 61 0.000233 0.019146
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000419 0.010421
11788 Abelson murine leukemia virus s=0.011013 p=0.148890
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000419 0.015940
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000271 0.014886
9626958_329_rc Murine leukemia virus Retroviridae 56 0.000214 0.018825
9626958_331_rc Murine leukemia virus Retroviridae 68 0.000259 0.015548
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000629 0.006152
11786 Murine leukemia virus s=0.010989 p=0.148694
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000419 0.015904
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000271 0.014852
9626958_329_rc Murine leukemia virus Retroviridae 56 0.000214 0.018782
9626958_331_rc Murine leukemia virus Retroviridae 68 0.000259 0.015513
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000629 0.006138
11795 Friend murine leukemia virus s=0.010846 p=0.148516
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000629 0.008193
9626096_5 Friend murine leukemia virus Retroviridae 77 0.000294 0.016053
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000271 0.015628
9626100_24_rc Murine sarcoma virus Retroviridae 61 0.000233 0.015882
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000419 0.008733
Family: Baculoviridae
10450 Orgyia pseudotsugata single capsid nuclo s=0.010715 p=0.051062
11038431_4524 Orgyia pseudotsugata single capsid n Baculoviridae 128 0.000488 0.045723
9634221_4986_rc Spodoptera exigua nucleopolyhedrovir Baculoviridae 561 0.002139 0.005294
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 51 0.000194 0.047648
11038431_118 Orgyia pseudotsugata single capsid n Baculoviridae 47 0.000179 0.042527
11038431_120 Orgyia pseudotsugata single capsid n Baculoviridae 43 0.000164 0.044384
Family: Adenoviridae
129951 Human adenovirus C s=0.010377 p=0.217880
9626158_846 Human adenovirus C Adenoviridae 88 0.000336 0.022453
21407997_849 Human adenovirus B Adenoviridae 223 0.000850 0.008682
9626187_754 Human adenovirus type 5 Adenoviridae 67 0.000255 0.024908
9626158_754 Human adenovirus C Adenoviridae 68 0.000259 0.024229
9626187_866_rc Human adenovirus type 5 Adenoviridae 54 0.000206 0.023147
Iteration: 2
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.034426 p=0.111376
HCMVUL119_359 Human herpesvirus 5 Herpesviridae 245 0.001224 0.004414
HCMVUS26_71 Human herpesvirus 5 Herpesviridae 241 0.001204 0.004261
HCMVUL64_68 Human herpesvirus 5 Herpesviridae 132 0.000659 0.004151
HCMVUL23_165 Human herpesvirus 5 Herpesviridae 102 0.000509 0.004837
9625671_3138 Human herpesvirus 5 Herpesviridae 93 0.000464 0.004744
Family: NA
12475 Hepatitis delta virus s=0.022426 p=0.094174
13277517_1201_P70 Hepatitis delta virus Deltavirus 301 0.001503 0.050159
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 242 0.001209 0.051728
13277517_1511_P70 Hepatitis delta virus Deltavirus 222 0.001109 0.051728
13277517_1385_P70 Hepatitis delta virus Deltavirus 71 0.000355 0.051449
13277517_1255_P70 Hepatitis delta virus Deltavirus 46 0.000230 0.051914
Family: Retroviridae
11802 Murine sarcoma virus s=0.020287 p=0.060726
9626100_20_rc Murine sarcoma virus Retroviridae 104 0.000519 0.015984
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000355 0.018861
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000824 0.007556
9626100_24_rc Murine sarcoma virus Retroviridae 61 0.000305 0.019146
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000549 0.010421
11809 Moloney murine sarcoma virus s=0.020287 p=0.060726
9626100_20_rc Murine sarcoma virus Retroviridae 104 0.000519 0.015984
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000355 0.018861
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000824 0.007556
9626100_24_rc Murine sarcoma virus Retroviridae 61 0.000305 0.019146
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000549 0.010421
11788 Abelson murine leukemia virus s=0.020054 p=0.062986
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000549 0.015940
9626958_331_rc Murine leukemia virus Retroviridae 68 0.000340 0.015548
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000355 0.014886
9626958_329_rc Murine leukemia virus Retroviridae 56 0.000280 0.018825
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000824 0.006152
11786 Murine leukemia virus s=0.020010 p=0.062860
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000549 0.015904
9626958_331_rc Murine leukemia virus Retroviridae 68 0.000340 0.015513
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000355 0.014852
9626958_329_rc Murine leukemia virus Retroviridae 56 0.000280 0.018782
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000824 0.006138
11795 Friend murine leukemia virus s=0.019748 p=0.062609
9630707_20_rc Feline leukemia virus Retroviridae 165 0.000824 0.008193
9626096_5 Friend murine leukemia virus Retroviridae 77 0.000385 0.016053
9626962_5_rc Moloney murine sarcoma virus Retroviridae 71 0.000355 0.015628
9626100_24_rc Murine sarcoma virus Retroviridae 61 0.000305 0.015882
9626958_317_rc Murine leukemia virus Retroviridae 110 0.000549 0.008733
Family: Baculoviridae
10450 Orgyia pseudotsugata single capsid nuclo s=0.019532 p=0.015599
11038431_4524 Orgyia pseudotsugata single capsid n Baculoviridae 128 0.000639 0.045723
9634221_4986_rc Spodoptera exigua nucleopolyhedrovir Baculoviridae 561 0.002802 0.005294
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 51 0.000255 0.047648
11038431_118 Orgyia pseudotsugata single capsid n Baculoviridae 47 0.000235 0.042527
11038431_120 Orgyia pseudotsugata single capsid n Baculoviridae 43 0.000215 0.044384
Family: Adenoviridae
129951 Human adenovirus C s=0.018913 p=0.105661
9626158_846 Human adenovirus C Adenoviridae 88 0.000440 0.022453
21407997_849 Human adenovirus B Adenoviridae 223 0.001114 0.008682
9626187_754 Human adenovirus type 5 Adenoviridae 67 0.000335 0.024908
9626158_754 Human adenovirus C Adenoviridae 68 0.000340 0.024229
9626187_866_rc Human adenovirus type 5 Adenoviridae 54 0.000270 0.023147
Family: Flaviviridae
11082 West Nile virus s=0.013312 p=0.098387
11528013_362_rc West Nile virus Flaviviridae 63 0.000315 0.060149
11528013_433_rc West Nile virus Flaviviridae 50 0.000250 0.058020
11528013_364_rc West Nile virus Flaviviridae 42 0.000210 0.068806
9629456_363_rc Louping ill virus Flaviviridae 158 0.000789 0.014092
11528013_233_rc West Nile virus Flaviviridae 35 0.000175 0.056038
GSM40818
EPREDICT : 2007-03-28 13:44:39 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40818
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40818:GSM40818
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.341316 p=0.003167
9627730_13_rc Human rhinovirus A Picornaviridae 65413 0.009734 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65386 0.009730 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65426 0.009736 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65417 0.009735 0.018468
9627730_22_rc Human rhinovirus A Picornaviridae 65379 0.009729 0.016616
169066 Human rhinovirus sp. s=0.269070 p=0.000001
61098_77 Human rhinovirus sp. Picornaviridae 65437 0.009738 0.039854
61098_77_rc Human rhinovirus sp. Picornaviridae 65434 0.009738 0.039854
61098_58_rc Human rhinovirus sp. Picornaviridae 65444 0.009739 0.036984
61098_58 Human rhinovirus sp. Picornaviridae 65438 0.009738 0.036984
61098_178_rc Human rhinovirus sp. Picornaviridae 65432 0.009737 0.034722
123738 Enterovirus Yanbian 96-83csf s=0.186705 p=0.000362
9627719_18_rc Human enterovirus A Picornaviridae 65432 0.009737 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 65428 0.009737 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65413 0.009734 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65418 0.009735 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65421 0.009736 0.012615
46633 Human echovirus 1 s=0.176866 p=0.000451
21363125_21_rc Human echovirus 1 Picornaviridae 65415 0.009735 0.018603
21363125_18_rc Human echovirus 1 Picornaviridae 65428 0.009737 0.018139
21363125_23_rc Human echovirus 1 Picornaviridae 65444 0.009739 0.014342
9627719_18_rc Human enterovirus A Picornaviridae 65432 0.009737 0.012473
9626677_18_rc Human enterovirus B Picornaviridae 65413 0.009734 0.011222
12090 Human enterovirus D s=0.173426 p=0.000186
9626436_18_rc Human enterovirus 70 Picornaviridae 65427 0.009737 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65426 0.009736 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65404 0.009733 0.018469
12408699_21_rc Poliovirus Picornaviridae 65443 0.009739 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65434 0.009738 0.014212
Family: NA
89463 Sacbrood virus s=0.028068 p=0.002062
9632405_343_rc Sacbrood virus Iflavirus 58025 0.008635 0.063762
9632405_167_rc Sacbrood virus Iflavirus 493 0.000073 0.052637
9632405_343 Sacbrood virus Iflavirus 374 0.000056 0.063762
9632405_347_rc Sacbrood virus Iflavirus 486 0.000072 0.049549
9632405_349_rc Sacbrood virus Iflavirus 325 0.000048 0.042675
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.024306 p=0.003679
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 33274 0.004952 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 13491 0.002008 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 5710 0.000850 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 5003 0.000745 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 1163 0.000173 0.041460
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.010958 p=0.009885
17426217_229 Enterobacteria phage M13 Inoviridae 3038 0.000452 0.115828
17426217_128_rc Enterobacteria phage M13 Inoviridae 2510 0.000374 0.091108
17426217_138 Enterobacteria phage M13 Inoviridae 2022 0.000301 0.099983
17426217_142 Enterobacteria phage M13 Inoviridae 2614 0.000389 0.076782
17426217_25 Enterobacteria phage M13 Inoviridae 2105 0.000313 0.093522
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.007165 p=0.324573
EBV_4540_rc Human herpesvirus 4 Herpesviridae 14040 0.002089 0.014954
EBV_4323_rc Human herpesvirus 4 Herpesviridae 5323 0.000792 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 3599 0.000536 0.013853
EBV_3139_rc Human herpesvirus 4 Herpesviridae 2141 0.000319 0.016043
EBV_6200_rc Human herpesvirus 4 Herpesviridae 1227 0.000183 0.014928
106331 Callitrichine herpesvirus 3 s=0.004464 p=0.131589
EBV_4540_rc Human herpesvirus 4 Herpesviridae 14040 0.002089 0.033193
EBV_6198_rc Human herpesvirus 4 Herpesviridae 431 0.000064 0.059731
EBV_5198_rc Human herpesvirus 4 Herpesviridae 285 0.000042 0.038809
EBV_6187_rc Human herpesvirus 4 Herpesviridae 165 0.000025 0.060944
EB60_6187 Human herpesvirus 4 Herpesviridae 119 0.000018 0.054309
Family: Siphoviridae
31757 Mycobacterium phage L5 s=0.003494 p=0.131471
9625433_791 Mycobacterium phage L5 Siphoviridae 6596 0.000982 0.051988
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 1861 0.000277 0.018768
9630386_496_rc Mycobacteriophage D29 Siphoviridae 650 0.000097 0.017189
9630386_496 Mycobacteriophage D29 Siphoviridae 247 0.000037 0.017189
12657854_478_rc Mycobacteriophage Bxb1 Siphoviridae 95 0.000014 0.041180
Iteration: 2
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.324243 p=0.000001
61098_77 Human rhinovirus sp. Picornaviridae 65437 0.023614 0.039854
61098_77_rc Human rhinovirus sp. Picornaviridae 65434 0.023613 0.039854
61098_58_rc Human rhinovirus sp. Picornaviridae 65444 0.023617 0.036984
61098_58 Human rhinovirus sp. Picornaviridae 65438 0.023614 0.036984
61098_178_rc Human rhinovirus sp. Picornaviridae 65432 0.023612 0.034722
147712 Human rhinovirus B s=0.076968 p=0.002705
9626735_14_rc Human rhinovirus B Picornaviridae 65402 0.023601 0.024898
9626735_20_rc Human rhinovirus B Picornaviridae 65354 0.023584 0.021059
9626735_43_rc Human rhinovirus B Picornaviridae 14204 0.005126 0.019689
9626735_279_rc Human rhinovirus B Picornaviridae 2548 0.000919 0.016567
9626735_229 Human rhinovirus B Picornaviridae 1112 0.000401 0.016022
46633 Human echovirus 1 s=0.051038 p=0.013815
21363125_2 Human echovirus 1 Picornaviridae 30509 0.011010 0.016623
9632987_1_rc Human coxsackievirus B2 Picornaviridae 17102 0.006172 0.011746
9629458_14_rc Human echovirus 12 Picornaviridae 20307 0.007328 0.009697
9632987_14_rc Human coxsackievirus B2 Picornaviridae 11994 0.004328 0.011800
9627719_14_rc Human enterovirus A Picornaviridae 12472 0.004501 0.007800
Family: NA
89463 Sacbrood virus s=0.049284 p=0.000372
9632405_343_rc Sacbrood virus Iflavirus 58025 0.020939 0.063762
9632405_167_rc Sacbrood virus Iflavirus 493 0.000178 0.052637
9632405_347_rc Sacbrood virus Iflavirus 486 0.000175 0.049549
9632405_343 Sacbrood virus Iflavirus 374 0.000135 0.063762
9632405_349_rc Sacbrood virus Iflavirus 325 0.000117 0.042675
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.042666 p=0.000682
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 33274 0.012007 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 13491 0.004868 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 5710 0.002061 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 5003 0.001805 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 1163 0.000420 0.041460
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.019249 p=0.002582
17426217_229 Enterobacteria phage M13 Inoviridae 3038 0.001096 0.115828
17426217_128_rc Enterobacteria phage M13 Inoviridae 2510 0.000906 0.091108
17426217_138 Enterobacteria phage M13 Inoviridae 2022 0.000730 0.099983
17426217_142 Enterobacteria phage M13 Inoviridae 2614 0.000943 0.076782
17426217_25 Enterobacteria phage M13 Inoviridae 2105 0.000760 0.093522
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.012587 p=0.180318
EBV_4540_rc Human herpesvirus 4 Herpesviridae 14040 0.005067 0.014954
EBV_4323_rc Human herpesvirus 4 Herpesviridae 5323 0.001921 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 3599 0.001299 0.013853
EBV_3139_rc Human herpesvirus 4 Herpesviridae 2141 0.000773 0.016043
EBV_6200_rc Human herpesvirus 4 Herpesviridae 1227 0.000443 0.014928
106331 Callitrichine herpesvirus 3 s=0.007847 p=0.052248
EBV_4540_rc Human herpesvirus 4 Herpesviridae 14040 0.005067 0.033193
EBV_6198_rc Human herpesvirus 4 Herpesviridae 431 0.000156 0.059731
EBV_5198_rc Human herpesvirus 4 Herpesviridae 285 0.000103 0.038809
EBV_6187_rc Human herpesvirus 4 Herpesviridae 165 0.000060 0.060944
EB60_6187 Human herpesvirus 4 Herpesviridae 119 0.000043 0.054309
Family: Siphoviridae
31757 Mycobacterium phage L5 s=0.006143 p=0.050098
9625433_791 Mycobacterium phage L5 Siphoviridae 6596 0.002380 0.051988
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 1861 0.000672 0.018768
9630386_496_rc Mycobacteriophage D29 Siphoviridae 650 0.000235 0.017189
9630386_496 Mycobacteriophage D29 Siphoviridae 247 0.000089 0.017189
12657854_478_rc Mycobacteriophage Bxb1 Siphoviridae 95 0.000034 0.041180
GSM40819
EPREDICT : 2007-03-28 13:49:08 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40819
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40819:GSM40819
Iteration: 1
Family: Paramyxoviridae
12814 Respiratory syncytial virus s=0.563060 p=0.000000
9629367_63 Respiratory syncytial virus Paramyxoviridae 59066 0.078887 0.047021
9629367_519 Respiratory syncytial virus Paramyxoviridae 55850 0.074592 0.039895
9631267_463 Bovine respiratory syncytial virus Paramyxoviridae 65489 0.087465 0.024326
9629367_519_rc Respiratory syncytial virus Paramyxoviridae 32272 0.043102 0.039895
9629367_111 Respiratory syncytial virus Paramyxoviridae 25466 0.034012 0.044362
11246 Bovine respiratory syncytial virus s=0.297064 p=0.000000
9631267_463 Bovine respiratory syncytial virus Paramyxoviridae 65489 0.087465 0.049394
9631267_63 Bovine respiratory syncytial virus Paramyxoviridae 30789 0.041121 0.048894
9629367_63 Respiratory syncytial virus Paramyxoviridae 59066 0.078887 0.023265
9631267_130_rc Bovine respiratory syncytial virus Paramyxoviridae 18241 0.024362 0.048894
9631267_504_rc Bovine respiratory syncytial virus Paramyxoviridae 7789 0.010403 0.041789
11250 Human respiratory syncytial virus s=0.296919 p=0.000008
9629198_107 Human respiratory syncytial virus Paramyxoviridae 28373 0.037894 0.045780
9629367_519 Respiratory syncytial virus Paramyxoviridae 55850 0.074592 0.018341
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 14737 0.019682 0.055394
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 19202 0.025646 0.037270
9629367_63 Respiratory syncytial virus Paramyxoviridae 59066 0.078887 0.010181
162145 Turkey rhinotracheitis virus s=0.113212 p=0.000291
22780169_354_rc Human metapneumovirus Paramyxoviridae 32058 0.042816 0.057362
22780169_372 Human metapneumovirus Paramyxoviridae 24131 0.032229 0.055561
22780169_372_rc Human metapneumovirus Paramyxoviridae 8175 0.010918 0.055561
22780169_370 Human metapneumovirus Paramyxoviridae 2409 0.003217 0.050217
22780169_331 Human metapneumovirus Paramyxoviridae 1726 0.002305 0.059561
Family: Picornaviridae
147712 Human rhinovirus B s=0.004919 p=0.392076
9626735_268 Human rhinovirus B Picornaviridae 3713 0.004959 0.013652
9626735_154 Human rhinovirus B Picornaviridae 1070 0.001429 0.018040
9626735_268_rc Human rhinovirus B Picornaviridae 1012 0.001352 0.013652
9626735_218 Human rhinovirus B Picornaviridae 257 0.000343 0.014507
9626735_25_rc Human rhinovirus B Picornaviridae 61 0.000081 0.017261
12090 Human enterovirus D s=0.001476 p=0.787895
9626436_232 Human enterovirus 70 Picornaviridae 586 0.000783 0.029258
9626436_232_rc Human enterovirus 70 Picornaviridae 162 0.000216 0.029258
21363125_21 Human echovirus 1 Picornaviridae 226 0.000302 0.008796
9627719_22 Human enterovirus A Picornaviridae 75 0.000100 0.011222
9626436_21 Human enterovirus 70 Picornaviridae 23 0.000031 0.031978
Family: Adenoviridae
129951 Human adenovirus C s=0.001163 p=0.825452
9626158_868 Human adenovirus C Adenoviridae 159 0.000212 0.029082
9626158_868_rc Human adenovirus C Adenoviridae 115 0.000154 0.029082
9626158_823 Human adenovirus C Adenoviridae 118 0.000158 0.020900
9626158_754 Human adenovirus C Adenoviridae 56 0.000075 0.024229
9626158_823_rc Human adenovirus C Adenoviridae 44 0.000059 0.020900
130309 Human adenovirus F s=0.000805 p=0.856653
9626158_868 Human adenovirus C Adenoviridae 159 0.000212 0.013608
9632407_712 Human adenovirus D Adenoviridae 107 0.000143 0.020159
9626158_868_rc Human adenovirus C Adenoviridae 115 0.000154 0.013608
9626553_707 Human adenovirus F Adenoviridae 36 0.000048 0.033356
9626553_707_rc Human adenovirus F Adenoviridae 28 0.000037 0.033356
129875 Human adenovirus A s=0.000777 p=0.852452
9626621_745 Human adenovirus A Adenoviridae 96 0.000128 0.031120
9632407_712 Human adenovirus D Adenoviridae 107 0.000143 0.019324
9626621_711 Human adenovirus A Adenoviridae 32 0.000043 0.044936
9626158_868 Human adenovirus C Adenoviridae 159 0.000212 0.009034
9626621_745_rc Human adenovirus A Adenoviridae 35 0.000047 0.031120
130310 Human adenovirus D s=0.000727 p=0.899128
9632407_712 Human adenovirus D Adenoviridae 107 0.000143 0.024150
9626158_868 Human adenovirus C Adenoviridae 159 0.000212 0.008259
9626158_868_rc Human adenovirus C Adenoviridae 115 0.000154 0.008259
9626553_707 Human adenovirus F Adenoviridae 36 0.000048 0.015767
9626553_707_rc Human adenovirus F Adenoviridae 28 0.000037 0.015767
130308 Human adenovirus E s=0.000586 p=0.914857
9626158_868 Human adenovirus C Adenoviridae 159 0.000212 0.010126
9626158_868_rc Human adenovirus C Adenoviridae 115 0.000154 0.010126
9632407_712 Human adenovirus D Adenoviridae 107 0.000143 0.009935
9626553_717 Human adenovirus F Adenoviridae 25 0.000033 0.017795
9626553_717_rc Human adenovirus F Adenoviridae 20 0.000027 0.017795
Iteration: 2
Family: Picornaviridae
147712 Human rhinovirus B s=0.010198 p=0.173950
9626735_268 Human rhinovirus B Picornaviridae 3713 0.017594 0.013652
9626735_154 Human rhinovirus B Picornaviridae 1070 0.005070 0.018040
9626735_268_rc Human rhinovirus B Picornaviridae 1012 0.004795 0.013652
9626735_218 Human rhinovirus B Picornaviridae 257 0.001218 0.014507
9626735_25_rc Human rhinovirus B Picornaviridae 61 0.000289 0.017261
12090 Human enterovirus D s=0.003061 p=0.552556
9626436_232 Human enterovirus 70 Picornaviridae 586 0.002777 0.029258
9626436_232_rc Human enterovirus 70 Picornaviridae 162 0.000768 0.029258
21363125_21 Human echovirus 1 Picornaviridae 226 0.001071 0.008796
9627719_22 Human enterovirus A Picornaviridae 75 0.000355 0.011222
9626436_21 Human enterovirus 70 Picornaviridae 23 0.000109 0.031978
Family: Adenoviridae
129951 Human adenovirus C s=0.002414 p=0.642015
9626158_868 Human adenovirus C Adenoviridae 159 0.000753 0.029082
9626158_868_rc Human adenovirus C Adenoviridae 115 0.000545 0.029082
9626158_823 Human adenovirus C Adenoviridae 118 0.000559 0.020900
9626158_754 Human adenovirus C Adenoviridae 56 0.000265 0.024229
9626158_823_rc Human adenovirus C Adenoviridae 44 0.000208 0.020900
130309 Human adenovirus F s=0.001670 p=0.656773
9626158_868 Human adenovirus C Adenoviridae 159 0.000753 0.013608
9632407_712 Human adenovirus D Adenoviridae 107 0.000507 0.020159
9626158_868_rc Human adenovirus C Adenoviridae 115 0.000545 0.013608
9626553_707 Human adenovirus F Adenoviridae 36 0.000171 0.033356
9626553_707_rc Human adenovirus F Adenoviridae 28 0.000133 0.033356
129875 Human adenovirus A s=0.001611 p=0.692205
9626621_745 Human adenovirus A Adenoviridae 96 0.000455 0.031120
9632407_712 Human adenovirus D Adenoviridae 107 0.000507 0.019324
9626621_711 Human adenovirus A Adenoviridae 32 0.000152 0.044936
9626158_868 Human adenovirus C Adenoviridae 159 0.000753 0.009034
9626621_745_rc Human adenovirus A Adenoviridae 35 0.000166 0.031120
130310 Human adenovirus D s=0.001511 p=0.740188
9632407_712 Human adenovirus D Adenoviridae 107 0.000507 0.024150
9626158_868 Human adenovirus C Adenoviridae 159 0.000753 0.008259
9626158_868_rc Human adenovirus C Adenoviridae 115 0.000545 0.008259
9626553_707 Human adenovirus F Adenoviridae 36 0.000171 0.015767
9626553_707_rc Human adenovirus F Adenoviridae 28 0.000133 0.015767
130308 Human adenovirus E s=0.001218 p=0.768624
9626158_868 Human adenovirus C Adenoviridae 159 0.000753 0.010126
9626158_868_rc Human adenovirus C Adenoviridae 115 0.000545 0.010126
9632407_712 Human adenovirus D Adenoviridae 107 0.000507 0.009935
9626553_717 Human adenovirus F Adenoviridae 25 0.000118 0.017795
9626553_717_rc Human adenovirus F Adenoviridae 20 0.000095 0.017795
GSM40820
EPREDICT : 2007-03-28 13:50:55 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40820
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40820:GSM40820
Iteration: 1
Family: Paramyxoviridae
11250 Human respiratory syncytial virus s=0.060807 p=0.001660
9629198_111_rc Human respiratory syncytial virus Paramyxoviridae 5353 0.012510 0.049603
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 3598 0.008409 0.055394
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 1523 0.003559 0.065924
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 1585 0.003704 0.053916
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 2043 0.004774 0.037270
12814 Respiratory syncytial virus s=0.059898 p=0.000404
9629367_111_rc Respiratory syncytial virus Paramyxoviridae 2947 0.006887 0.044362
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 2043 0.004774 0.050854
9629367_63 Respiratory syncytial virus Paramyxoviridae 1459 0.003410 0.047021
9629367_519_rc Respiratory syncytial virus Paramyxoviridae 1592 0.003721 0.039895
9629367_130 Respiratory syncytial virus Paramyxoviridae 1212 0.002832 0.050854
11246 Bovine respiratory syncytial virus s=0.036693 p=0.000989
9631267_130_rc Bovine respiratory syncytial virus Paramyxoviridae 4100 0.009582 0.048894
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 3598 0.008409 0.019006
9631267_463 Bovine respiratory syncytial virus Paramyxoviridae 1280 0.002991 0.049394
9629367_63 Respiratory syncytial virus Paramyxoviridae 1459 0.003410 0.023265
9631267_429_rc Bovine respiratory syncytial virus Paramyxoviridae 710 0.001659 0.045946
162145 Turkey rhinotracheitis virus s=0.011336 p=0.052229
22780169_372 Human metapneumovirus Paramyxoviridae 1287 0.003008 0.055561
22780169_372_rc Human metapneumovirus Paramyxoviridae 616 0.001440 0.055561
22780169_331_rc Human metapneumovirus Paramyxoviridae 495 0.001157 0.059561
22780169_331 Human metapneumovirus Paramyxoviridae 450 0.001052 0.059561
22780169_354 Human metapneumovirus Paramyxoviridae 431 0.001007 0.057362
Family: Picornaviridae
147711 Human rhinovirus A s=0.006864 p=0.530386
9627730_117 Human rhinovirus A Picornaviridae 459 0.001073 0.014170
9627730_25_rc Human rhinovirus A Picornaviridae 429 0.001003 0.014831
61098_13 Human rhinovirus sp. Picornaviridae 546 0.001276 0.008314
453208_13 Human rhinovirus sp. Picornaviridae 594 0.001388 0.007385
9627730_83 Human rhinovirus A Picornaviridae 192 0.000449 0.018605
Family: NA
9606 Homo sapiens s=0.005542 p=0.232905
11228730_382 Human endogenous retrovirus 15 Retroviridae 468 0.001094 0.102523
11228730_388 Human endogenous retrovirus 15 Retroviridae 473 0.001105 0.100253
11228730_388_rc Human endogenous retrovirus 15 Retroviridae 221 0.000516 0.100253
11228730_382_rc Human endogenous retrovirus 15 Retroviridae 145 0.000339 0.102523
11228730_356_rc Human endogenous retrovirus 15 Retroviridae 107 0.000250 0.111858
Family: Potyviridae
12211 Plum pox virus s=0.005445 p=0.206559
9626508_183 Plum pox virus Potyviridae 1328 0.003104 0.090207
9626508_363 Plum pox virus Potyviridae 138 0.000323 0.084943
9626508_310 Plum pox virus Potyviridae 29 0.000068 0.096180
21431571_358 Potato virus V Potyviridae 210 0.000491 0.010769
9626508_183_rc Plum pox virus Potyviridae 17 0.000040 0.090207
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.005364 p=0.577942
9625671_4716_rc Human herpesvirus 5 Herpesviridae 507 0.001185 0.004685
HCMVUS34_305 Human herpesvirus 5 Herpesviridae 457 0.001068 0.004677
HCMVIRL5_118 Human herpesvirus 5 Herpesviridae 227 0.000530 0.005094
HCMVUL111_74 Human herpesvirus 5 Herpesviridae 183 0.000428 0.004811
HCMVUL80_108 Human herpesvirus 5 Herpesviridae 137 0.000320 0.005786
Family: Flaviviridae
39112 Hepatitis GB virus A s=0.005100 p=0.312324
9629718_188 Hepatitis GB virus A Flaviviridae 1180 0.002758 0.092069
9629718_188_rc Hepatitis GB virus A Flaviviridae 132 0.000308 0.092069
9629718_186 Hepatitis GB virus A Flaviviridae 113 0.000264 0.098214
9629718_153 Hepatitis GB virus A Flaviviridae 69 0.000161 0.111479
9629718_329 Hepatitis GB virus A Flaviviridae 36 0.000084 0.096969
Iteration: 2
Family: Picornaviridae
147711 Human rhinovirus A s=0.006902 p=0.528808
9627730_117 Human rhinovirus A Picornaviridae 459 0.001191 0.014170
9627730_25_rc Human rhinovirus A Picornaviridae 429 0.001114 0.014831
61098_13 Human rhinovirus sp. Picornaviridae 546 0.001417 0.008314
453208_13 Human rhinovirus sp. Picornaviridae 594 0.001542 0.007385
9627730_83 Human rhinovirus A Picornaviridae 192 0.000498 0.018605
Family: NA
9606 Homo sapiens s=0.005574 p=0.231871
11228730_382 Human endogenous retrovirus 15 Retroviridae 468 0.001215 0.102523
11228730_388 Human endogenous retrovirus 15 Retroviridae 473 0.001228 0.100253
11228730_388_rc Human endogenous retrovirus 15 Retroviridae 221 0.000574 0.100253
11228730_382_rc Human endogenous retrovirus 15 Retroviridae 145 0.000376 0.102523
11228730_356_rc Human endogenous retrovirus 15 Retroviridae 107 0.000278 0.111858
Family: Potyviridae
12211 Plum pox virus s=0.005475 p=0.205589
9626508_183 Plum pox virus Potyviridae 1328 0.003447 0.090207
9626508_363 Plum pox virus Potyviridae 138 0.000358 0.084943
9626508_310 Plum pox virus Potyviridae 29 0.000075 0.096180
21431571_358 Potato virus V Potyviridae 210 0.000545 0.010769
9626508_183_rc Plum pox virus Potyviridae 17 0.000044 0.090207
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.005397 p=0.576114
9625671_4716_rc Human herpesvirus 5 Herpesviridae 507 0.001316 0.004685
HCMVUS34_305 Human herpesvirus 5 Herpesviridae 457 0.001186 0.004677
HCMVIRL5_118 Human herpesvirus 5 Herpesviridae 227 0.000589 0.005094
HCMVUL111_74 Human herpesvirus 5 Herpesviridae 183 0.000475 0.004811
HCMVUL80_108 Human herpesvirus 5 Herpesviridae 137 0.000356 0.005786
Family: Flaviviridae
39112 Hepatitis GB virus A s=0.005127 p=0.311064
9629718_188 Hepatitis GB virus A Flaviviridae 1180 0.003063 0.092069
9629718_188_rc Hepatitis GB virus A Flaviviridae 132 0.000343 0.092069
9629718_186 Hepatitis GB virus A Flaviviridae 113 0.000293 0.098214
9629718_153 Hepatitis GB virus A Flaviviridae 69 0.000179 0.111479
9629718_329 Hepatitis GB virus A Flaviviridae 36 0.000093 0.096969
Family: Polyomaviridae
10633 Simian virus 40 s=0.004015 p=0.374000
9628421_25 Simian virus 40 Polyomaviridae 574 0.001490 0.088121
9628421_25_rc Simian virus 40 Polyomaviridae 161 0.000418 0.088121
9628642_23 JC virus Polyomaviridae 272 0.000706 0.032633
9628421_23 Simian virus 40 Polyomaviridae 101 0.000262 0.082917
9628421_86 Simian virus 40 Polyomaviridae 38 0.000099 0.071104
GSM40821
EPREDICT : 2007-03-28 13:53:55 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40821
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40821:GSM40821
Iteration: 1
Family: Hepadnaviridae
113194 Orangutan hepadnavirus s=0.148865 p=0.002291
9634216_16 Orangutan hepadnavirus Hepadnaviridae 357 0.004507 0.029097
9634216_11_rc Orangutan hepadnavirus Hepadnaviridae 308 0.003888 0.033380
21326584_16 Hepatitis B virus Hepadnaviridae 403 0.005087 0.024385
9634216_11 Orangutan hepadnavirus Hepadnaviridae 288 0.003636 0.033380
9630370_16 Woolly monkey hepatitis B Virus Hepadnaviridae 464 0.005857 0.017055
10407 Hepatitis B virus s=0.147182 p=0.002376
9628700_20 Hepatitis B virus Hepadnaviridae 352 0.004444 0.030419
21326584_16 Hepatitis B virus Hepadnaviridae 403 0.005087 0.026141
9628700_11_rc Hepatitis B virus Hepadnaviridae 316 0.003989 0.026141
9634216_16 Orangutan hepadnavirus Hepadnaviridae 357 0.004507 0.023038
21326584_25 Hepatitis B virus Hepadnaviridae 262 0.003307 0.029656
68416 Woolly monkey hepatitis B Virus s=0.128919 p=0.002840
9630370_16 Woolly monkey hepatitis B Virus Hepadnaviridae 464 0.005857 0.034987
9630370_29 Woolly monkey hepatitis B Virus Hepadnaviridae 272 0.003434 0.037593
9634216_16 Orangutan hepadnavirus Hepadnaviridae 357 0.004507 0.019617
9630370_16_rc Woolly monkey hepatitis B Virus Hepadnaviridae 198 0.002500 0.034987
9630370_25_rc Woolly monkey hepatitis B Virus Hepadnaviridae 174 0.002197 0.039359
35269 Woodchuck hepatitis B virus s=0.109640 p=0.002716
9628827_76_rc Arctic ground squirrel hepatitis B v Hepadnaviridae 431 0.005441 0.035762
9628827_76 Arctic ground squirrel hepatitis B v Hepadnaviridae 330 0.004166 0.035762
9626714_70 Ground squirrel hepatitis virus Hepadnaviridae 312 0.003939 0.025070
9626714_86 Ground squirrel hepatitis virus Hepadnaviridae 228 0.002878 0.032317
21326584_16 Hepatitis B virus Hepadnaviridae 403 0.005087 0.016707
41952 Arctic ground squirrel hepatitis B virus s=0.103357 p=0.003227
9628827_76_rc Arctic ground squirrel hepatitis B v Hepadnaviridae 431 0.005441 0.039813
9628827_76 Arctic ground squirrel hepatitis B v Hepadnaviridae 330 0.004166 0.039813
9626714_86 Ground squirrel hepatitis virus Hepadnaviridae 228 0.002878 0.033897
21326584_16 Hepatitis B virus Hepadnaviridae 403 0.005087 0.013203
9626714_70 Ground squirrel hepatitis virus Hepadnaviridae 312 0.003939 0.015734
Family: Herpesviridae
10372 Human herpesvirus 7 s=0.026945 p=0.118854
9628718_5768 Human herpesvirus 7 Herpesviridae 93 0.001174 0.040365
9628718_5765 Human herpesvirus 7 Herpesviridae 56 0.000707 0.066656
9628718_5767 Human herpesvirus 7 Herpesviridae 59 0.000745 0.063251
9628718_5766 Human herpesvirus 7 Herpesviridae 52 0.000656 0.065064
9628718_5776 Human herpesvirus 7 Herpesviridae 67 0.000846 0.035175
Iteration: 2
Family: Herpesviridae
10372 Human herpesvirus 7 s=0.027695 p=0.115691
9628718_5768 Human herpesvirus 7 Herpesviridae 93 0.001300 0.040365
9628718_5765 Human herpesvirus 7 Herpesviridae 56 0.000783 0.066656
9628718_5767 Human herpesvirus 7 Herpesviridae 59 0.000825 0.063251
9628718_5766 Human herpesvirus 7 Herpesviridae 52 0.000727 0.065064
9628718_5776 Human herpesvirus 7 Herpesviridae 67 0.000937 0.035175
GSM40822
EPREDICT : 2007-03-28 13:55:34 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40822
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40822:GSM40822
Iteration: 1
Family: Orthomyxoviridae
183764 Influenza A virus s=0.371354 p=0.000000
8486129_2_rc Influenza A virus Orthomyxoviridae 15517 0.447419 0.075257
8486129_20_rc Influenza A virus Orthomyxoviridae 2494 0.071912 0.061872
8486125_53 Influenza A virus Orthomyxoviridae 2458 0.070874 0.037033
8486129_29 Influenza A virus Orthomyxoviridae 1235 0.035610 0.063151
8486129_38 Influenza A virus Orthomyxoviridae 380 0.010957 0.068267
11320 Influenza A virus s=0.369079 p=0.000000
8486129_2_rc Influenza A virus Orthomyxoviridae 15517 0.447419 0.073315
8486129_20_rc Influenza A virus Orthomyxoviridae 2494 0.071912 0.073178
8486125_53 Influenza A virus Orthomyxoviridae 2458 0.070874 0.036078
8486129_29 Influenza A virus Orthomyxoviridae 1235 0.035610 0.061521
8486129_38 Influenza A virus Orthomyxoviridae 380 0.010957 0.066505
130760 Influenza A virus s=0.186314 p=0.000028
8486129_2_rc Influenza A virus Orthomyxoviridae 15517 0.447419 0.070929
8486129_29 Influenza A virus Orthomyxoviridae 1235 0.035610 0.060575
8486129_29_rc Influenza A virus Orthomyxoviridae 376 0.010842 0.060575
8486129_56 Influenza A virus Orthomyxoviridae 5 0.000144 0.207068
8486129_59_rc Influenza A virus Orthomyxoviridae 2 0.000058 0.161429
Iteration: 2
***** No hits found! *****
GSM40823
EPREDICT : 2007-03-28 13:57:11 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40823
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40823:GSM40823
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.311989 p=0.003845
9627730_13_rc Human rhinovirus A Picornaviridae 65466 0.014802 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65469 0.014803 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65478 0.014805 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65474 0.014804 0.018468
9627730_22_rc Human rhinovirus A Picornaviridae 65456 0.014800 0.016616
147712 Human rhinovirus B s=0.198040 p=0.000135
9626735_18_rc Human rhinovirus B Picornaviridae 65465 0.014802 0.022396
9626735_14_rc Human rhinovirus B Picornaviridae 57319 0.012960 0.024898
9626735_82_rc Human rhinovirus B Picornaviridae 65482 0.014806 0.020178
9626735_22_rc Human rhinovirus B Picornaviridae 65443 0.014797 0.019391
9626735_20_rc Human rhinovirus B Picornaviridae 58190 0.013157 0.021059
169066 Human rhinovirus sp. s=0.159304 p=0.000012
61098_178 Human rhinovirus sp. Picornaviridae 65469 0.014803 0.034722
61098_131_rc Human rhinovirus sp. Picornaviridae 65478 0.014805 0.032392
61098_77_rc Human rhinovirus sp. Picornaviridae 48881 0.011052 0.039854
61098_255 Human rhinovirus sp. Picornaviridae 54916 0.012417 0.029611
9626735_18_rc Human rhinovirus B Picornaviridae 65465 0.014802 0.007486
12090 Human enterovirus D s=0.144225 p=0.000348
9626436_18_rc Human enterovirus 70 Picornaviridae 59350 0.013419 0.033147
9626433_17_rc Human enterovirus C Picornaviridae 65463 0.014801 0.018469
12408699_21_rc Poliovirus Picornaviridae 42234 0.009549 0.018381
12408699_18_rc Poliovirus Picornaviridae 65466 0.014802 0.010949
9626436_21_rc Human enterovirus 70 Picornaviridae 20173 0.004561 0.031978
123738 Enterovirus Yanbian 96-83csf s=0.143252 p=0.000835
9626677_18_rc Human enterovirus B Picornaviridae 62611 0.014157 0.013331
21363125_18_rc Human echovirus 1 Picornaviridae 59248 0.013396 0.013713
9626677_22_rc Human enterovirus B Picornaviridae 48707 0.011013 0.012676
9626433_17_rc Human enterovirus C Picornaviridae 65463 0.014801 0.007690
9627719_22_rc Human enterovirus A Picornaviridae 38430 0.008689 0.012615
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.010941 p=0.026212
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 7980 0.001804 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 4716 0.001066 0.052060
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 4147 0.000938 0.051960
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 2402 0.000543 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 1713 0.000387 0.055619
Family: NA
89463 Sacbrood virus s=0.003562 p=0.154032
9632405_343_rc Sacbrood virus Iflavirus 5473 0.001237 0.063762
9632405_347_rc Sacbrood virus Iflavirus 211 0.000048 0.049549
9632405_343 Sacbrood virus Iflavirus 143 0.000032 0.063762
9632405_349_rc Sacbrood virus Iflavirus 122 0.000028 0.042675
9632405_351_rc Sacbrood virus Iflavirus 121 0.000027 0.042383
141860 Grapevine fanleaf virus satellite RNA s=0.002949 p=0.160348
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 2293 0.000518 0.061403
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 1245 0.000281 0.071992
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 1318 0.000298 0.067655
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 93 0.000021 0.072605
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 103 0.000023 0.060503
Family: Herpesviridae
188763 Chimpanzee cytomegalovirus s=0.002612 p=0.682728
9625671_3107 Human herpesvirus 5 Herpesviridae 2871 0.000649 0.019411
9625671_3108 Human herpesvirus 5 Herpesviridae 4632 0.001047 0.011401
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 1258 0.000284 0.004062
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1299 0.000294 0.002069
14250967_5770_rc Tupaiid herpesvirus 1 Herpesviridae 483 0.000109 0.005449
10359 Human herpesvirus 5 s=0.002058 p=0.822834
9625671_3108 Human herpesvirus 5 Herpesviridae 4632 0.001047 0.005138
9625671_3107 Human herpesvirus 5 Herpesviridae 2871 0.000649 0.005685
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 1258 0.000284 0.004454
HCMVUL125_14 Human herpesvirus 5 Herpesviridae 649 0.000147 0.003820
HCMVUS32_95 Human herpesvirus 5 Herpesviridae 293 0.000066 0.005217
10376 Human herpesvirus 4 s=0.001999 p=0.720870
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1299 0.000294 0.013853
EBV_4323_rc Human herpesvirus 4 Herpesviridae 720 0.000163 0.016287
EBV_6205_rc Human herpesvirus 4 Herpesviridae 577 0.000130 0.017283
EBV_4535_rc Human herpesvirus 4 Herpesviridae 557 0.000126 0.017003
EBV_4540_rc Human herpesvirus 4 Herpesviridae 516 0.000117 0.014954
Family: Adenoviridae
129951 Human adenovirus C s=0.001314 p=0.799728
9626187_859_rc Human adenovirus type 5 Adenoviridae 754 0.000170 0.022130
9626187_754_rc Human adenovirus type 5 Adenoviridae 379 0.000086 0.024908
9626621_711 Human adenovirus A Adenoviridae 938 0.000212 0.009534
9626158_268_rc Human adenovirus C Adenoviridae 261 0.000059 0.026380
9626553_810_rc Human adenovirus F Adenoviridae 620 0.000140 0.011042
Family: Siphoviridae
151534 Bacteriophage bIL311 s=0.001242 p=0.305858
13095658_419_rc Bacteriophage bIL311 Siphoviridae 995 0.000225 0.068105
13095658_493_rc Bacteriophage bIL311 Siphoviridae 694 0.000157 0.067644
13095658_513_rc Bacteriophage bIL311 Siphoviridae 225 0.000051 0.063269
13095658_502_rc Bacteriophage bIL311 Siphoviridae 44 0.000010 0.077652
13095658_502 Bacteriophage bIL311 Siphoviridae 34 0.000008 0.077652
Iteration: 2
Family: Picornaviridae
147712 Human rhinovirus B s=0.166293 p=0.000247
9626735_14_rc Human rhinovirus B Picornaviridae 57319 0.039364 0.024898
9626735_82_rc Human rhinovirus B Picornaviridae 65482 0.044970 0.020178
9626735_20_rc Human rhinovirus B Picornaviridae 58190 0.039962 0.021059
9626735_43_rc Human rhinovirus B Picornaviridae 57102 0.039215 0.019689
9626735_3 Human rhinovirus B Picornaviridae 7257 0.004984 0.019131
169066 Human rhinovirus sp. s=0.162249 p=0.000012
61098_178 Human rhinovirus sp. Picornaviridae 65469 0.044961 0.034722
61098_131_rc Human rhinovirus sp. Picornaviridae 65478 0.044967 0.032392
61098_77_rc Human rhinovirus sp. Picornaviridae 48881 0.033569 0.039854
61098_276 Human rhinovirus sp. Picornaviridae 1970 0.001353 0.037355
61098_276_rc Human rhinovirus sp. Picornaviridae 1785 0.001226 0.037355
138948 Human enterovirus A s=0.033282 p=0.025047
9627719_14_rc Human enterovirus A Picornaviridae 18689 0.012835 0.020675
9627719_10 Human enterovirus A Picornaviridae 5220 0.003585 0.014991
9627719_10_rc Human enterovirus A Picornaviridae 4039 0.002774 0.014991
9627719_1_rc Human enterovirus A Picornaviridae 1932 0.001327 0.016586
9632987_1_rc Human coxsackievirus B2 Picornaviridae 3752 0.002577 0.007896
123738 Enterovirus Yanbian 96-83csf s=0.023997 p=0.061478
9627719_14_rc Human enterovirus A Picornaviridae 18689 0.012835 0.010612
21363125_2 Human echovirus 1 Picornaviridae 5655 0.003884 0.011270
9632987_1_rc Human coxsackievirus B2 Picornaviridae 3752 0.002577 0.013205
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 3127 0.002147 0.012188
9632987_14_rc Human coxsackievirus B2 Picornaviridae 2424 0.001665 0.012676
46633 Human echovirus 1 s=0.022923 p=0.068993
9627719_14_rc Human enterovirus A Picornaviridae 18689 0.012835 0.007800
21363125_2 Human echovirus 1 Picornaviridae 5655 0.003884 0.016623
9632987_1_rc Human coxsackievirus B2 Picornaviridae 3752 0.002577 0.011746
9627719_10 Human enterovirus A Picornaviridae 5220 0.003585 0.005977
9632987_14_rc Human coxsackievirus B2 Picornaviridae 2424 0.001665 0.011800
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.021166 p=0.005358
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 7980 0.005480 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 4716 0.003239 0.052060
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 4147 0.002848 0.051960
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 2402 0.001650 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 1713 0.001176 0.055619
Family: NA
89463 Sacbrood virus s=0.006884 p=0.053749
9632405_343_rc Sacbrood virus Iflavirus 5473 0.003759 0.063762
9632405_347_rc Sacbrood virus Iflavirus 211 0.000145 0.049549
9632405_343 Sacbrood virus Iflavirus 143 0.000098 0.063762
9632405_349_rc Sacbrood virus Iflavirus 122 0.000084 0.042675
9632405_351_rc Sacbrood virus Iflavirus 121 0.000083 0.042383
141860 Grapevine fanleaf virus satellite RNA s=0.005715 p=0.054652
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 2293 0.001575 0.061403
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 1245 0.000855 0.071992
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 1318 0.000905 0.067655
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 93 0.000064 0.072605
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 103 0.000071 0.060503
Family: Herpesviridae
188763 Chimpanzee cytomegalovirus s=0.005054 p=0.489416
9625671_3107 Human herpesvirus 5 Herpesviridae 2871 0.001972 0.019411
9625671_3108 Human herpesvirus 5 Herpesviridae 4632 0.003181 0.011401
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 1258 0.000864 0.004062
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1299 0.000892 0.002069
14250967_5770_rc Tupaiid herpesvirus 1 Herpesviridae 483 0.000332 0.005449
10359 Human herpesvirus 5 s=0.003976 p=0.664465
9625671_3108 Human herpesvirus 5 Herpesviridae 4632 0.003181 0.005138
9625671_3107 Human herpesvirus 5 Herpesviridae 2871 0.001972 0.005685
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 1258 0.000864 0.004454
HCMVUL125_14 Human herpesvirus 5 Herpesviridae 649 0.000446 0.003820
HCMVUS32_95 Human herpesvirus 5 Herpesviridae 293 0.000201 0.005217
10376 Human herpesvirus 4 s=0.003863 p=0.519349
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1299 0.000892 0.013853
EBV_4323_rc Human herpesvirus 4 Herpesviridae 720 0.000494 0.016287
EBV_6205_rc Human herpesvirus 4 Herpesviridae 577 0.000396 0.017283
EBV_4535_rc Human herpesvirus 4 Herpesviridae 557 0.000383 0.017003
EBV_4540_rc Human herpesvirus 4 Herpesviridae 516 0.000354 0.014954
Family: Adenoviridae
129951 Human adenovirus C s=0.002533 p=0.627836
9626187_859_rc Human adenovirus type 5 Adenoviridae 754 0.000518 0.022130
9626187_754_rc Human adenovirus type 5 Adenoviridae 379 0.000260 0.024908
9626621_711 Human adenovirus A Adenoviridae 938 0.000644 0.009534
9626158_268_rc Human adenovirus C Adenoviridae 261 0.000179 0.026380
9626553_810_rc Human adenovirus F Adenoviridae 620 0.000426 0.011042
Family: Siphoviridae
151534 Bacteriophage bIL311 s=0.002400 p=0.113645
13095658_419_rc Bacteriophage bIL311 Siphoviridae 995 0.000683 0.068105
13095658_493_rc Bacteriophage bIL311 Siphoviridae 694 0.000477 0.067644
13095658_513_rc Bacteriophage bIL311 Siphoviridae 225 0.000155 0.063269
13095658_502_rc Bacteriophage bIL311 Siphoviridae 44 0.000030 0.077652
13095658_502 Bacteriophage bIL311 Siphoviridae 34 0.000023 0.077652
GSM40824
EPREDICT : 2007-03-28 13:59:30 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40824
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40824:GSM40824
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.290499 p=0.004472
9627730_13_rc Human rhinovirus A Picornaviridae 65458 0.018802 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65458 0.018802 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65446 0.018798 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65454 0.018800 0.018468
9627730_22_rc Human rhinovirus A Picornaviridae 65453 0.018800 0.016616
147712 Human rhinovirus B s=0.186252 p=0.000167
9626735_18_rc Human rhinovirus B Picornaviridae 65260 0.018745 0.022396
9626735_14_rc Human rhinovirus B Picornaviridae 52743 0.015149 0.024898
9626735_20_rc Human rhinovirus B Picornaviridae 59454 0.017077 0.021059
9626735_22_rc Human rhinovirus B Picornaviridae 62963 0.018085 0.019391
9626735_43_rc Human rhinovirus B Picornaviridae 45637 0.013108 0.019689
123738 Enterovirus Yanbian 96-83csf s=0.164340 p=0.000545
21363125_18_rc Human echovirus 1 Picornaviridae 60276 0.017313 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 58526 0.016810 0.013331
9627719_22_rc Human enterovirus A Picornaviridae 53089 0.015249 0.012615
9627719_18_rc Human enterovirus A Picornaviridae 38703 0.011117 0.014625
9626677_22_rc Human enterovirus B Picornaviridae 44359 0.012741 0.012676
12090 Human enterovirus D s=0.163119 p=0.000230
9626436_18_rc Human enterovirus 70 Picornaviridae 49103 0.014104 0.033147
9626433_17_rc Human enterovirus C Picornaviridae 65444 0.018798 0.018469
9626436_21_rc Human enterovirus 70 Picornaviridae 27957 0.008030 0.031978
12408699_18_rc Poliovirus Picornaviridae 65459 0.018802 0.010949
9629634_21_rc Porcine enterovirus B Picornaviridae 48252 0.013859 0.014212
138953 Poliovirus s=0.152820 p=0.000192
12408699_18_rc Poliovirus Picornaviridae 65459 0.018802 0.028609
9626433_17_rc Human enterovirus C Picornaviridae 65444 0.018798 0.017603
12408699_21_rc Poliovirus Picornaviridae 32466 0.009325 0.030078
9626436_18_rc Human enterovirus 70 Picornaviridae 49103 0.014104 0.010854
9629634_21_rc Porcine enterovirus B Picornaviridae 48252 0.013859 0.010822
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.006545 p=0.071742
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 9066 0.002604 0.051960
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 1410 0.000405 0.055619
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 760 0.000218 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 516 0.000148 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 147 0.000042 0.041460
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.000999 p=0.875080
EBV_4323_rc Human herpesvirus 4 Herpesviridae 1267 0.000364 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1197 0.000344 0.013853
EBV_3139_rc Human herpesvirus 4 Herpesviridae 82 0.000024 0.016043
EBV_4540_rc Human herpesvirus 4 Herpesviridae 85 0.000024 0.014954
EBV_4535_rc Human herpesvirus 4 Herpesviridae 55 0.000016 0.017003
Family: Adenoviridae
129951 Human adenovirus C s=0.000329 p=0.972962
9626187_754_rc Human adenovirus type 5 Adenoviridae 192 0.000055 0.024908
9626158_846_rc Human adenovirus C Adenoviridae 106 0.000030 0.022453
9626553_810_rc Human adenovirus F Adenoviridae 178 0.000051 0.011042
9626187_866_rc Human adenovirus type 5 Adenoviridae 61 0.000018 0.023147
9626158_846 Human adenovirus C Adenoviridae 41 0.000012 0.022453
130309 Human adenovirus F s=0.000283 p=0.977962
9626553_810_rc Human adenovirus F Adenoviridae 178 0.000051 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 54 0.000016 0.033578
9626187_754_rc Human adenovirus type 5 Adenoviridae 192 0.000055 0.005638
9626187_866_rc Human adenovirus type 5 Adenoviridae 61 0.000018 0.013013
9632407_712_rc Human adenovirus D Adenoviridae 38 0.000011 0.020159
Family: Paramyxoviridae
11216 Human parainfluenza virus 3 s=0.000265 p=0.926462
10937870_412_rc Human parainfluenza virus 3 Paramyxoviridae 263 0.000076 0.049159
9627219_44 Sendai virus Paramyxoviridae 265 0.000076 0.016992
9634109_530_rc Bovine parainfluenza virus 3 Paramyxoviridae 101 0.000029 0.010528
10937870_412 Human parainfluenza virus 3 Paramyxoviridae 14 0.000004 0.049159
10937870_410_rc Human parainfluenza virus 3 Paramyxoviridae 10 0.000003 0.048104
11215 Bovine parainfluenza virus 3 s=0.000226 p=0.941100
9634109_530_rc Bovine parainfluenza virus 3 Paramyxoviridae 101 0.000029 0.055431
10937870_412_rc Human parainfluenza virus 3 Paramyxoviridae 263 0.000076 0.014308
9627219_44 Sendai virus Paramyxoviridae 265 0.000076 0.014187
9634109_374 Bovine parainfluenza virus 3 Paramyxoviridae 36 0.000010 0.054956
9634109_411_rc Bovine parainfluenza virus 3 Paramyxoviridae 36 0.000010 0.050429
Iteration: 2
Family: Picornaviridae
147712 Human rhinovirus B s=0.167811 p=0.000240
9626735_14_rc Human rhinovirus B Picornaviridae 52743 0.058412 0.024898
9626735_20_rc Human rhinovirus B Picornaviridae 59454 0.065844 0.021059
9626735_43_rc Human rhinovirus B Picornaviridae 45637 0.050542 0.019689
9626735_229_rc Human rhinovirus B Picornaviridae 23303 0.025808 0.016022
9626735_229 Human rhinovirus B Picornaviridae 23023 0.025498 0.016022
169066 Human rhinovirus sp. s=0.045987 p=0.001173
61098_178 Human rhinovirus sp. Picornaviridae 40410 0.044753 0.034722
61098_187 Human rhinovirus sp. Picornaviridae 1672 0.001852 0.036614
61098_31_rc Human rhinovirus sp. Picornaviridae 1327 0.001470 0.034650
61098_77 Human rhinovirus sp. Picornaviridae 465 0.000515 0.039854
61098_45_rc Human rhinovirus sp. Picornaviridae 197 0.000218 0.033441
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.013923 p=0.015261
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 9066 0.010040 0.051960
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 1410 0.001562 0.055619
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 760 0.000842 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 516 0.000571 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 147 0.000163 0.041460
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.002117 p=0.704948
EBV_4323_rc Human herpesvirus 4 Herpesviridae 1267 0.001403 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1197 0.001326 0.013853
EBV_3139_rc Human herpesvirus 4 Herpesviridae 82 0.000091 0.016043
EBV_4540_rc Human herpesvirus 4 Herpesviridae 85 0.000094 0.014954
EBV_4322_rc Human herpesvirus 4 Herpesviridae 60 0.000066 0.015747
Family: Adenoviridae
129951 Human adenovirus C s=0.000699 p=0.909136
9626187_754_rc Human adenovirus type 5 Adenoviridae 192 0.000213 0.024908
9626158_846_rc Human adenovirus C Adenoviridae 106 0.000117 0.022453
9626553_810_rc Human adenovirus F Adenoviridae 178 0.000197 0.011042
9626187_866_rc Human adenovirus type 5 Adenoviridae 61 0.000068 0.023147
9626158_846 Human adenovirus C Adenoviridae 41 0.000045 0.022453
130309 Human adenovirus F s=0.000601 p=0.908309
9626553_810_rc Human adenovirus F Adenoviridae 178 0.000197 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 54 0.000060 0.033578
9626187_754_rc Human adenovirus type 5 Adenoviridae 192 0.000213 0.005638
9626187_866_rc Human adenovirus type 5 Adenoviridae 61 0.000068 0.013013
9632407_712_rc Human adenovirus D Adenoviridae 38 0.000042 0.020159
Family: Paramyxoviridae
11216 Human parainfluenza virus 3 s=0.000570 p=0.776051
10937870_412_rc Human parainfluenza virus 3 Paramyxoviridae 263 0.000291 0.049159
9627219_44 Sendai virus Paramyxoviridae 265 0.000293 0.016992
9634109_530_rc Bovine parainfluenza virus 3 Paramyxoviridae 101 0.000112 0.010528
10937870_412 Human parainfluenza virus 3 Paramyxoviridae 14 0.000016 0.049159
10937870_403_rc Human parainfluenza virus 3 Paramyxoviridae 12 0.000013 0.046853
11215 Bovine parainfluenza virus 3 s=0.000486 p=0.824171
9634109_530_rc Bovine parainfluenza virus 3 Paramyxoviridae 101 0.000112 0.055431
10937870_412_rc Human parainfluenza virus 3 Paramyxoviridae 263 0.000291 0.014308
9627219_44 Sendai virus Paramyxoviridae 265 0.000293 0.014187
9634109_374 Bovine parainfluenza virus 3 Paramyxoviridae 36 0.000040 0.054956
9634109_411_rc Bovine parainfluenza virus 3 Paramyxoviridae 36 0.000040 0.050429
GSM40825
EPREDICT : 2007-03-28 14:01:19 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40825
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40825:GSM40825
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.081536 p=0.000827
9626069_81 Human papillomavirus type 18 Papillomaviridae 4233 0.038987 0.031469
9626069_80 Human papillomavirus type 18 Papillomaviridae 1830 0.016855 0.030247
9626069_263_rc Human papillomavirus type 18 Papillomaviridae 1375 0.012664 0.031664
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 1062 0.009781 0.028366
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 749 0.006898 0.036179
10593 Human papillomavirus type 45 s=0.025052 p=0.029157
9626069_81 Human papillomavirus type 18 Papillomaviridae 4233 0.038987 0.007905
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 1062 0.009781 0.012905
9627356_269_rc Human papillomavirus type 45 Papillomaviridae 440 0.004052 0.030872
9626069_80 Human papillomavirus type 18 Papillomaviridae 1830 0.016855 0.006910
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 749 0.006898 0.009866
37115 Human papillomavirus type 59 s=0.017081 p=0.009258
9627962_252 Human papillomavirus type 59 Papillomaviridae 1047 0.009643 0.051293
9626069_81 Human papillomavirus type 18 Papillomaviridae 4233 0.038987 0.007122
9626069_252 Human papillomavirus type 18 Papillomaviridae 934 0.008602 0.030317
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 125 0.001151 0.030317
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 429 0.003951 0.007122
10580 Human papillomavirus type 11 s=0.008822 p=0.089852
9627090_269_rc Human papillomavirus type 11 Papillomaviridae 429 0.003951 0.037951
9626069_263_rc Human papillomavirus type 18 Papillomaviridae 1375 0.012664 0.004557
9627118_263_rc Human papillomavirus type 33 Papillomaviridae 784 0.007221 0.005486
9628412_270_rc Human papillomavirus type 6a Papillomaviridae 239 0.002201 0.016010
9626069_252 Human papillomavirus type 18 Papillomaviridae 934 0.008602 0.003506
44028 Human papillomavirus type 74 s=0.008654 p=0.121237
9626069_252 Human papillomavirus type 18 Papillomaviridae 934 0.008602 0.011036
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 1062 0.009781 0.005564
13128941_255 Human papillomavirus type 84 Papillomaviridae 749 0.006898 0.007373
9627305_81 Human papillomavirus type 26 Papillomaviridae 404 0.003721 0.009812
15789195_255 Human papillomavirus type 86 Papillomaviridae 239 0.002201 0.007168
Iteration: 2
***** No hits found! *****
GSM40826
EPREDICT : 2007-03-28 14:03:03 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40826
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40826:GSM40826
Iteration: 1
Family: Picornaviridae
147712 Human rhinovirus B s=0.318888 p=0.000023
9626735_14_rc Human rhinovirus B Picornaviridae 65441 0.027180 0.024898
9626735_16_rc Human rhinovirus B Picornaviridae 65449 0.027184 0.023121
9626735_18_rc Human rhinovirus B Picornaviridae 65443 0.027181 0.022396
9626735_20_rc Human rhinovirus B Picornaviridae 65440 0.027180 0.021059
9626735_8_rc Human rhinovirus B Picornaviridae 65432 0.027177 0.020065
123738 Enterovirus Yanbian 96-83csf s=0.309367 p=0.000063
9629181_13_rc Human enterovirus 71 Picornaviridae 65457 0.027187 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 65439 0.027180 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65456 0.027187 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65455 0.027186 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65454 0.027186 0.012615
138948 Human enterovirus A s=0.288694 p=0.000046
9627719_22_rc Human enterovirus A Picornaviridae 65454 0.027186 0.015851
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65454 0.027186 0.015822
9627719_14_rc Human enterovirus A Picornaviridae 44153 0.018339 0.020675
9626677_18_rc Human enterovirus B Picornaviridae 65456 0.027187 0.011370
9629181_13_rc Human enterovirus 71 Picornaviridae 65457 0.027187 0.010883
46633 Human echovirus 1 s=0.280943 p=0.000094
21363125_21_rc Human echovirus 1 Picornaviridae 65441 0.027180 0.018603
21363125_18_rc Human echovirus 1 Picornaviridae 65439 0.027180 0.018139
9629181_13_rc Human enterovirus 71 Picornaviridae 65457 0.027187 0.011826
9626677_18_rc Human enterovirus B Picornaviridae 65456 0.027187 0.011222
13242737_13_rc Enterovirus CA55-1988 Picornaviridae 38701 0.016074 0.015355
138949 Human enterovirus B s=0.277505 p=0.000050
9626677_18_rc Human enterovirus B Picornaviridae 65456 0.027187 0.016792
9626677_22_rc Human enterovirus B Picornaviridae 65455 0.027186 0.015761
9629181_13_rc Human enterovirus 71 Picornaviridae 65457 0.027187 0.014878
9627719_22_rc Human enterovirus A Picornaviridae 65454 0.027186 0.012198
21363125_18_rc Human echovirus 1 Picornaviridae 65439 0.027180 0.011525
Family: Adenoviridae
129951 Human adenovirus C s=0.001297 p=0.802576
9626187_754_rc Human adenovirus type 5 Adenoviridae 1679 0.000697 0.024908
9626187_759_rc Human adenovirus type 5 Adenoviridae 368 0.000153 0.016229
9626158_754 Human adenovirus C Adenoviridae 84 0.000035 0.024229
9626621_773_rc Human adenovirus A Adenoviridae 751 0.000312 0.001803
9626187_866 Human adenovirus type 5 Adenoviridae 50 0.000021 0.023147
129875 Human adenovirus A s=0.001287 p=0.748541
9626621_773_rc Human adenovirus A Adenoviridae 751 0.000312 0.035926
9626621_745_rc Human adenovirus A Adenoviridae 463 0.000192 0.031120
9626187_754_rc Human adenovirus type 5 Adenoviridae 1679 0.000697 0.008387
9626621_749_rc Human adenovirus A Adenoviridae 330 0.000137 0.034897
9626621_749 Human adenovirus A Adenoviridae 36 0.000015 0.034897
Family: Herpesviridae
10331 Equine herpesvirus 4 s=0.000476 p=0.917435
9629732_5440 Equid herpesvirus 4 Herpesviridae 367 0.000152 0.046151
9629732_5441 Equid herpesvirus 4 Herpesviridae 124 0.000052 0.046151
9629732_2382 Equid herpesvirus 4 Herpesviridae 19 0.000008 0.035179
9629732_3507_rc Equid herpesvirus 4 Herpesviridae 17 0.000007 0.036746
9629732_3347_rc Equid herpesvirus 4 Herpesviridae 19 0.000008 0.029028
Family: Papillomaviridae
10560 Bovine papillomavirus type 2 s=0.000348 p=0.862367
9627045_228_rc Bovine papillomavirus type 2 Papillomaviridae 141 0.000059 0.060838
9627045_247_rc Bovine papillomavirus type 2 Papillomaviridae 131 0.000054 0.056854
9627045_170_rc Bovine papillomavirus type 2 Papillomaviridae 63 0.000026 0.072390
9627065_95_rc Deer papillomavirus Papillomaviridae 300 0.000125 0.011884
9627045_247 Bovine papillomavirus type 2 Papillomaviridae 18 0.000007 0.056854
Family: Baculoviridae
271108 Bombyx mori nucleopolyhedrovirus s=0.000214 p=0.954243
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 802 0.000333 0.004609
9630816_4373_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 14 0.000006 0.041070
9630816_1797 Bombyx mori nucleopolyhedrovirus Baculoviridae 14 0.000006 0.034526
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 157 0.000065 0.002800
9630816_1516_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 14 0.000006 0.029536
10449 Lymantria dispar nucleopolyhedrovirus s=0.000208 p=0.966643
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 802 0.000333 0.003458
9629732_5440 Equid herpesvirus 4 Herpesviridae 367 0.000152 0.003989
9630966_2622_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 17 0.000007 0.052547
9630966_1120_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 18 0.000007 0.045945
9630966_2622 Lymantria dispar nucleopolyhedroviru Baculoviridae 15 0.000006 0.052547
Iteration: 2
Family: Picornaviridae
138948 Human enterovirus A s=0.255081 p=0.000073
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65454 0.250108 0.015822
9627719_14_rc Human enterovirus A Picornaviridae 44153 0.168714 0.020675
21363125_2 Human echovirus 1 Picornaviridae 10821 0.041348 0.003755
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 2775 0.010604 0.006808
9627719_12_rc Human enterovirus A Picornaviridae 143 0.000546 0.016143
123738 Enterovirus Yanbian 96-83csf s=0.151502 p=0.000703
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65454 0.250108 0.007980
9627719_14_rc Human enterovirus A Picornaviridae 44153 0.168714 0.010612
21363125_2 Human echovirus 1 Picornaviridae 10821 0.041348 0.011270
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 2775 0.010604 0.012188
9632987_14_rc Human coxsackievirus B2 Picornaviridae 512 0.001956 0.012676
138949 Human enterovirus B s=0.141419 p=0.000538
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65454 0.250108 0.008336
9627719_14_rc Human enterovirus A Picornaviridae 44153 0.168714 0.010284
21363125_2 Human echovirus 1 Picornaviridae 10821 0.041348 0.005556
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 2775 0.010604 0.005139
9632295_13_rc Human coxsackievirus B6 Picornaviridae 408 0.001559 0.011756
46633 Human echovirus 1 s=0.134780 p=0.001053
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65454 0.250108 0.007974
9627719_14_rc Human enterovirus A Picornaviridae 44153 0.168714 0.007800
21363125_2 Human echovirus 1 Picornaviridae 10821 0.041348 0.016623
9632987_14_rc Human coxsackievirus B2 Picornaviridae 512 0.001956 0.011800
9629458_14_rc Human echovirus 12 Picornaviridae 248 0.000948 0.009697
147711 Human rhinovirus A s=0.036123 p=0.132070
9627730_13_rc Human rhinovirus A Picornaviridae 14081 0.053805 0.021650
9627730_83_rc Human rhinovirus A Picornaviridae 493 0.001884 0.018605
9627730_16_rc Human rhinovirus A Picornaviridae 239 0.000913 0.018468
9627730_25_rc Human rhinovirus A Picornaviridae 271 0.001036 0.014831
9627730_12_rc Human rhinovirus A Picornaviridae 91 0.000348 0.020705
Family: Adenoviridae
129951 Human adenovirus C s=0.005769 p=0.374815
9626187_754_rc Human adenovirus type 5 Adenoviridae 1679 0.006416 0.024908
9626187_759_rc Human adenovirus type 5 Adenoviridae 368 0.001406 0.016229
9626158_754 Human adenovirus C Adenoviridae 84 0.000321 0.024229
9626621_773_rc Human adenovirus A Adenoviridae 751 0.002870 0.001803
9626187_866 Human adenovirus type 5 Adenoviridae 50 0.000191 0.023147
129875 Human adenovirus A s=0.005729 p=0.327812
9626621_773_rc Human adenovirus A Adenoviridae 751 0.002870 0.035926
9626621_745_rc Human adenovirus A Adenoviridae 463 0.001769 0.031120
9626187_754_rc Human adenovirus type 5 Adenoviridae 1679 0.006416 0.008387
9626621_749_rc Human adenovirus A Adenoviridae 330 0.001261 0.034897
9626621_749 Human adenovirus A Adenoviridae 36 0.000138 0.034897
Family: Herpesviridae
10331 Equine herpesvirus 4 s=0.002113 p=0.621407
9629732_5440 Equid herpesvirus 4 Herpesviridae 367 0.001402 0.046151
9629732_5441 Equid herpesvirus 4 Herpesviridae 124 0.000474 0.046151
9629732_2382 Equid herpesvirus 4 Herpesviridae 19 0.000073 0.035179
9629732_3507_rc Equid herpesvirus 4 Herpesviridae 17 0.000065 0.036746
9629732_3347_rc Equid herpesvirus 4 Herpesviridae 19 0.000073 0.029028
Family: Papillomaviridae
10560 Bovine papillomavirus type 2 s=0.001560 p=0.435925
9627045_228_rc Bovine papillomavirus type 2 Papillomaviridae 141 0.000539 0.060838
9627045_247_rc Bovine papillomavirus type 2 Papillomaviridae 131 0.000501 0.056854
9627045_170_rc Bovine papillomavirus type 2 Papillomaviridae 63 0.000243 0.072390
9627065_95_rc Deer papillomavirus Papillomaviridae 300 0.001146 0.011884
9627045_247 Bovine papillomavirus type 2 Papillomaviridae 18 0.000069 0.056854
Family: Baculoviridae
271108 Bombyx mori nucleopolyhedrovirus s=0.000958 p=0.653688
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 802 0.003065 0.004609
9630816_4373_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 14 0.000053 0.041070
9630816_1797 Bombyx mori nucleopolyhedrovirus Baculoviridae 14 0.000053 0.034526
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 157 0.000600 0.002800
22091104_693 Virus PhiCh1 Myoviridae 139 0.000531 0.003039
10449 Lymantria dispar nucleopolyhedrovirus s=0.000938 p=0.756259
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 802 0.003065 0.003458
9629732_5440 Equid herpesvirus 4 Herpesviridae 367 0.001402 0.003989
9630966_2622_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 17 0.000065 0.052547
9630966_1120_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 18 0.000069 0.045945
9630966_2622 Lymantria dispar nucleopolyhedroviru Baculoviridae 15 0.000057 0.052547
GSM40827
EPREDICT : 2007-03-28 14:04:54 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40827
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40827:GSM40827
Iteration: 1
Family: Picornaviridae
147712 Human rhinovirus B s=0.359318 p=0.000014
9626735_14_rc Human rhinovirus B Picornaviridae 65233 0.021234 0.024898
9626735_16_rc Human rhinovirus B Picornaviridae 65442 0.021302 0.023121
9626735_18_rc Human rhinovirus B Picornaviridae 65442 0.021302 0.022396
9626735_8_rc Human rhinovirus B Picornaviridae 65446 0.021303 0.020065
9626735_20_rc Human rhinovirus B Picornaviridae 61820 0.020123 0.021059
123738 Enterovirus Yanbian 96-83csf s=0.287260 p=0.000083
9629181_13_rc Human enterovirus 71 Picornaviridae 65441 0.021301 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 65445 0.021303 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65444 0.021302 0.013331
13242737_13_rc Enterovirus CA55-1988 Picornaviridae 65443 0.021302 0.012986
9626677_22_rc Human enterovirus B Picornaviridae 65447 0.021303 0.012676
138948 Human enterovirus A s=0.268208 p=0.000061
9627719_14_rc Human enterovirus A Picornaviridae 65458 0.021307 0.020675
9627719_22_rc Human enterovirus A Picornaviridae 65440 0.021301 0.015851
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65434 0.021299 0.015822
9626677_18_rc Human enterovirus B Picornaviridae 65444 0.021302 0.011370
9629181_13_rc Human enterovirus 71 Picornaviridae 65441 0.021301 0.010883
46633 Human echovirus 1 s=0.264801 p=0.000116
21363125_21_rc Human echovirus 1 Picornaviridae 65444 0.021302 0.018603
21363125_18_rc Human echovirus 1 Picornaviridae 65445 0.021303 0.018139
13242737_13_rc Enterovirus CA55-1988 Picornaviridae 65443 0.021302 0.015355
21363125_23_rc Human echovirus 1 Picornaviridae 58242 0.018958 0.014342
9629181_13_rc Human enterovirus 71 Picornaviridae 65441 0.021301 0.011826
138949 Human enterovirus B s=0.257638 p=0.000066
9626677_18_rc Human enterovirus B Picornaviridae 65444 0.021302 0.016792
9626677_22_rc Human enterovirus B Picornaviridae 65447 0.021303 0.015761
9629181_13_rc Human enterovirus 71 Picornaviridae 65441 0.021301 0.014878
9627719_22_rc Human enterovirus A Picornaviridae 65440 0.021301 0.012198
21363125_18_rc Human echovirus 1 Picornaviridae 65445 0.021303 0.011525
Family: Siphoviridae
28369 Mycobacteriophage D29 s=0.001407 p=0.438073
9625433_791 Mycobacterium phage L5 Siphoviridae 2540 0.000827 0.028567
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 1644 0.000535 0.021080
9630386_399_rc Mycobacteriophage D29 Siphoviridae 16 0.000005 0.049645
9630386_325_rc Mycobacteriophage D29 Siphoviridae 16 0.000005 0.048573
9630386_514_rc Mycobacteriophage D29 Siphoviridae 14 0.000005 0.048491
Family: Adenoviridae
129951 Human adenovirus C s=0.001162 p=0.825626
9626187_754_rc Human adenovirus type 5 Adenoviridae 535 0.000174 0.024908
9626187_859 Human adenovirus type 5 Adenoviridae 477 0.000155 0.022130
9626187_759_rc Human adenovirus type 5 Adenoviridae 634 0.000206 0.016229
9626621_711_rc Human adenovirus A Adenoviridae 605 0.000197 0.009534
9626187_754 Human adenovirus type 5 Adenoviridae 86 0.000028 0.024908
129875 Human adenovirus A s=0.001140 p=0.776535
9626621_711_rc Human adenovirus A Adenoviridae 605 0.000197 0.044936
9626621_745_rc Human adenovirus A Adenoviridae 311 0.000101 0.031120
9626621_749_rc Human adenovirus A Adenoviridae 224 0.000073 0.034897
9626187_754_rc Human adenovirus type 5 Adenoviridae 535 0.000174 0.008387
9626621_715_rc Human adenovirus A Adenoviridae 105 0.000034 0.040489
Family: Baculoviridae
10468 Helicoverpa zea single nucleocapsid nucl s=0.001095 p=0.357865
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 1776 0.000578 0.032120
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 187 0.000061 0.022542
18138257_706_rc Helicoverpa zea single nucleocapsid Baculoviridae 91 0.000030 0.031332
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 156 0.000051 0.004406
15426271_707_rc Helicoverpa armigera nuclear polyhed Baculoviridae 24 0.000008 0.026705
51313 Helicoverpa armigera nuclear polyhedrosi s=0.001080 p=0.346058
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 1776 0.000578 0.032937
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 187 0.000061 0.023116
18138257_706_rc Helicoverpa zea single nucleocapsid Baculoviridae 91 0.000030 0.026700
15426271_707_rc Helicoverpa armigera nuclear polyhed Baculoviridae 24 0.000008 0.030823
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 156 0.000051 0.004518
148363 Helicoverpa armigera nucleopolyhedroviru s=0.001080 p=0.346816
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 1776 0.000578 0.032918
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 187 0.000061 0.023102
18138257_706_rc Helicoverpa zea single nucleocapsid Baculoviridae 91 0.000030 0.026684
15426271_707_rc Helicoverpa armigera nuclear polyhed Baculoviridae 24 0.000008 0.030805
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 156 0.000051 0.004515
Family: Tymoviridae
12154 Turnip yellow mosaic virus s=0.000863 p=0.760977
21686950_199_rc Turnip yellow mosaic virus Tymoviridae 820 0.000267 0.077314
21686950_193_rc Turnip yellow mosaic virus Tymoviridae 82 0.000027 0.073992
9629255_191_rc Oat blue dwarf virus Tymoviridae 182 0.000059 0.012082
9629255_197_rc Oat blue dwarf virus Tymoviridae 130 0.000042 0.014415
21686950_186 Turnip yellow mosaic virus Tymoviridae 26 0.000008 0.070486
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.000664 p=0.745353
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 480 0.000156 0.052060
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 263 0.000086 0.064086
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 104 0.000034 0.051960
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 49 0.000016 0.055619
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 45 0.000015 0.041460
Iteration: 2
Family: Picornaviridae
138948 Human enterovirus A s=0.209229 p=0.000148
9627719_14_rc Human enterovirus A Picornaviridae 65458 0.125149 0.020675
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65434 0.125103 0.015822
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 14110 0.026977 0.006808
9632295_13_rc Human coxsackievirus B6 Picornaviridae 9907 0.018941 0.005219
21363125_2 Human echovirus 1 Picornaviridae 3699 0.007072 0.003755
123738 Enterovirus Yanbian 96-83csf s=0.133356 p=0.001038
9627719_14_rc Human enterovirus A Picornaviridae 65458 0.125149 0.010612
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65434 0.125103 0.007980
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 14110 0.026977 0.012188
9632295_13_rc Human coxsackievirus B6 Picornaviridae 9907 0.018941 0.011125
21363125_2 Human echovirus 1 Picornaviridae 3699 0.007072 0.011270
138949 Human enterovirus B s=0.124250 p=0.000815
9627719_14_rc Human enterovirus A Picornaviridae 65458 0.125149 0.010284
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65434 0.125103 0.008336
9632295_13_rc Human coxsackievirus B6 Picornaviridae 9907 0.018941 0.011756
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 14110 0.026977 0.005139
21363125_2 Human echovirus 1 Picornaviridae 3699 0.007072 0.005556
147711 Human rhinovirus A s=0.107219 p=0.028837
9627730_13_rc Human rhinovirus A Picornaviridae 60777 0.116199 0.021650
9627730_25_rc Human rhinovirus A Picornaviridae 4118 0.007873 0.014831
9627730_2_rc Human rhinovirus A Picornaviridae 2932 0.005606 0.017563
9627730_83_rc Human rhinovirus A Picornaviridae 2663 0.005091 0.018605
9627730_3_rc Human rhinovirus A Picornaviridae 3121 0.005967 0.015446
46633 Human echovirus 1 s=0.099846 p=0.002513
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65434 0.125103 0.007974
9627719_14_rc Human enterovirus A Picornaviridae 65458 0.125149 0.007800
21363125_2 Human echovirus 1 Picornaviridae 3699 0.007072 0.016623
9632295_13_rc Human coxsackievirus B6 Picornaviridae 9907 0.018941 0.005568
9632987_14_rc Human coxsackievirus B2 Picornaviridae 1806 0.003453 0.011800
Family: Siphoviridae
28369 Mycobacteriophage D29 s=0.004510 p=0.103470
9625433_791 Mycobacterium phage L5 Siphoviridae 2540 0.004856 0.028567
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 1644 0.003143 0.021080
9630386_399_rc Mycobacteriophage D29 Siphoviridae 16 0.000031 0.049645
9630386_325_rc Mycobacteriophage D29 Siphoviridae 16 0.000031 0.048573
22091104_693 Virus PhiCh1 Myoviridae 212 0.000405 0.003287
Family: Adenoviridae
129951 Human adenovirus C s=0.003730 p=0.509072
9626187_754_rc Human adenovirus type 5 Adenoviridae 535 0.001023 0.024908
9626187_859 Human adenovirus type 5 Adenoviridae 477 0.000912 0.022130
9626187_759_rc Human adenovirus type 5 Adenoviridae 634 0.001212 0.016229
9626621_711_rc Human adenovirus A Adenoviridae 605 0.001157 0.009534
9626187_754 Human adenovirus type 5 Adenoviridae 86 0.000164 0.024908
129875 Human adenovirus A s=0.003658 p=0.455923
9626621_711_rc Human adenovirus A Adenoviridae 605 0.001157 0.044936
9626621_745_rc Human adenovirus A Adenoviridae 311 0.000595 0.031120
9626621_749_rc Human adenovirus A Adenoviridae 224 0.000428 0.034897
9626187_754_rc Human adenovirus type 5 Adenoviridae 535 0.001023 0.008387
9626621_715_rc Human adenovirus A Adenoviridae 105 0.000201 0.040489
Family: Baculoviridae
10468 Helicoverpa zea single nucleocapsid nucl s=0.003496 p=0.056385
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 1776 0.003396 0.032120
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 187 0.000358 0.022542
18138257_706_rc Helicoverpa zea single nucleocapsid Baculoviridae 91 0.000174 0.031332
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 156 0.000298 0.004406
15426271_707_rc Helicoverpa armigera nuclear polyhed Baculoviridae 24 0.000046 0.026705
51313 Helicoverpa armigera nuclear polyhedrosi s=0.003447 p=0.053306
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 1776 0.003396 0.032937
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 187 0.000358 0.023116
18138257_706_rc Helicoverpa zea single nucleocapsid Baculoviridae 91 0.000174 0.026700
15426271_707_rc Helicoverpa armigera nuclear polyhed Baculoviridae 24 0.000046 0.030823
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 156 0.000298 0.004518
148363 Helicoverpa armigera nucleopolyhedroviru s=0.003447 p=0.053502
12597485_1458_rc Helicoverpa armigera nucleopolyhedro Baculoviridae 1776 0.003396 0.032918
15426271_1815_rc Helicoverpa armigera nuclear polyhed Baculoviridae 187 0.000358 0.023102
18138257_706_rc Helicoverpa zea single nucleocapsid Baculoviridae 91 0.000174 0.026684
15426271_707_rc Helicoverpa armigera nuclear polyhed Baculoviridae 24 0.000046 0.030805
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 156 0.000298 0.004515
Family: Tymoviridae
12154 Turnip yellow mosaic virus s=0.002764 p=0.436380
21686950_199_rc Turnip yellow mosaic virus Tymoviridae 820 0.001568 0.077314
21686950_193_rc Turnip yellow mosaic virus Tymoviridae 82 0.000157 0.073992
9629255_191_rc Oat blue dwarf virus Tymoviridae 182 0.000348 0.012082
9629255_197_rc Oat blue dwarf virus Tymoviridae 130 0.000249 0.014415
21686950_186 Turnip yellow mosaic virus Tymoviridae 26 0.000050 0.070486
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.002119 p=0.338466
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 480 0.000918 0.052060
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 263 0.000503 0.064086
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 104 0.000199 0.051960
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 49 0.000094 0.055619
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 45 0.000086 0.041460
GSM40828
EPREDICT : 2007-03-28 14:06:53 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40828
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40828:GSM40828
Iteration: 1
Family: Paramyxoviridae
12814 Respiratory syncytial virus s=0.570107 p=0.000000
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 65341 0.035756 0.050854
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 65418 0.035798 0.047021
9629367_111 Respiratory syncytial virus Paramyxoviridae 65397 0.035786 0.044362
9629367_519_rc Respiratory syncytial virus Paramyxoviridae 65263 0.035713 0.039895
9629367_435_rc Respiratory syncytial virus Paramyxoviridae 65314 0.035741 0.038053
11250 Human respiratory syncytial virus s=0.462738 p=0.000001
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 65417 0.035797 0.055394
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 65336 0.035753 0.053916
9629198_522_rc Human respiratory syncytial virus Paramyxoviridae 65341 0.035756 0.050364
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 65341 0.035756 0.037270
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 33438 0.018298 0.065924
11246 Bovine respiratory syncytial virus s=0.350354 p=0.000000
9631267_463 Bovine respiratory syncytial virus Paramyxoviridae 65408 0.035792 0.049394
9631267_63_rc Bovine respiratory syncytial virus Paramyxoviridae 65212 0.035685 0.048894
9631267_130_rc Bovine respiratory syncytial virus Paramyxoviridae 49871 0.027290 0.048894
9631267_429_rc Bovine respiratory syncytial virus Paramyxoviridae 49072 0.026853 0.045946
9631267_504_rc Bovine respiratory syncytial virus Paramyxoviridae 38496 0.021066 0.041789
162145 Turkey rhinotracheitis virus s=0.154904 p=0.000113
22780169_354_rc Human metapneumovirus Paramyxoviridae 65381 0.035778 0.057362
22780169_372_rc Human metapneumovirus Paramyxoviridae 65371 0.035772 0.055561
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 65336 0.035753 0.008364
22780169_370_rc Human metapneumovirus Paramyxoviridae 10675 0.005842 0.050217
22780169_331 Human metapneumovirus Paramyxoviridae 8690 0.004755 0.059561
Family: Adenoviridae
130308 Human adenovirus E s=0.006703 p=0.226528
17227341_743 Human adenovirus E Adenoviridae 2506 0.001371 0.028943
9626553_717_rc Human adenovirus F Adenoviridae 1349 0.000738 0.017795
9632407_785_rc Human adenovirus D Adenoviridae 1038 0.000568 0.014437
9632275_837_rc Porcine adenovirus A Adenoviridae 1371 0.000750 0.008195
21407997_741 Human adenovirus B Adenoviridae 665 0.000364 0.014833
47680 Tree shrew adenovirus s=0.006340 p=0.307301
17227341_743 Human adenovirus E Adenoviridae 2506 0.001371 0.030416
9632275_837_rc Porcine adenovirus A Adenoviridae 1371 0.000750 0.014974
9626553_717_rc Human adenovirus F Adenoviridae 1349 0.000738 0.014904
9632275_270 Porcine adenovirus A Adenoviridae 620 0.000339 0.027688
9632407_712_rc Human adenovirus D Adenoviridae 564 0.000309 0.017222
130369 Porcine adenovirus A s=0.005997 p=0.342752
9632275_837_rc Porcine adenovirus A Adenoviridae 1371 0.000750 0.035255
9632275_270 Porcine adenovirus A Adenoviridae 620 0.000339 0.036944
17227341_743 Human adenovirus E Adenoviridae 2506 0.001371 0.008918
9632407_785_rc Human adenovirus D Adenoviridae 1038 0.000568 0.019597
9632275_868 Porcine adenovirus A Adenoviridae 495 0.000271 0.033084
130309 Human adenovirus F s=0.005985 p=0.225483
17227341_743 Human adenovirus E Adenoviridae 2506 0.001371 0.021295
9626553_717_rc Human adenovirus F Adenoviridae 1349 0.000738 0.033578
9626553_810_rc Human adenovirus F Adenoviridae 574 0.000314 0.031338
9632407_712_rc Human adenovirus D Adenoviridae 564 0.000309 0.020159
9626553_711_rc Human adenovirus F Adenoviridae 293 0.000160 0.028761
130310 Human adenovirus D s=0.005802 p=0.301679
9632407_785_rc Human adenovirus D Adenoviridae 1038 0.000568 0.022517
17227341_743 Human adenovirus E Adenoviridae 2506 0.001371 0.008881
9632275_837_rc Porcine adenovirus A Adenoviridae 1371 0.000750 0.010494
9632407_712_rc Human adenovirus D Adenoviridae 564 0.000309 0.024150
9626553_717_rc Human adenovirus F Adenoviridae 1349 0.000738 0.009573
Family: Polyomaviridae
10633 Simian virus 40 s=0.005364 p=0.304506
9628421_25 Simian virus 40 Polyomaviridae 1572 0.000860 0.088121
9628421_23 Simian virus 40 Polyomaviridae 1066 0.000583 0.082917
9628642_23 JC virus Polyomaviridae 1671 0.000914 0.032633
9628421_25_rc Simian virus 40 Polyomaviridae 337 0.000184 0.088121
9628642_23_rc JC virus Polyomaviridae 315 0.000172 0.032633
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.004976 p=0.600181
HCMVUL104_160 Human herpesvirus 5 Herpesviridae 1201 0.000657 0.005226
HCMVUL24_94 Human herpesvirus 5 Herpesviridae 974 0.000533 0.006163
HCMVIRL9_203 Human herpesvirus 5 Herpesviridae 993 0.000543 0.005155
HCMVUL33_155 Human herpesvirus 5 Herpesviridae 1216 0.000665 0.003911
HCMVUL106_103 Human herpesvirus 5 Herpesviridae 716 0.000392 0.005520
Family: Retroviridae
11958 Avian carcinoma virus s=0.004743 p=0.339525
9626196_8 Rous sarcoma virus Retroviridae 1519 0.000831 0.022448
9626152_17 Avian carcinoma virus Retroviridae 679 0.000372 0.024113
9626156_9 Avian sarcoma virus Y73 Retroviridae 664 0.000363 0.021714
9626154_9 Fujinami sarcoma virus Retroviridae 612 0.000335 0.022448
9627732_9 Avian sarcoma virus Retroviridae 1312 0.000718 0.008900
Family: Papillomaviridae
37957 Human papillomavirus type 36 s=0.004374 p=0.370372
9628510_178 Human papillomavirus type 36 Papillomaviridae 921 0.000504 0.026257
9627145_110_rc Human papillomavirus type 5 Papillomaviridae 1117 0.000611 0.018227
9628510_178_rc Human papillomavirus type 36 Papillomaviridae 698 0.000382 0.026257
9628510_108 Human papillomavirus type 36 Papillomaviridae 324 0.000177 0.028027
9628510_159 Human papillomavirus type 36 Papillomaviridae 292 0.000160 0.028720
Iteration: 2
Family: Adenoviridae
130308 Human adenovirus E s=0.019050 p=0.048490
17227341_743 Human adenovirus E Adenoviridae 2506 0.003462 0.028943
9626553_717_rc Human adenovirus F Adenoviridae 1349 0.001864 0.017795
9632407_785_rc Human adenovirus D Adenoviridae 1038 0.001434 0.014437
9632275_837_rc Porcine adenovirus A Adenoviridae 1371 0.001894 0.008195
21407997_741 Human adenovirus B Adenoviridae 665 0.000919 0.014833
47680 Tree shrew adenovirus s=0.018021 p=0.094810
17227341_743 Human adenovirus E Adenoviridae 2506 0.003462 0.030416
9632275_837_rc Porcine adenovirus A Adenoviridae 1371 0.001894 0.014974
9626553_717_rc Human adenovirus F Adenoviridae 1349 0.001864 0.014904
9632275_270 Porcine adenovirus A Adenoviridae 620 0.000857 0.027688
9632407_712_rc Human adenovirus D Adenoviridae 564 0.000779 0.017222
130369 Porcine adenovirus A s=0.017047 p=0.114674
9632275_837_rc Porcine adenovirus A Adenoviridae 1371 0.001894 0.035255
9632275_270 Porcine adenovirus A Adenoviridae 620 0.000857 0.036944
17227341_743 Human adenovirus E Adenoviridae 2506 0.003462 0.008918
9632407_785_rc Human adenovirus D Adenoviridae 1038 0.001434 0.019597
9632275_868 Porcine adenovirus A Adenoviridae 495 0.000684 0.033084
130309 Human adenovirus F s=0.017008 p=0.044481
17227341_743 Human adenovirus E Adenoviridae 2506 0.003462 0.021295
9626553_717_rc Human adenovirus F Adenoviridae 1349 0.001864 0.033578
9626553_810_rc Human adenovirus F Adenoviridae 574 0.000793 0.031338
9632407_712_rc Human adenovirus D Adenoviridae 564 0.000779 0.020159
9626553_711_rc Human adenovirus F Adenoviridae 293 0.000405 0.028761
130310 Human adenovirus D s=0.016485 p=0.077423
9632407_785_rc Human adenovirus D Adenoviridae 1038 0.001434 0.022517
17227341_743 Human adenovirus E Adenoviridae 2506 0.003462 0.008881
9632275_837_rc Porcine adenovirus A Adenoviridae 1371 0.001894 0.010494
9632407_712_rc Human adenovirus D Adenoviridae 564 0.000779 0.024150
9626553_717_rc Human adenovirus F Adenoviridae 1349 0.001864 0.009573
Family: Polyomaviridae
10633 Simian virus 40 s=0.015253 p=0.115517
9628421_25 Simian virus 40 Polyomaviridae 1572 0.002172 0.088121
9628421_23 Simian virus 40 Polyomaviridae 1066 0.001473 0.082917
9628642_23 JC virus Polyomaviridae 1671 0.002309 0.032633
9628421_25_rc Simian virus 40 Polyomaviridae 337 0.000466 0.088121
9628642_23_rc JC virus Polyomaviridae 315 0.000435 0.032633
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.014142 p=0.294018
HCMVUL104_160 Human herpesvirus 5 Herpesviridae 1201 0.001659 0.005226
HCMVUL24_94 Human herpesvirus 5 Herpesviridae 974 0.001346 0.006163
HCMVIRL9_203 Human herpesvirus 5 Herpesviridae 993 0.001372 0.005155
HCMVUL33_155 Human herpesvirus 5 Herpesviridae 1216 0.001680 0.003911
HCMVUL106_103 Human herpesvirus 5 Herpesviridae 716 0.000989 0.005520
Family: Retroviridae
11958 Avian carcinoma virus s=0.013466 p=0.117026
9626196_8 Rous sarcoma virus Retroviridae 1519 0.002099 0.022448
9626152_17 Avian carcinoma virus Retroviridae 679 0.000938 0.024113
9626156_9 Avian sarcoma virus Y73 Retroviridae 664 0.000917 0.021714
9626154_9 Fujinami sarcoma virus Retroviridae 612 0.000846 0.022448
9627732_9 Avian sarcoma virus Retroviridae 1312 0.001813 0.008900
Family: Papillomaviridae
37957 Human papillomavirus type 36 s=0.012426 p=0.121268
9628510_178 Human papillomavirus type 36 Papillomaviridae 921 0.001272 0.026257
9627145_110_rc Human papillomavirus type 5 Papillomaviridae 1117 0.001543 0.018227
9628510_178_rc Human papillomavirus type 36 Papillomaviridae 698 0.000964 0.026257
9628510_108 Human papillomavirus type 36 Papillomaviridae 324 0.000448 0.028027
9628510_159 Human papillomavirus type 36 Papillomaviridae 292 0.000403 0.028720
10578 Human papillomavirus type 5 s=0.011857 p=0.110453
9627145_110_rc Human papillomavirus type 5 Papillomaviridae 1117 0.001543 0.026479
9628510_178 Human papillomavirus type 36 Papillomaviridae 921 0.001272 0.013489
9627145_179 Human papillomavirus type 5 Papillomaviridae 418 0.000578 0.023897
9628510_178_rc Human papillomavirus type 36 Papillomaviridae 698 0.000964 0.013489
9627136_110 Human papillomavirus type 47 Papillomaviridae 361 0.000499 0.023358
10599 Human papillomavirus type 5b s=0.011229 p=0.088271
9627145_110_rc Human papillomavirus type 5 Papillomaviridae 1117 0.001543 0.027579
9626498_177 Human papillomavirus type 5b Papillomaviridae 422 0.000583 0.028561
9628510_178 Human papillomavirus type 36 Papillomaviridae 921 0.001272 0.012006
9627136_110 Human papillomavirus type 47 Papillomaviridae 361 0.000499 0.024328
9628510_178_rc Human papillomavirus type 36 Papillomaviridae 698 0.000964 0.012006
10594 Human papillomavirus type 47 s=0.010274 p=0.115099
9627145_110_rc Human papillomavirus type 5 Papillomaviridae 1117 0.001543 0.026574
9628510_178 Human papillomavirus type 36 Papillomaviridae 921 0.001272 0.023555
9628510_178_rc Human papillomavirus type 36 Papillomaviridae 698 0.000964 0.023555
9627136_110 Human papillomavirus type 47 Papillomaviridae 361 0.000499 0.033543
9627136_178 Human papillomavirus type 47 Papillomaviridae 253 0.000350 0.031005
10579 Human papillomavirus type 8 s=0.010235 p=0.146904
9627145_110_rc Human papillomavirus type 5 Papillomaviridae 1117 0.001543 0.020883
9628510_178 Human papillomavirus type 36 Papillomaviridae 921 0.001272 0.009954
9627145_179 Human papillomavirus type 5 Papillomaviridae 418 0.000578 0.017236
9628510_178_rc Human papillomavirus type 36 Papillomaviridae 698 0.000964 0.009954
9627136_110 Human papillomavirus type 47 Papillomaviridae 361 0.000499 0.018177
Family: Flexiviridae
112227 Cactus virus X s=0.009560 p=0.076485
14602399_121 Cactus virus X Flexiviridae 1423 0.001966 0.089780
14602399_167 Cactus virus X Flexiviridae 599 0.000828 0.084562
14602399_173 Cactus virus X Flexiviridae 418 0.000577 0.097146
14602399_173_rc Cactus virus X Flexiviridae 87 0.000120 0.097146
14602399_157 Cactus virus X Flexiviridae 57 0.000079 0.084251
GSM40829
EPREDICT : 2007-03-28 14:12:25 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40829
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40829:GSM40829
Iteration: 1
Family: Orthomyxoviridae
11320 Influenza A virus s=0.450633 p=0.000000
8486129_56 Influenza A virus Orthomyxoviridae 65440 0.049045 0.073726
8486129_20_rc Influenza A virus Orthomyxoviridae 65451 0.049053 0.073178
8486129_38 Influenza A virus Orthomyxoviridae 65422 0.049032 0.066505
8486125_53 Influenza A virus Orthomyxoviridae 65443 0.049047 0.036078
8486129_29 Influenza A virus Orthomyxoviridae 33045 0.024766 0.061521
183764 Influenza A virus s=0.444157 p=0.000000
8486129_56 Influenza A virus Orthomyxoviridae 65440 0.049045 0.075679
8486129_38 Influenza A virus Orthomyxoviridae 65422 0.049032 0.068267
8486129_20_rc Influenza A virus Orthomyxoviridae 65451 0.049053 0.061872
8486125_53 Influenza A virus Orthomyxoviridae 65443 0.049047 0.037033
8486129_29 Influenza A virus Orthomyxoviridae 33045 0.024766 0.063151
130760 Influenza A virus s=0.401061 p=0.000002
8486129_56 Influenza A virus Orthomyxoviridae 65440 0.049045 0.207068
8486129_59 Influenza A virus Orthomyxoviridae 65446 0.049050 0.161429
8486129_29 Influenza A virus Orthomyxoviridae 33045 0.024766 0.060575
8486129_29_rc Influenza A virus Orthomyxoviridae 30210 0.022641 0.060575
8486129_59_rc Influenza A virus Orthomyxoviridae 2391 0.001792 0.161429
Family: Tymoviridae
12158 Kennedya yellow mosaic virus s=0.034591 p=0.035511
9629156_135_rc Kennedya yellow mosaic virus Tymoviridae 19587 0.014680 0.075299
9629156_202_rc Kennedya yellow mosaic virus Tymoviridae 143 0.000107 0.091112
9629156_204_rc Kennedya yellow mosaic virus Tymoviridae 87 0.000065 0.069210
9629156_202 Kennedya yellow mosaic virus Tymoviridae 60 0.000045 0.091112
9629255_197_rc Oat blue dwarf virus Tymoviridae 176 0.000132 0.022362
Family: Retroviridae
33748 Primate T-lymphotropic virus 2 s=0.014940 p=0.177485
9629498_292_rc Simian T-lymphotropic virus 2 Retroviridae 3034 0.002274 0.065223
9629498_118 Simian T-lymphotropic virus 2 Retroviridae 3560 0.002668 0.054274
9629498_118_rc Simian T-lymphotropic virus 2 Retroviridae 919 0.000689 0.054274
9629498_292 Simian T-lymphotropic virus 2 Retroviridae 268 0.000201 0.065223
9629498_113_rc Simian T-lymphotropic virus 2 Retroviridae 328 0.000246 0.046063
Family: Podoviridae
55884 Shigella flexneri bacteriophage V s=0.013573 p=0.006780
19548987_891 Shigella flexneri bacteriophage V Podoviridae 4582 0.003434 0.091382
19548987_891_rc Shigella flexneri bacteriophage V Podoviridae 2970 0.002226 0.091382
19548987_1431_rc Shigella flexneri bacteriophage V Podoviridae 243 0.000182 0.096115
19548987_1433_rc Shigella flexneri bacteriophage V Podoviridae 91 0.000068 0.101696
19548987_1440 Shigella flexneri bacteriophage V Podoviridae 39 0.000029 0.093646
Family: NA
12475 Hepatitis delta virus s=0.009544 p=0.233382
13277517_1511_P70 Hepatitis delta virus Deltavirus 5381 0.004033 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 724 0.000543 0.051914
13277517_43_rc Hepatitis delta virus Deltavirus 246 0.000184 0.067138
13277517_51 Hepatitis delta virus Deltavirus 272 0.000204 0.054173
13277517_1436_P70_rc Hepatitis delta virus Deltavirus 301 0.000226 0.043700
Family: Papillomaviridae
37116 Human papillomavirus type 61 s=0.008718 p=0.137753
9628574_230 Human papillomavirus type 61 Papillomaviridae 2605 0.001952 0.037262
13128941_226 Human papillomavirus type 84 Papillomaviridae 975 0.000731 0.022221
22138114_230 Human papillomavirus type 89 Papillomaviridae 713 0.000534 0.026997
15789195_226 Human papillomavirus type 86 Papillomaviridae 698 0.000523 0.022905
14485273_230 Human papillomavirus type 87 Papillomaviridae 330 0.000247 0.021342
Iteration: 2
Family: Tymoviridae
12158 Kennedya yellow mosaic virus s=0.053610 p=0.017326
9629156_135_rc Kennedya yellow mosaic virus Tymoviridae 19587 0.019703 0.075299
9629156_202_rc Kennedya yellow mosaic virus Tymoviridae 143 0.000144 0.091112
9629156_204_rc Kennedya yellow mosaic virus Tymoviridae 87 0.000088 0.069210
9629156_202 Kennedya yellow mosaic virus Tymoviridae 60 0.000060 0.091112
9629255_197_rc Oat blue dwarf virus Tymoviridae 176 0.000177 0.022362
Family: Retroviridae
33748 Primate T-lymphotropic virus 2 s=0.023158 p=0.107711
9629498_292_rc Simian T-lymphotropic virus 2 Retroviridae 3034 0.003052 0.065223
9629498_118 Simian T-lymphotropic virus 2 Retroviridae 3560 0.003581 0.054274
9629498_118_rc Simian T-lymphotropic virus 2 Retroviridae 919 0.000924 0.054274
9629498_292 Simian T-lymphotropic virus 2 Retroviridae 268 0.000270 0.065223
9629498_113_rc Simian T-lymphotropic virus 2 Retroviridae 328 0.000330 0.046063
Family: Podoviridae
55884 Shigella flexneri bacteriophage V s=0.021036 p=0.002384
19548987_891 Shigella flexneri bacteriophage V Podoviridae 4582 0.004609 0.091382
19548987_891_rc Shigella flexneri bacteriophage V Podoviridae 2970 0.002988 0.091382
19548987_1431_rc Shigella flexneri bacteriophage V Podoviridae 243 0.000244 0.096115
19548987_1433_rc Shigella flexneri bacteriophage V Podoviridae 91 0.000092 0.101696
19548987_1440 Shigella flexneri bacteriophage V Podoviridae 39 0.000039 0.093646
Family: NA
12475 Hepatitis delta virus s=0.014790 p=0.151715
13277517_1511_P70 Hepatitis delta virus Deltavirus 5381 0.005413 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 724 0.000728 0.051914
13277517_43_rc Hepatitis delta virus Deltavirus 246 0.000247 0.067138
13277517_51 Hepatitis delta virus Deltavirus 272 0.000274 0.054173
13277517_1436_P70_rc Hepatitis delta virus Deltavirus 301 0.000303 0.043700
Family: Orthomyxoviridae
98832 Influenza B virus s=0.014537 p=0.014876
8486154_69_rc Influenza B virus Orthomyxoviridae 4140 0.004165 0.071287
8486154_69 Influenza B virus Orthomyxoviridae 409 0.000411 0.071287
8486154_24 Influenza B virus Orthomyxoviridae 283 0.000285 0.061804
8486154_24_rc Influenza B virus Orthomyxoviridae 272 0.000274 0.061804
8486164_27_rc Influenza B virus Orthomyxoviridae 289 0.000291 0.037652
228675 Influenza B virus s=0.014476 p=0.015578
8486154_69_rc Influenza B virus Orthomyxoviridae 4140 0.004165 0.070531
8486154_69 Influenza B virus Orthomyxoviridae 409 0.000411 0.070531
8486154_24 Influenza B virus Orthomyxoviridae 283 0.000285 0.061148
8486154_24_rc Influenza B virus Orthomyxoviridae 272 0.000274 0.061148
8486164_27_rc Influenza B virus Orthomyxoviridae 289 0.000291 0.037252
Family: Papillomaviridae
37116 Human papillomavirus type 61 s=0.013517 p=0.076919
9628574_230 Human papillomavirus type 61 Papillomaviridae 2605 0.002620 0.037262
13128941_226 Human papillomavirus type 84 Papillomaviridae 975 0.000981 0.022221
22138114_230 Human papillomavirus type 89 Papillomaviridae 713 0.000717 0.026997
15789195_226 Human papillomavirus type 86 Papillomaviridae 698 0.000702 0.022905
14485273_230 Human papillomavirus type 87 Papillomaviridae 330 0.000332 0.021342
GSM40830
EPREDICT : 2007-03-28 14:17:50 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40830
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40830:GSM40830
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.310350 p=0.003888
9627730_12_rc Human rhinovirus A Picornaviridae 65463 0.017859 0.020705
9627730_13_rc Human rhinovirus A Picornaviridae 61151 0.016683 0.021650
9627730_19_rc Human rhinovirus A Picornaviridae 65371 0.017834 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65459 0.017858 0.018468
9627730_22_rc Human rhinovirus A Picornaviridae 64903 0.017706 0.016616
12090 Human enterovirus D s=0.190361 p=0.000134
9626436_18_rc Human enterovirus 70 Picornaviridae 59973 0.016361 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 50333 0.013732 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 63164 0.017232 0.018469
12408699_21_rc Poliovirus Picornaviridae 47498 0.012958 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 52607 0.014352 0.014212
123738 Enterovirus Yanbian 96-83csf s=0.188185 p=0.000352
9627719_18_rc Human enterovirus A Picornaviridae 64860 0.017695 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 59983 0.016364 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 59800 0.016314 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 61479 0.016772 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 57613 0.015718 0.012615
138953 Poliovirus s=0.171209 p=0.000129
12408699_18_rc Poliovirus Picornaviridae 65457 0.017858 0.028609
12408699_21_rc Poliovirus Picornaviridae 47498 0.012958 0.030078
9626433_17_rc Human enterovirus C Picornaviridae 63164 0.017232 0.017603
9626436_21_rc Human enterovirus 70 Picornaviridae 50333 0.013732 0.013701
9626436_18_rc Human enterovirus 70 Picornaviridae 59973 0.016361 0.010854
147712 Human rhinovirus B s=0.167983 p=0.000239
9626735_14_rc Human rhinovirus B Picornaviridae 65451 0.017856 0.024898
9626735_18_rc Human rhinovirus B Picornaviridae 63561 0.017340 0.022396
9626735_22_rc Human rhinovirus B Picornaviridae 65443 0.017854 0.019391
9626735_257 Human rhinovirus B Picornaviridae 54149 0.014773 0.019989
9626735_8_rc Human rhinovirus B Picornaviridae 25011 0.006823 0.020065
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.006527 p=0.072092
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 8779 0.002395 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 1694 0.000462 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 903 0.000246 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 536 0.000146 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 317 0.000086 0.055619
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.000680 p=0.928434
EBV_5024_rc Human herpesvirus 4 Herpesviridae 508 0.000139 0.013853
EBV_4323_rc Human herpesvirus 4 Herpesviridae 425 0.000116 0.016287
EBV_4540_rc Human herpesvirus 4 Herpesviridae 421 0.000115 0.014954
EBV_3139_rc Human herpesvirus 4 Herpesviridae 124 0.000034 0.016043
EBV_4535_rc Human herpesvirus 4 Herpesviridae 115 0.000031 0.017003
Family: Adenoviridae
129951 Human adenovirus C s=0.000372 p=0.966370
9626187_754_rc Human adenovirus type 5 Adenoviridae 372 0.000101 0.024908
9626553_810_rc Human adenovirus F Adenoviridae 124 0.000034 0.011042
9626187_866_rc Human adenovirus type 5 Adenoviridae 40 0.000011 0.023147
9626187_859_rc Human adenovirus type 5 Adenoviridae 31 0.000008 0.022130
9626158_863 Human adenovirus C Adenoviridae 22 0.000006 0.023602
130309 Human adenovirus F s=0.000303 p=0.974498
9626553_810_rc Human adenovirus F Adenoviridae 124 0.000034 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 106 0.000029 0.033578
9626187_754_rc Human adenovirus type 5 Adenoviridae 372 0.000101 0.005638
9626553_793_rc Human adenovirus F Adenoviridae 49 0.000013 0.024888
9632407_712_rc Human adenovirus D Adenoviridae 31 0.000008 0.020159
130310 Human adenovirus D s=0.000217 p=0.989887
9626553_810_rc Human adenovirus F Adenoviridae 124 0.000034 0.008998
9626187_754_rc Human adenovirus type 5 Adenoviridae 372 0.000101 0.003006
9626553_717_rc Human adenovirus F Adenoviridae 106 0.000029 0.009573
9632407_712_rc Human adenovirus D Adenoviridae 31 0.000008 0.024150
9632407_717 Human adenovirus D Adenoviridae 24 0.000007 0.022854
130369 Porcine adenovirus A s=0.000141 p=0.992982
9626187_754_rc Human adenovirus type 5 Adenoviridae 372 0.000101 0.003283
9626553_717_rc Human adenovirus F Adenoviridae 106 0.000029 0.005708
9626187_866_rc Human adenovirus type 5 Adenoviridae 40 0.000011 0.012951
9626553_810_rc Human adenovirus F Adenoviridae 124 0.000034 0.003970
9632275_854 Porcine adenovirus A Adenoviridae 15 0.000004 0.030482
Iteration: 2
Family: Picornaviridae
147712 Human rhinovirus B s=0.113696 p=0.000853
9626735_14_rc Human rhinovirus B Picornaviridae 65451 0.075233 0.024898
9626735_257 Human rhinovirus B Picornaviridae 54149 0.062242 0.019989
9626735_20_rc Human rhinovirus B Picornaviridae 5757 0.006617 0.021059
9626735_14 Human rhinovirus B Picornaviridae 1423 0.001636 0.024898
9626735_218_rc Human rhinovirus B Picornaviridae 840 0.000966 0.014507
169066 Human rhinovirus sp. s=0.051140 p=0.000837
61098_45 Human rhinovirus sp. Picornaviridae 26865 0.030880 0.033441
61098_45_rc Human rhinovirus sp. Picornaviridae 20303 0.023337 0.033441
61098_276 Human rhinovirus sp. Picornaviridae 893 0.001026 0.037355
61098_77_rc Human rhinovirus sp. Picornaviridae 171 0.000197 0.039854
61098_248 Human rhinovirus sp. Picornaviridae 228 0.000262 0.029083
106966 Porcine enterovirus B s=0.018759 p=0.077463
9629634_282_rc Porcine enterovirus B Picornaviridae 11963 0.013751 0.023745
9629634_9_rc Porcine enterovirus B Picornaviridae 2467 0.002836 0.026943
9632987_1_rc Human coxsackievirus B2 Picornaviridae 2370 0.002724 0.015819
9632987_14_rc Human coxsackievirus B2 Picornaviridae 6010 0.006908 0.005843
9629634_11_rc Porcine enterovirus B Picornaviridae 888 0.001021 0.031252
46633 Human echovirus 1 s=0.015568 p=0.128044
21363125_2 Human echovirus 1 Picornaviridae 6079 0.006988 0.016623
9632987_14_rc Human coxsackievirus B2 Picornaviridae 6010 0.006908 0.011800
9632987_1_rc Human coxsackievirus B2 Picornaviridae 2370 0.002724 0.011746
9629458_14_rc Human echovirus 12 Picornaviridae 2311 0.002656 0.009697
9632987_20_rc Human coxsackievirus B2 Picornaviridae 3193 0.003670 0.003362
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.015026 p=0.012742
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 8779 0.010091 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 1694 0.001947 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 903 0.001038 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 536 0.000616 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 317 0.000364 0.055619
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.001559 p=0.784661
EBV_5024_rc Human herpesvirus 4 Herpesviridae 508 0.000584 0.013853
EBV_4323_rc Human herpesvirus 4 Herpesviridae 425 0.000489 0.016287
EBV_4540_rc Human herpesvirus 4 Herpesviridae 421 0.000484 0.014954
EBV_3139_rc Human herpesvirus 4 Herpesviridae 124 0.000143 0.016043
EBV_4535_rc Human herpesvirus 4 Herpesviridae 115 0.000132 0.017003
Family: Adenoviridae
129951 Human adenovirus C s=0.000858 p=0.879959
9626187_754_rc Human adenovirus type 5 Adenoviridae 372 0.000428 0.024908
9626553_810_rc Human adenovirus F Adenoviridae 124 0.000143 0.011042
9626187_866_rc Human adenovirus type 5 Adenoviridae 40 0.000046 0.023147
9626187_859_rc Human adenovirus type 5 Adenoviridae 31 0.000036 0.022130
9626158_268 Human adenovirus C Adenoviridae 20 0.000023 0.026380
130309 Human adenovirus F s=0.000700 p=0.883396
9626553_810_rc Human adenovirus F Adenoviridae 124 0.000143 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 106 0.000122 0.033578
9626187_754_rc Human adenovirus type 5 Adenoviridae 372 0.000428 0.005638
9626553_793_rc Human adenovirus F Adenoviridae 49 0.000056 0.024888
9632407_712_rc Human adenovirus D Adenoviridae 31 0.000036 0.020159
130310 Human adenovirus D s=0.000499 p=0.945426
9626553_810_rc Human adenovirus F Adenoviridae 124 0.000143 0.008998
9626187_754_rc Human adenovirus type 5 Adenoviridae 372 0.000428 0.003006
9626553_717_rc Human adenovirus F Adenoviridae 106 0.000122 0.009573
9632407_712_rc Human adenovirus D Adenoviridae 31 0.000036 0.024150
9632407_717 Human adenovirus D Adenoviridae 24 0.000028 0.022854
130369 Porcine adenovirus A s=0.000331 p=0.964483
9626187_754_rc Human adenovirus type 5 Adenoviridae 372 0.000428 0.003283
9626553_717_rc Human adenovirus F Adenoviridae 106 0.000122 0.005708
9626187_866_rc Human adenovirus type 5 Adenoviridae 40 0.000046 0.012951
9626553_810_rc Human adenovirus F Adenoviridae 124 0.000143 0.003970
9632275_854 Porcine adenovirus A Adenoviridae 15 0.000017 0.030482
GSM40831
EPREDICT : 2007-03-28 14:19:43 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40831
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40831:GSM40831
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.155757 p=0.000123
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 6440 0.017304 0.036179
9626069_114_P70 Human papillomavirus type 18 Papillomaviridae 3627 0.009746 0.036179
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 2752 0.007395 0.035142
9626069_291_P70_rc Human papillomavirus type 18 Papillomaviridae 2521 0.006774 0.033850
9626069_187_P70 Human papillomavirus type 18 Papillomaviridae 1999 0.005371 0.035142
10593 Human papillomavirus type 45 s=0.044249 p=0.009718
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 6440 0.017304 0.009866
9626069_291_P70_rc Human papillomavirus type 18 Papillomaviridae 2521 0.006774 0.014299
9626069_114_P70 Human papillomavirus type 18 Papillomaviridae 3627 0.009746 0.009866
9626069_269 Human papillomavirus type 18 Papillomaviridae 1904 0.005116 0.012905
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 1542 0.004143 0.012905
44028 Human papillomavirus type 74 s=0.010178 p=0.097181
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 1184 0.003181 0.011036
9626069_269 Human papillomavirus type 18 Papillomaviridae 1904 0.005116 0.005564
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 1542 0.004143 0.005564
9626069_252 Human papillomavirus type 18 Papillomaviridae 522 0.001403 0.011036
9627305_81 Human papillomavirus type 26 Papillomaviridae 342 0.000919 0.009812
37120 Human papillomavirus type 67 s=0.009432 p=0.159651
9626069_263 Human papillomavirus type 18 Papillomaviridae 2021 0.005430 0.009655
9626069_263_rc Human papillomavirus type 18 Papillomaviridae 1857 0.004990 0.009655
9627257_272 Human papillomavirus type 10 Papillomaviridae 388 0.001043 0.009047
9627334_50_rc Human papillomavirus type 34 Papillomaviridae 53 0.000142 0.018253
9627334_50 Human papillomavirus type 34 Papillomaviridae 53 0.000142 0.018253
10586 Human papillomavirus type 33 s=0.008948 p=0.055162
9627118_263 Human papillomavirus type 33 Papillomaviridae 739 0.001986 0.029086
9627118_263_rc Human papillomavirus type 33 Papillomaviridae 319 0.000857 0.029086
9626069_263 Human papillomavirus type 18 Papillomaviridae 2021 0.005430 0.003138
9626069_263_rc Human papillomavirus type 18 Papillomaviridae 1857 0.004990 0.003138
9628412_270 Human papillomavirus type 6a Papillomaviridae 211 0.000567 0.008175
Family: NA
53010 Cotton leaf curl virus s=0.008483 p=0.363347
16507262_57 Cotton leaf curl virus Geminiviridae 207 0.000556 0.014580
16507262_57_rc Cotton leaf curl virus Geminiviridae 131 0.000352 0.014580
20564177_88_rc Chino del tomate virus Geminiviridae 166 0.000446 0.007514
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 179 0.000481 0.006248
9629636_87_rc Tomato mottle Taino virus Geminiviridae 140 0.000376 0.007104
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.008332 p=0.444817
HCMVIRL11_517 Human herpesvirus 5 Herpesviridae 410 0.001102 0.004536
HCMVUL106_103 Human herpesvirus 5 Herpesviridae 132 0.000355 0.005520
HCMVUL24_94 Human herpesvirus 5 Herpesviridae 102 0.000274 0.006163
HCMVUL57_180 Human herpesvirus 5 Herpesviridae 116 0.000312 0.005094
HCMVUL95_185 Human herpesvirus 5 Herpesviridae 106 0.000285 0.005059
Family: Polyomaviridae
10632 JC virus s=0.007730 p=0.224793
9628642_23 JC virus Polyomaviridae 975 0.002620 0.075914
9628642_130_rc JC virus Polyomaviridae 88 0.000236 0.061694
9628421_25 Simian virus 40 Polyomaviridae 103 0.000277 0.030230
9628642_23_rc JC virus Polyomaviridae 28 0.000075 0.075914
9628642_56 JC virus Polyomaviridae 26 0.000070 0.068084
Family: Retroviridae
33748 Primate T-lymphotropic virus 2 s=0.007286 p=0.340582
9629498_292_rc Simian T-lymphotropic virus 2 Retroviridae 434 0.001166 0.065223
9629498_118_rc Simian T-lymphotropic virus 2 Retroviridae 144 0.000387 0.054274
9629498_292 Simian T-lymphotropic virus 2 Retroviridae 102 0.000274 0.065223
9629498_294 Simian T-lymphotropic virus 2 Retroviridae 74 0.000199 0.056190
9629498_113_rc Simian T-lymphotropic virus 2 Retroviridae 87 0.000234 0.046063
11788 Abelson murine leukemia virus s=0.007200 p=0.243692
9626958_331_rc Murine leukemia virus Retroviridae 442 0.001188 0.015548
9626953_7_rc Abelson murine leukemia virus Retroviridae 133 0.000357 0.019350
9626096_7_rc Friend murine leukemia virus Retroviridae 154 0.000414 0.016309
9626962_5_rc Moloney murine sarcoma virus Retroviridae 151 0.000406 0.014886
9626953_203_rc Abelson murine leukemia virus Retroviridae 87 0.000234 0.017708
11786 Murine leukemia virus s=0.007200 p=0.242910
9626958_331_rc Murine leukemia virus Retroviridae 442 0.001188 0.015513
9626953_7_rc Abelson murine leukemia virus Retroviridae 133 0.000357 0.019306
9626096_7_rc Friend murine leukemia virus Retroviridae 154 0.000414 0.016272
9626962_5_rc Moloney murine sarcoma virus Retroviridae 151 0.000406 0.014852
9626958_321_rc Murine leukemia virus Retroviridae 109 0.000293 0.016472
Family: Adenoviridae
47680 Tree shrew adenovirus s=0.007180 p=0.274330
17227341_743 Human adenovirus E Adenoviridae 466 0.001252 0.030416
9632275_270 Porcine adenovirus A Adenoviridae 273 0.000734 0.027688
9626621_715_rc Human adenovirus A Adenoviridae 121 0.000325 0.025270
9632275_837_rc Porcine adenovirus A Adenoviridae 133 0.000357 0.014974
9630091_250 Bovine adenovirus B Adenoviridae 60 0.000161 0.028745
Iteration: 2
Family: NA
53010 Cotton leaf curl virus s=0.008649 p=0.358139
16507262_57 Cotton leaf curl virus Geminiviridae 207 0.000627 0.014580
16507262_57_rc Cotton leaf curl virus Geminiviridae 131 0.000397 0.014580
20564177_88_rc Chino del tomate virus Geminiviridae 166 0.000503 0.007514
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 179 0.000542 0.006248
9629636_87_rc Tomato mottle Taino virus Geminiviridae 140 0.000424 0.007104
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.008491 p=0.439134
HCMVIRL11_517 Human herpesvirus 5 Herpesviridae 410 0.001242 0.004536
HCMVUL106_103 Human herpesvirus 5 Herpesviridae 132 0.000400 0.005520
HCMVUL24_94 Human herpesvirus 5 Herpesviridae 102 0.000309 0.006163
HCMVUL57_180 Human herpesvirus 5 Herpesviridae 116 0.000351 0.005094
HCMVUL95_185 Human herpesvirus 5 Herpesviridae 106 0.000321 0.005059
Family: Polyomaviridae
10632 JC virus s=0.007879 p=0.220960
9628642_23 JC virus Polyomaviridae 975 0.002952 0.075914
9628642_130_rc JC virus Polyomaviridae 88 0.000266 0.061694
9628421_25 Simian virus 40 Polyomaviridae 103 0.000312 0.030230
9628642_23_rc JC virus Polyomaviridae 28 0.000085 0.075914
9628642_56 JC virus Polyomaviridae 26 0.000079 0.068084
Family: Retroviridae
33748 Primate T-lymphotropic virus 2 s=0.007424 p=0.335670
9629498_292_rc Simian T-lymphotropic virus 2 Retroviridae 434 0.001314 0.065223
9629498_118_rc Simian T-lymphotropic virus 2 Retroviridae 144 0.000436 0.054274
9629498_292 Simian T-lymphotropic virus 2 Retroviridae 102 0.000309 0.065223
9629498_294 Simian T-lymphotropic virus 2 Retroviridae 74 0.000224 0.056190
9629498_113_rc Simian T-lymphotropic virus 2 Retroviridae 87 0.000263 0.046063
11788 Abelson murine leukemia virus s=0.007335 p=0.238967
9626958_331_rc Murine leukemia virus Retroviridae 442 0.001338 0.015548
9626953_7_rc Abelson murine leukemia virus Retroviridae 133 0.000403 0.019350
9626096_7_rc Friend murine leukemia virus Retroviridae 154 0.000466 0.016309
9626962_5_rc Moloney murine sarcoma virus Retroviridae 151 0.000457 0.014886
9626953_203_rc Abelson murine leukemia virus Retroviridae 87 0.000263 0.017708
11786 Murine leukemia virus s=0.007335 p=0.238191
9626958_331_rc Murine leukemia virus Retroviridae 442 0.001338 0.015513
9626953_7_rc Abelson murine leukemia virus Retroviridae 133 0.000403 0.019306
9626096_7_rc Friend murine leukemia virus Retroviridae 154 0.000466 0.016272
9626962_5_rc Moloney murine sarcoma virus Retroviridae 151 0.000457 0.014852
9626958_321_rc Murine leukemia virus Retroviridae 109 0.000330 0.016472
Family: Adenoviridae
47680 Tree shrew adenovirus s=0.007318 p=0.269443
17227341_743 Human adenovirus E Adenoviridae 466 0.001411 0.030416
9632275_270 Porcine adenovirus A Adenoviridae 273 0.000827 0.027688
9626621_715_rc Human adenovirus A Adenoviridae 121 0.000366 0.025270
9632275_837_rc Porcine adenovirus A Adenoviridae 133 0.000403 0.014974
9630091_250 Bovine adenovirus B Adenoviridae 60 0.000182 0.028745
Family: Totiviridae
155414 Eimeria brunetti RNA virus 1 s=0.006556 p=0.179074
13487887_104 Eimeria brunetti RNA virus 1 Totiviridae 324 0.000981 0.127443
13487887_208 Eimeria brunetti RNA virus 1 Totiviridae 248 0.000751 0.101134
13487887_104_rc Eimeria brunetti RNA virus 1 Totiviridae 89 0.000270 0.127443
13487887_2 Eimeria brunetti RNA virus 1 Totiviridae 109 0.000330 0.103483
13487887_208_rc Eimeria brunetti RNA virus 1 Totiviridae 80 0.000242 0.101134
GSM40832
EPREDICT : 2007-03-28 14:22:34 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40832
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40832:GSM40832
Iteration: 1
Family: Paramyxoviridae
12814 Respiratory syncytial virus s=0.490322 p=0.000000
9629367_435 Respiratory syncytial virus Paramyxoviridae 32762 0.083460 0.038053
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 15989 0.040731 0.050854
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 20713 0.052766 0.036764
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 14705 0.037460 0.047021
9629367_111_rc Respiratory syncytial virus Paramyxoviridae 14189 0.036146 0.044362
11250 Human respiratory syncytial virus s=0.362136 p=0.000003
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 38699 0.098584 0.055394
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 20713 0.052766 0.065924
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 15989 0.040731 0.037270
9629367_111_rc Respiratory syncytial virus Paramyxoviridae 14189 0.036146 0.010829
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 14705 0.037460 0.010181
11246 Bovine respiratory syncytial virus s=0.275844 p=0.000000
9631267_63_rc Bovine respiratory syncytial virus Paramyxoviridae 22231 0.056633 0.048894
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 38699 0.098584 0.019006
9631267_130_rc Bovine respiratory syncytial virus Paramyxoviridae 13562 0.034549 0.048894
9631267_463_rc Bovine respiratory syncytial virus Paramyxoviridae 13117 0.033415 0.049394
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 14705 0.037460 0.023265
162145 Turkey rhinotracheitis virus s=0.021880 p=0.016073
22780169_372_rc Human metapneumovirus Paramyxoviridae 1746 0.004448 0.055561
22780169_372 Human metapneumovirus Paramyxoviridae 1192 0.003037 0.055561
22780169_354_rc Human metapneumovirus Paramyxoviridae 1151 0.002932 0.057362
22780169_354 Human metapneumovirus Paramyxoviridae 1093 0.002784 0.057362
22780169_370_rc Human metapneumovirus Paramyxoviridae 552 0.001406 0.050217
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.007674 p=0.469664
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 4862 0.012386 0.004454
HCMVIRL1_185 Human herpesvirus 5 Herpesviridae 361 0.000920 0.004544
HCMVIRL11_517 Human herpesvirus 5 Herpesviridae 303 0.000772 0.004536
HCMVUL122_8 Human herpesvirus 5 Herpesviridae 233 0.000594 0.004237
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 455 0.001159 0.001862
188763 Chimpanzee cytomegalovirus s=0.005758 p=0.449989
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 4862 0.012386 0.004062
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 455 0.001159 0.026354
9628002_1474 Equid herpesvirus 2 Herpesviridae 501 0.001276 0.004167
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 63 0.000160 0.024872
14250967_5943 Tupaiid herpesvirus 1 Herpesviridae 85 0.000217 0.008178
28304 Rat cytomegalovirus s=0.005710 p=0.392991
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 1566 0.003989 0.029061
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 455 0.001159 0.010271
9845300_2518 Rat cytomegalovirus Maastricht Herpesviridae 24 0.000061 0.028607
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 19 0.000048 0.031290
20198505_2519 Murid herpesvirus 2 Herpesviridae 20 0.000051 0.024892
79700 Rat cytomegalovirus s=0.005710 p=0.392991
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 1566 0.003989 0.029061
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 455 0.001159 0.010271
9845300_2518 Rat cytomegalovirus Maastricht Herpesviridae 24 0.000061 0.028607
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 19 0.000048 0.031290
20198505_2519 Murid herpesvirus 2 Herpesviridae 20 0.000051 0.024892
Family: Picornaviridae
12124 Theilovirus s=0.005005 p=0.178144
9626123_31 Theiler's encephalomyelitis virus Picornaviridae 515 0.001312 0.071154
9626123_74_rc Theiler's encephalomyelitis virus Picornaviridae 412 0.001050 0.066889
9626123_31_rc Theiler's encephalomyelitis virus Picornaviridae 224 0.000571 0.071154
9626692_22_rc Encephalomyocarditis virus Picornaviridae 172 0.000438 0.027198
9626692_22 Encephalomyocarditis virus Picornaviridae 67 0.000171 0.027198
Family: Adenoviridae
129950 Bovine adenovirus B s=0.003210 p=0.277179
9630091_717_rc Bovine adenovirus B Adenoviridae 550 0.001401 0.050052
9626553_717_rc Human adenovirus F Adenoviridae 123 0.000313 0.016789
9630091_250 Bovine adenovirus B Adenoviridae 18 0.000046 0.043523
9630091_717 Bovine adenovirus B Adenoviridae 15 0.000038 0.050052
9632407_712_rc Human adenovirus D Adenoviridae 110 0.000280 0.006517
Family: Hepadnaviridae
68416 Woolly monkey hepatitis B Virus s=0.002906 p=0.512173
9628700_70_rc Hepatitis B virus Hepadnaviridae 423 0.001078 0.021952
9630370_29 Woolly monkey hepatitis B Virus Hepadnaviridae 212 0.000540 0.037593
9628827_24_rc Arctic ground squirrel hepatitis B v Hepadnaviridae 332 0.000846 0.016292
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 127 0.000324 0.012218
9634216_16 Orangutan hepadnavirus Hepadnaviridae 52 0.000132 0.019617
41952 Arctic ground squirrel hepatitis B virus s=0.002709 p=0.475048
9628827_24_rc Arctic ground squirrel hepatitis B v Hepadnaviridae 332 0.000846 0.046692
9628700_70_rc Hepatitis B virus Hepadnaviridae 423 0.001078 0.014216
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 127 0.000324 0.029095
21326584_16 Hepatitis B virus Hepadnaviridae 63 0.000160 0.013203
9628827_70 Arctic ground squirrel hepatitis B v Hepadnaviridae 20 0.000051 0.038033
35269 Woodchuck hepatitis B virus s=0.002648 p=0.482778
9628827_24_rc Arctic ground squirrel hepatitis B v Hepadnaviridae 332 0.000846 0.031183
9628700_70_rc Hepatitis B virus Hepadnaviridae 423 0.001078 0.018741
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 127 0.000324 0.042473
21326584_16 Hepatitis B virus Hepadnaviridae 63 0.000160 0.016707
21326584_75_rc Hepatitis B virus Hepadnaviridae 35 0.000089 0.024072
Family: Tymoviridae
103722 Grapevine fleck virus s=0.002639 p=0.530560
18138525_207_rc Grapevine fleck virus Tymoviridae 151 0.000385 0.069904
18138525_201 Grapevine fleck virus Tymoviridae 105 0.000267 0.077843
18138525_201_rc Grapevine fleck virus Tymoviridae 83 0.000211 0.077843
18138525_214_rc Grapevine fleck virus Tymoviridae 66 0.000168 0.079828
18138525_221 Grapevine fleck virus Tymoviridae 68 0.000173 0.073054
Iteration: 2
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.017827 p=0.236365
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 4862 0.029115 0.004454
HCMVIRL1_185 Human herpesvirus 5 Herpesviridae 361 0.002162 0.004544
HCMVIRL11_517 Human herpesvirus 5 Herpesviridae 303 0.001814 0.004536
HCMVUL122_8 Human herpesvirus 5 Herpesviridae 233 0.001395 0.004237
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 455 0.002725 0.001862
188763 Chimpanzee cytomegalovirus s=0.013380 p=0.221603
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 4862 0.029115 0.004062
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 455 0.002725 0.026354
9628002_1474 Equid herpesvirus 2 Herpesviridae 501 0.003000 0.004167
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 63 0.000377 0.024872
14250967_5943 Tupaiid herpesvirus 1 Herpesviridae 85 0.000509 0.008178
28304 Rat cytomegalovirus s=0.013266 p=0.181202
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 1566 0.009378 0.029061
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 455 0.002725 0.010271
9845300_2518 Rat cytomegalovirus Maastricht Herpesviridae 24 0.000144 0.028607
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 19 0.000114 0.031290
20198505_2519 Murid herpesvirus 2 Herpesviridae 20 0.000120 0.024892
79700 Rat cytomegalovirus s=0.013266 p=0.181202
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 1566 0.009378 0.029061
20026600_5589_rc Pongine herpesvirus 4 Herpesviridae 455 0.002725 0.010271
9845300_2518 Rat cytomegalovirus Maastricht Herpesviridae 24 0.000144 0.028607
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 19 0.000114 0.031290
20198505_2519 Murid herpesvirus 2 Herpesviridae 20 0.000120 0.024892
Family: Picornaviridae
12124 Theilovirus s=0.011623 p=0.051174
9626123_31 Theiler's encephalomyelitis virus Picornaviridae 515 0.003084 0.071154
9626123_74_rc Theiler's encephalomyelitis virus Picornaviridae 412 0.002467 0.066889
9626123_31_rc Theiler's encephalomyelitis virus Picornaviridae 224 0.001341 0.071154
9626692_22_rc Encephalomyocarditis virus Picornaviridae 172 0.001030 0.027198
9626692_22 Encephalomyocarditis virus Picornaviridae 67 0.000401 0.027198
Family: Adenoviridae
129950 Bovine adenovirus B s=0.007457 p=0.093235
9630091_717_rc Bovine adenovirus B Adenoviridae 550 0.003294 0.050052
9626553_717_rc Human adenovirus F Adenoviridae 123 0.000737 0.016789
9630091_250 Bovine adenovirus B Adenoviridae 18 0.000108 0.043523
9630091_717 Bovine adenovirus B Adenoviridae 15 0.000090 0.050052
9632407_712_rc Human adenovirus D Adenoviridae 110 0.000659 0.006517
Family: Hepadnaviridae
68416 Woolly monkey hepatitis B Virus s=0.006751 p=0.277266
9628700_70_rc Hepatitis B virus Hepadnaviridae 423 0.002533 0.021952
9630370_29 Woolly monkey hepatitis B Virus Hepadnaviridae 212 0.001270 0.037593
9628827_24_rc Arctic ground squirrel hepatitis B v Hepadnaviridae 332 0.001988 0.016292
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 127 0.000761 0.012218
9634216_16 Orangutan hepadnavirus Hepadnaviridae 52 0.000311 0.019617
41952 Arctic ground squirrel hepatitis B virus s=0.006293 p=0.248719
9628827_24_rc Arctic ground squirrel hepatitis B v Hepadnaviridae 332 0.001988 0.046692
9628700_70_rc Hepatitis B virus Hepadnaviridae 423 0.002533 0.014216
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 127 0.000761 0.029095
21326584_16 Hepatitis B virus Hepadnaviridae 63 0.000377 0.013203
9628827_70 Arctic ground squirrel hepatitis B v Hepadnaviridae 20 0.000120 0.038033
35269 Woodchuck hepatitis B virus s=0.006152 p=0.253718
9628827_24_rc Arctic ground squirrel hepatitis B v Hepadnaviridae 332 0.001988 0.031183
9628700_70_rc Hepatitis B virus Hepadnaviridae 423 0.002533 0.018741
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 127 0.000761 0.042473
21326584_16 Hepatitis B virus Hepadnaviridae 63 0.000377 0.016707
21326584_75_rc Hepatitis B virus Hepadnaviridae 35 0.000210 0.024072
Family: Tymoviridae
103722 Grapevine fleck virus s=0.006130 p=0.310142
18138525_207_rc Grapevine fleck virus Tymoviridae 151 0.000904 0.069904
18138525_201 Grapevine fleck virus Tymoviridae 105 0.000629 0.077843
18138525_201_rc Grapevine fleck virus Tymoviridae 83 0.000497 0.077843
18138525_214_rc Grapevine fleck virus Tymoviridae 66 0.000395 0.079828
18138525_221 Grapevine fleck virus Tymoviridae 68 0.000407 0.073054
12154 Turnip yellow mosaic virus s=0.005503 p=0.249966
21686950_186_rc Turnip yellow mosaic virus Tymoviridae 277 0.001659 0.070486
21686950_193_rc Turnip yellow mosaic virus Tymoviridae 85 0.000509 0.073992
21686950_197 Turnip yellow mosaic virus Tymoviridae 41 0.000246 0.075047
11067737_182 Chayote mosaic tymovirus Tymoviridae 228 0.001365 0.010442
9629156_135_rc Kennedya yellow mosaic virus Tymoviridae 156 0.000934 0.010051
12158 Kennedya yellow mosaic virus s=0.003808 p=0.397833
9629156_135_rc Kennedya yellow mosaic virus Tymoviridae 156 0.000934 0.075299
9629156_202 Kennedya yellow mosaic virus Tymoviridae 49 0.000293 0.091112
9629156_135 Kennedya yellow mosaic virus Tymoviridae 30 0.000180 0.075299
9629156_196_rc Kennedya yellow mosaic virus Tymoviridae 26 0.000156 0.068681
11067737_182 Chayote mosaic tymovirus Tymoviridae 228 0.001365 0.005704
Family: Retroviridae
11909 Primate T-lymphotropic virus 2 s=0.003765 p=0.497259
9632565_301_rc Simian T-lymphotropic virus 1 Retroviridae 176 0.001054 0.029844
9626726_296_rc Human T-lymphotropic virus 2 Retroviridae 91 0.000545 0.056313
9626953_5 Abelson murine leukemia virus Retroviridae 278 0.001665 0.003982
9629498_113_rc Simian T-lymphotropic virus 2 Retroviridae 73 0.000437 0.012948
9632565_301 Simian T-lymphotropic virus 1 Retroviridae 27 0.000162 0.029844
GSM40833
EPREDICT : 2007-03-28 14:24:35 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40833
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40833:GSM40833
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.318090 p=0.003688
9627730_13_rc Human rhinovirus A Picornaviridae 65425 0.016015 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65407 0.016011 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65420 0.016014 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65441 0.016019 0.018468
9627730_22_rc Human rhinovirus A Picornaviridae 65436 0.016018 0.016616
12090 Human enterovirus D s=0.190616 p=0.000133
9626436_18_rc Human enterovirus 70 Picornaviridae 65446 0.016021 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 51040 0.012494 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65409 0.016011 0.018469
12408699_21_rc Poliovirus Picornaviridae 65456 0.016023 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 54075 0.013237 0.014212
123738 Enterovirus Yanbian 96-83csf s=0.177073 p=0.000429
21363125_18_rc Human echovirus 1 Picornaviridae 65445 0.016020 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65455 0.016023 0.013331
9627719_22_rc Human enterovirus A Picornaviridae 65451 0.016022 0.012615
9626677_22_rc Human enterovirus B Picornaviridae 60522 0.014815 0.012676
9626433_17_rc Human enterovirus C Picornaviridae 65409 0.016011 0.007690
138953 Poliovirus s=0.173532 p=0.000123
12408699_21_rc Poliovirus Picornaviridae 65456 0.016023 0.030078
12408699_18_rc Poliovirus Picornaviridae 65441 0.016019 0.028609
9626433_17_rc Human enterovirus C Picornaviridae 65409 0.016011 0.017603
9626436_18_rc Human enterovirus 70 Picornaviridae 65446 0.016021 0.010854
9626436_21_rc Human enterovirus 70 Picornaviridae 51040 0.012494 0.013701
147712 Human rhinovirus B s=0.161782 p=0.000271
9626735_14_rc Human rhinovirus B Picornaviridae 65437 0.016018 0.024898
9626735_18_rc Human rhinovirus B Picornaviridae 65440 0.016019 0.022396
9626735_20_rc Human rhinovirus B Picornaviridae 65405 0.016011 0.021059
9626735_22_rc Human rhinovirus B Picornaviridae 65398 0.016009 0.019391
9629176_21_rc Human rhinovirus 16 Picornaviridae 65415 0.016013 0.005246
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.006233 p=0.031157
17426217_138 Enterobacteria phage M13 Inoviridae 3284 0.000804 0.099983
17426217_128 Enterobacteria phage M13 Inoviridae 2112 0.000517 0.091108
17426217_25_rc Enterobacteria phage M13 Inoviridae 1502 0.000368 0.093522
17426217_25 Enterobacteria phage M13 Inoviridae 1407 0.000344 0.093522
17426217_128_rc Enterobacteria phage M13 Inoviridae 528 0.000129 0.091108
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.005412 p=0.099119
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 5405 0.001323 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 2252 0.000551 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 1643 0.000402 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 719 0.000176 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 183 0.000045 0.055619
Family: NA
89463 Sacbrood virus s=0.003905 p=0.135306
9632405_343_rc Sacbrood virus Iflavirus 5925 0.001450 0.063762
9632405_343 Sacbrood virus Iflavirus 197 0.000048 0.063762
9632405_167_rc Sacbrood virus Iflavirus 155 0.000038 0.052637
9632405_347_rc Sacbrood virus Iflavirus 150 0.000037 0.049549
9632405_349_rc Sacbrood virus Iflavirus 104 0.000025 0.042675
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.001747 p=0.756549
EBV_4323_rc Human herpesvirus 4 Herpesviridae 1540 0.000377 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1756 0.000430 0.013853
EBV_4540_rc Human herpesvirus 4 Herpesviridae 446 0.000109 0.014954
EBV_6200_rc Human herpesvirus 4 Herpesviridae 371 0.000091 0.014928
EBV_3139_rc Human herpesvirus 4 Herpesviridae 169 0.000041 0.016043
Family: Adenoviridae
130309 Human adenovirus F s=0.001362 p=0.721915
9626553_810_rc Human adenovirus F Adenoviridae 1187 0.000291 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 309 0.000076 0.033578
9626187_818_rc Human adenovirus type 5 Adenoviridae 795 0.000195 0.006810
9626553_711_rc Human adenovirus F Adenoviridae 189 0.000046 0.028761
9626553_793_rc Human adenovirus F Adenoviridae 96 0.000023 0.024888
Iteration: 2
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.129374 p=0.000029
61098_178 Human rhinovirus sp. Picornaviridae 65455 0.060704 0.034722
61098_45 Human rhinovirus sp. Picornaviridae 24985 0.023172 0.033441
61098_58 Human rhinovirus sp. Picornaviridae 22064 0.020463 0.036984
61098_187 Human rhinovirus sp. Picornaviridae 7645 0.007090 0.036614
61098_178_rc Human rhinovirus sp. Picornaviridae 2323 0.002154 0.034722
147712 Human rhinovirus B s=0.116215 p=0.000796
9626735_14_rc Human rhinovirus B Picornaviridae 65437 0.060688 0.024898
9626735_20_rc Human rhinovirus B Picornaviridae 65405 0.060658 0.021059
9626735_43 Human rhinovirus B Picornaviridae 1995 0.001850 0.019689
9626735_43_rc Human rhinovirus B Picornaviridae 1334 0.001237 0.019689
9626735_279_rc Human rhinovirus B Picornaviridae 879 0.000815 0.016567
46633 Human echovirus 1 s=0.019487 p=0.090542
21363125_2 Human echovirus 1 Picornaviridae 5460 0.005064 0.016623
9632987_14_rc Human coxsackievirus B2 Picornaviridae 6519 0.006046 0.011800
9629458_14_rc Human echovirus 12 Picornaviridae 4788 0.004440 0.009697
9632987_1_rc Human coxsackievirus B2 Picornaviridae 3426 0.003177 0.011746
13242737_13_rc Enterovirus CA55-1988 Picornaviridae 1089 0.001010 0.015355
123738 Enterovirus Yanbian 96-83csf s=0.019104 p=0.090420
9632987_14_rc Human coxsackievirus B2 Picornaviridae 6519 0.006046 0.012676
21363125_2 Human echovirus 1 Picornaviridae 5460 0.005064 0.011270
9632987_1_rc Human coxsackievirus B2 Picornaviridae 3426 0.003177 0.013205
9629458_14_rc Human echovirus 12 Picornaviridae 4788 0.004440 0.005620
9635432_20 Human coxsackievirus A9 Picornaviridae 2942 0.002728 0.008756
138949 Human enterovirus B s=0.016642 p=0.097551
9632987_14_rc Human coxsackievirus B2 Picornaviridae 6519 0.006046 0.008533
9629458_14_rc Human echovirus 12 Picornaviridae 4788 0.004440 0.009457
9635432_20 Human coxsackievirus A9 Picornaviridae 2942 0.002728 0.013908
21363125_2 Human echovirus 1 Picornaviridae 5460 0.005064 0.005556
9632987_1_rc Human coxsackievirus B2 Picornaviridae 3426 0.003177 0.007971
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.014230 p=0.005436
17426217_138 Enterobacteria phage M13 Inoviridae 3284 0.003046 0.099983
17426217_128 Enterobacteria phage M13 Inoviridae 2112 0.001959 0.091108
17426217_25_rc Enterobacteria phage M13 Inoviridae 1502 0.001393 0.093522
17426217_25 Enterobacteria phage M13 Inoviridae 1407 0.001305 0.093522
17426217_128_rc Enterobacteria phage M13 Inoviridae 528 0.000490 0.091108
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.012349 p=0.020087
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 5405 0.005013 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 2252 0.002089 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 1643 0.001524 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 719 0.000667 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 183 0.000170 0.055619
Family: NA
89463 Sacbrood virus s=0.008920 p=0.032763
9632405_343_rc Sacbrood virus Iflavirus 5925 0.005495 0.063762
9632405_343 Sacbrood virus Iflavirus 197 0.000183 0.063762
9632405_167_rc Sacbrood virus Iflavirus 155 0.000144 0.052637
9632405_347_rc Sacbrood virus Iflavirus 150 0.000139 0.049549
9632405_349_rc Sacbrood virus Iflavirus 104 0.000096 0.042675
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.003989 p=0.508920
EBV_4323_rc Human herpesvirus 4 Herpesviridae 1540 0.001428 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1756 0.001629 0.013853
EBV_4540_rc Human herpesvirus 4 Herpesviridae 446 0.000414 0.014954
EBV_6200_rc Human herpesvirus 4 Herpesviridae 371 0.000344 0.014928
EBV_3139_rc Human herpesvirus 4 Herpesviridae 169 0.000157 0.016043
Family: Adenoviridae
130309 Human adenovirus F s=0.003123 p=0.434880
9626553_810_rc Human adenovirus F Adenoviridae 1187 0.001101 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 309 0.000287 0.033578
9626553_711_rc Human adenovirus F Adenoviridae 189 0.000175 0.028761
9626187_818_rc Human adenovirus type 5 Adenoviridae 795 0.000737 0.006810
9626553_793_rc Human adenovirus F Adenoviridae 96 0.000089 0.024888
GSM40834
EPREDICT : 2007-03-28 14:26:55 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40834
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40834:GSM40834
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.316512 p=0.003728
9627730_13_rc Human rhinovirus A Picornaviridae 65407 0.011243 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65404 0.011243 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65284 0.011222 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65411 0.011244 0.018468
9627730_22_rc Human rhinovirus A Picornaviridae 65406 0.011243 0.016616
123738 Enterovirus Yanbian 96-83csf s=0.182478 p=0.000390
9627719_18_rc Human enterovirus A Picornaviridae 65437 0.011249 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 65399 0.011242 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65431 0.011248 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65409 0.011244 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65422 0.011246 0.012615
12090 Human enterovirus D s=0.180065 p=0.000163
9626436_18_rc Human enterovirus 70 Picornaviridae 65418 0.011245 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65434 0.011248 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65383 0.011239 0.018469
12408699_21_rc Poliovirus Picornaviridae 65438 0.011249 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65434 0.011248 0.014212
169066 Human rhinovirus sp. s=0.177299 p=0.000008
61098_178 Human rhinovirus sp. Picornaviridae 65420 0.011246 0.034722
61098_255 Human rhinovirus sp. Picornaviridae 65434 0.011248 0.029611
61098_131_rc Human rhinovirus sp. Picornaviridae 59495 0.010227 0.032392
61098_248 Human rhinovirus sp. Picornaviridae 65430 0.011247 0.029083
61098_131 Human rhinovirus sp. Picornaviridae 39772 0.006837 0.032392
46633 Human echovirus 1 s=0.161859 p=0.000599
21363125_21_rc Human echovirus 1 Picornaviridae 65408 0.011244 0.018603
21363125_18_rc Human echovirus 1 Picornaviridae 65399 0.011242 0.018139
9627719_18_rc Human enterovirus A Picornaviridae 65437 0.011249 0.012473
9626677_18_rc Human enterovirus B Picornaviridae 65431 0.011248 0.011222
9627719_22_rc Human enterovirus A Picornaviridae 65422 0.011246 0.008849
Family: NA
89463 Sacbrood virus s=0.019139 p=0.005776
9632405_343_rc Sacbrood virus Iflavirus 35528 0.006107 0.063762
9632405_343 Sacbrood virus Iflavirus 672 0.000116 0.063762
9632405_347_rc Sacbrood virus Iflavirus 818 0.000141 0.049549
9632405_167_rc Sacbrood virus Iflavirus 507 0.000087 0.052637
9632405_349_rc Sacbrood virus Iflavirus 490 0.000084 0.042675
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.012645 p=0.019043
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 19439 0.003342 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 3426 0.000589 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2758 0.000474 0.052060
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 1220 0.000210 0.055619
9629935_396 Rhopalosiphum padi virus Dicistroviridae 1126 0.000194 0.051960
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.009981 p=0.012115
17426217_142 Enterobacteria phage M13 Inoviridae 6453 0.001109 0.076782
17426217_138 Enterobacteria phage M13 Inoviridae 4314 0.000742 0.099983
17426217_128_rc Enterobacteria phage M13 Inoviridae 3664 0.000630 0.091108
17426217_128 Enterobacteria phage M13 Inoviridae 2073 0.000356 0.091108
17426217_138_rc Enterobacteria phage M13 Inoviridae 683 0.000117 0.099983
Family: Tymoviridae
12153 Ononis yellow mosaic virus s=0.003550 p=0.192063
9627010_36 Ononis yellow mosaic virus Tymoviridae 4721 0.000812 0.113416
9626694_199 Eggplant mosaic virus Tymoviridae 1837 0.000316 0.011223
9626694_199_rc Eggplant mosaic virus Tymoviridae 951 0.000163 0.011223
9627010_192_rc Ononis yellow mosaic virus Tymoviridae 73 0.000013 0.105062
9627010_24_rc Ononis yellow mosaic virus Tymoviridae 65 0.000011 0.099101
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.003399 p=0.560725
EBV_5024_rc Human herpesvirus 4 Herpesviridae 3056 0.000525 0.013853
EBV_4323_rc Human herpesvirus 4 Herpesviridae 2311 0.000397 0.016287
EBV_6200_rc Human herpesvirus 4 Herpesviridae 1541 0.000265 0.014928
EBV_4540_rc Human herpesvirus 4 Herpesviridae 1379 0.000237 0.014954
EBV_4535_rc Human herpesvirus 4 Herpesviridae 775 0.000133 0.017003
Iteration: 2
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.186339 p=0.000006
61098_178 Human rhinovirus sp. Picornaviridae 65420 0.029829 0.034722
61098_131_rc Human rhinovirus sp. Picornaviridae 59495 0.027127 0.032392
61098_248 Human rhinovirus sp. Picornaviridae 65430 0.029834 0.029083
61098_131 Human rhinovirus sp. Picornaviridae 39772 0.018135 0.032392
61098_276_rc Human rhinovirus sp. Picornaviridae 23579 0.010751 0.037355
147712 Human rhinovirus B s=0.090097 p=0.001721
9626735_14_rc Human rhinovirus B Picornaviridae 65400 0.029820 0.024898
9626735_20_rc Human rhinovirus B Picornaviridae 65362 0.029803 0.021059
9626735_25_rc Human rhinovirus B Picornaviridae 13174 0.006007 0.017261
9626735_43 Human rhinovirus B Picornaviridae 3747 0.001708 0.019689
9626735_3 Human rhinovirus B Picornaviridae 1520 0.000693 0.019131
123738 Enterovirus Yanbian 96-83csf s=0.038337 p=0.024868
21363125_2 Human echovirus 1 Picornaviridae 25480 0.011618 0.011270
9632987_14_rc Human coxsackievirus B2 Picornaviridae 13149 0.005995 0.012676
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 9966 0.004544 0.012188
9632987_1_rc Human coxsackievirus B2 Picornaviridae 7149 0.003260 0.013205
9627719_1_rc Human enterovirus A Picornaviridae 6834 0.003116 0.007311
46633 Human echovirus 1 s=0.036803 p=0.028150
21363125_2 Human echovirus 1 Picornaviridae 25480 0.011618 0.016623
9632987_14_rc Human coxsackievirus B2 Picornaviridae 13149 0.005995 0.011800
9632987_1_rc Human coxsackievirus B2 Picornaviridae 7149 0.003260 0.011746
9629458_14_rc Human echovirus 12 Picornaviridae 5742 0.002618 0.009697
9627719_1_rc Human enterovirus A Picornaviridae 6834 0.003116 0.007480
Family: NA
89463 Sacbrood virus s=0.036394 p=0.000963
9632405_343_rc Sacbrood virus Iflavirus 35528 0.016199 0.063762
9632405_343 Sacbrood virus Iflavirus 672 0.000306 0.063762
9632405_347_rc Sacbrood virus Iflavirus 818 0.000373 0.049549
9632405_167_rc Sacbrood virus Iflavirus 507 0.000231 0.052637
9632405_349_rc Sacbrood virus Iflavirus 490 0.000223 0.042675
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.024049 p=0.003789
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 19439 0.008863 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 3426 0.001562 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2758 0.001258 0.052060
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 1220 0.000556 0.055619
9629935_396 Rhopalosiphum padi virus Dicistroviridae 1126 0.000513 0.051960
Family: Inoviridae
10870 Enterobacteria phage M13 s=0.018984 p=0.002675
17426217_142 Enterobacteria phage M13 Inoviridae 6453 0.002942 0.076782
17426217_138 Enterobacteria phage M13 Inoviridae 4314 0.001967 0.099983
17426217_128_rc Enterobacteria phage M13 Inoviridae 3664 0.001671 0.091108
17426217_128 Enterobacteria phage M13 Inoviridae 2073 0.000945 0.091108
17426217_138_rc Enterobacteria phage M13 Inoviridae 683 0.000311 0.099983
Family: Tymoviridae
12153 Ononis yellow mosaic virus s=0.006754 p=0.089968
9627010_36 Ononis yellow mosaic virus Tymoviridae 4721 0.002153 0.113416
9626694_199 Eggplant mosaic virus Tymoviridae 1837 0.000838 0.011223
9626694_199_rc Eggplant mosaic virus Tymoviridae 951 0.000434 0.011223
9627010_192_rc Ononis yellow mosaic virus Tymoviridae 73 0.000033 0.105062
9627010_24_rc Ononis yellow mosaic virus Tymoviridae 65 0.000030 0.099101
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.006471 p=0.354976
EBV_5024_rc Human herpesvirus 4 Herpesviridae 3056 0.001393 0.013853
EBV_4323_rc Human herpesvirus 4 Herpesviridae 2311 0.001054 0.016287
EBV_6200_rc Human herpesvirus 4 Herpesviridae 1541 0.000703 0.014928
EBV_4540_rc Human herpesvirus 4 Herpesviridae 1379 0.000629 0.014954
EBV_4535_rc Human herpesvirus 4 Herpesviridae 775 0.000353 0.017003
GSM40835
EPREDICT : 2007-03-28 14:31:04 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40835
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40835:GSM40835
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.474680 p=0.000003
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 55595 0.039560 0.036179
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 55525 0.039511 0.031469
9626069_269 Human papillomavirus type 18 Papillomaviridae 56459 0.040175 0.028366
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 25131 0.017883 0.035142
9626069_80_rc Human papillomavirus type 18 Papillomaviridae 28803 0.020496 0.030247
10593 Human papillomavirus type 45 s=0.175396 p=0.000323
9626069_269 Human papillomavirus type 18 Papillomaviridae 56459 0.040175 0.012905
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 55595 0.039560 0.009866
9627356_269 Human papillomavirus type 45 Papillomaviridae 15995 0.011382 0.030872
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 55525 0.039511 0.007905
9626069_291_P70_rc Human papillomavirus type 18 Papillomaviridae 20949 0.014907 0.014299
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.072436 p=0.018175
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 17495 0.012449 0.091863
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 12331 0.008775 0.091863
9635035_1906 Gallid herpesvirus 2 Herpesviridae 2076 0.001477 0.033462
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 2980 0.002121 0.006175
9635035_1906_rc Gallid herpesvirus 2 Herpesviridae 427 0.000304 0.033462
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.022562 p=0.063500
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 5202 0.003702 0.228244
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 1690 0.001203 0.130329
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 541 0.000385 0.255549
16507983_164 Human endogenous retrovirus K115 Retroviridae 132 0.000094 0.255549
16507983_187 Human endogenous retrovirus K115 Retroviridae 108 0.000077 0.130329
Family: Polyomaviridae
12480 African green monkey polyomavirus s=0.016517 p=0.015927
9627174_121_rc Monkey B-lymphotropic papovavirus Papillomaviridae 2730 0.001943 0.103403
9627174_121 Monkey B-lymphotropic papovavirus Papillomaviridae 1267 0.000902 0.103403
9627174_89 Monkey B-lymphotropic papovavirus Papillomaviridae 1099 0.000782 0.086250
9627174_109_rc Monkey B-lymphotropic papovavirus Papillomaviridae 947 0.000674 0.077373
9627174_109 Monkey B-lymphotropic papovavirus Papillomaviridae 878 0.000625 0.077373
Family: Tymoviridae
107950 Chayote mosaic tymovirus s=0.016106 p=0.108949
11067737_131 Chayote mosaic tymovirus Tymoviridae 6115 0.004351 0.085153
11067737_200_rc Chayote mosaic tymovirus Tymoviridae 308 0.000219 0.088710
11067737_182_rc Chayote mosaic tymovirus Tymoviridae 298 0.000212 0.086774
11067737_182 Chayote mosaic tymovirus Tymoviridae 89 0.000063 0.086774
11067737_115_rc Chayote mosaic tymovirus Tymoviridae 79 0.000056 0.074644
Family: NA
12475 Hepatitis delta virus s=0.015053 p=0.148884
13277517_1201_P70 Hepatitis delta virus Deltavirus 4113 0.002927 0.050159
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 2907 0.002069 0.051728
13277517_1511_P70 Hepatitis delta virus Deltavirus 1334 0.000949 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 700 0.000498 0.051914
13277517_1385_P70 Hepatitis delta virus Deltavirus 628 0.000447 0.051449
Iteration: 2
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.107652 p=0.009865
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 17495 0.017847 0.091863
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 12331 0.012579 0.091863
9635035_1906 Gallid herpesvirus 2 Herpesviridae 2076 0.002118 0.033462
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 2980 0.003040 0.006175
9635035_1906_rc Gallid herpesvirus 2 Herpesviridae 427 0.000436 0.033462
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.033530 p=0.041625
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 5202 0.005307 0.228244
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 1690 0.001724 0.130329
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 541 0.000552 0.255549
16507983_164 Human endogenous retrovirus K115 Retroviridae 132 0.000135 0.255549
16507983_187 Human endogenous retrovirus K115 Retroviridae 108 0.000110 0.130329
Family: Polyomaviridae
12480 African green monkey polyomavirus s=0.024541 p=0.007018
9627174_121_rc Monkey B-lymphotropic papovavirus Papillomaviridae 2730 0.002785 0.103403
9627174_121 Monkey B-lymphotropic papovavirus Papillomaviridae 1267 0.001293 0.103403
9627174_89 Monkey B-lymphotropic papovavirus Papillomaviridae 1099 0.001121 0.086250
9627174_109_rc Monkey B-lymphotropic papovavirus Papillomaviridae 947 0.000966 0.077373
9627174_109 Monkey B-lymphotropic papovavirus Papillomaviridae 878 0.000896 0.077373
Family: Papillomaviridae
10574 Monkey B-lymphotropic papovavirus s=0.024417 p=0.006700
9627174_121_rc Monkey B-lymphotropic papovavirus Papillomaviridae 2730 0.002785 0.100039
9627174_121 Monkey B-lymphotropic papovavirus Papillomaviridae 1267 0.001293 0.100039
9627174_89 Monkey B-lymphotropic papovavirus Papillomaviridae 1099 0.001121 0.083444
9627174_109_rc Monkey B-lymphotropic papovavirus Papillomaviridae 947 0.000966 0.091742
9627174_109 Monkey B-lymphotropic papovavirus Papillomaviridae 878 0.000896 0.091742
Family: Tymoviridae
107950 Chayote mosaic tymovirus s=0.023946 p=0.066358
11067737_131 Chayote mosaic tymovirus Tymoviridae 6115 0.006238 0.085153
11067737_200_rc Chayote mosaic tymovirus Tymoviridae 308 0.000314 0.088710
11067737_182_rc Chayote mosaic tymovirus Tymoviridae 298 0.000304 0.086774
11067737_182 Chayote mosaic tymovirus Tymoviridae 89 0.000091 0.086774
11067737_115_rc Chayote mosaic tymovirus Tymoviridae 79 0.000081 0.074644
Family: NA
12475 Hepatitis delta virus s=0.022378 p=0.094422
13277517_1201_P70 Hepatitis delta virus Deltavirus 4113 0.004196 0.050159
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 2907 0.002966 0.051728
13277517_1511_P70 Hepatitis delta virus Deltavirus 1334 0.001361 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 700 0.000714 0.051914
13277517_1385_P70 Hepatitis delta virus Deltavirus 628 0.000641 0.051449
GSM40836
EPREDICT : 2007-03-28 14:35:41 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40836
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40836:GSM40836
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.258430 p=0.000023
9626069_114_P70 Human papillomavirus type 18 Papillomaviridae 7654 0.011419 0.036179
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 7619 0.011367 0.036179
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 9661 0.014414 0.028059
9626069_80 Human papillomavirus type 18 Papillomaviridae 8771 0.013086 0.030247
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 6753 0.010075 0.035142
10593 Human papillomavirus type 45 s=0.119285 p=0.000934
9627356_269 Human papillomavirus type 45 Papillomaviridae 16639 0.024825 0.030872
9626069_269 Human papillomavirus type 18 Papillomaviridae 7684 0.011464 0.012905
9626069_291_P70_rc Human papillomavirus type 18 Papillomaviridae 6827 0.010186 0.014299
9626069_114_P70 Human papillomavirus type 18 Papillomaviridae 7654 0.011419 0.009866
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 7619 0.011367 0.009866
37115 Human papillomavirus type 59 s=0.046498 p=0.000733
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 9661 0.014414 0.030317
9627962_252_rc Human papillomavirus type 59 Papillomaviridae 4598 0.006860 0.051293
9627962_252 Human papillomavirus type 59 Papillomaviridae 2002 0.002987 0.051293
9626069_252 Human papillomavirus type 18 Papillomaviridae 1656 0.002471 0.030317
9626069_81 Human papillomavirus type 18 Papillomaviridae 6349 0.009472 0.007122
10580 Human papillomavirus type 11 s=0.045573 p=0.003486
9627090_269 Human papillomavirus type 11 Papillomaviridae 3445 0.005140 0.037951
9628412_270 Human papillomavirus type 6a Papillomaviridae 4261 0.006357 0.016010
9627356_269 Human papillomavirus type 45 Papillomaviridae 16639 0.024825 0.003645
9626053_270 Human papillomavirus type 6b Papillomaviridae 3562 0.005314 0.015912
9633484_270 Human papillomavirus type 6 Papillomaviridae 3109 0.004638 0.016010
10600 Human papillomavirus type 6b s=0.036083 p=0.004904
9628412_270 Human papillomavirus type 6a Papillomaviridae 4261 0.006357 0.023735
9626053_270 Human papillomavirus type 6b Papillomaviridae 3562 0.005314 0.023639
9633484_270 Human papillomavirus type 6 Papillomaviridae 3109 0.004638 0.023735
9626069_263 Human papillomavirus type 18 Papillomaviridae 6884 0.010271 0.003240
9627118_263_rc Human papillomavirus type 33 Papillomaviridae 2894 0.004318 0.007028
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.022961 p=0.080526
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 5229 0.007801 0.091863
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 878 0.001310 0.091863
12084824_6098_rc Meleagrid herpesvirus 1 Herpesviridae 186 0.000278 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 1429 0.002132 0.006175
12084824_5205 Meleagrid herpesvirus 1 Herpesviridae 70 0.000104 0.091863
10298 Human herpesvirus 1 s=0.013986 p=0.252078
9629378_4861 Human herpesvirus 1 Herpesviridae 2733 0.004077 0.019798
9629378_4860 Human herpesvirus 1 Herpesviridae 1808 0.002697 0.020550
9629378_193 Human herpesvirus 1 Herpesviridae 1735 0.002589 0.019798
9629378_5995_rc Human herpesvirus 1 Herpesviridae 407 0.000607 0.020741
9629378_194 Human herpesvirus 1 Herpesviridae 338 0.000504 0.020550
10331 Equine herpesvirus 4 s=0.012855 p=0.159188
9629732_5440 Equid herpesvirus 4 Herpesviridae 2916 0.004351 0.046151
9629732_5441 Equid herpesvirus 4 Herpesviridae 1346 0.002008 0.046151
9629378_5995_rc Human herpesvirus 1 Herpesviridae 407 0.000607 0.010599
9629732_2383 Equid herpesvirus 4 Herpesviridae 65 0.000097 0.035055
9629732_2109 Equid herpesvirus 4 Herpesviridae 54 0.000081 0.031734
Family: NA
12475 Hepatitis delta virus s=0.011522 p=0.195632
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 3905 0.005826 0.051728
13277517_1511_P70 Hepatitis delta virus Deltavirus 258 0.000385 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 253 0.000377 0.051914
13277517_1201_P70 Hepatitis delta virus Deltavirus 242 0.000361 0.050159
13277517_35_rc Hepatitis delta virus Deltavirus 153 0.000228 0.060030
Family: Polyomaviridae
10633 Simian virus 40 s=0.011453 p=0.156353
9628421_25 Simian virus 40 Polyomaviridae 2198 0.003279 0.088121
9628421_25_rc Simian virus 40 Polyomaviridae 620 0.000925 0.088121
9628421_23 Simian virus 40 Polyomaviridae 118 0.000176 0.082917
9627180_29_rc BK polyomavirus Polyomaviridae 711 0.001061 0.011924
9628642_23 JC virus Polyomaviridae 245 0.000366 0.032633
Family: Tymoviridae
107950 Chayote mosaic tymovirus s=0.009472 p=0.192437
11067737_200_rc Chayote mosaic tymovirus Tymoviridae 1759 0.002624 0.088710
11067737_131 Chayote mosaic tymovirus Tymoviridae 589 0.000879 0.085153
11067737_182_rc Chayote mosaic tymovirus Tymoviridae 87 0.000130 0.086774
9629156_135_rc Kennedya yellow mosaic virus Tymoviridae 710 0.001059 0.009461
11067737_200 Chayote mosaic tymovirus Tymoviridae 44 0.000066 0.088710
Family: Coronaviridae
11149 Transmissible gastroenteritis virus s=0.008737 p=0.123281
13399293_725_rc Transmissible gastroenteritis virus Coronaviridae 2134 0.003184 0.071392
13399293_725 Transmissible gastroenteritis virus Coronaviridae 737 0.001100 0.071392
13399293_485_rc Transmissible gastroenteritis virus Coronaviridae 32 0.000048 0.072427
13399293_582 Transmissible gastroenteritis virus Coronaviridae 35 0.000052 0.063102
13399293_566 Transmissible gastroenteritis virus Coronaviridae 27 0.000040 0.071540
Iteration: 2
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.024452 p=0.075017
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 5229 0.011296 0.091863
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 878 0.001897 0.091863
12084824_6098_rc Meleagrid herpesvirus 1 Herpesviridae 186 0.000402 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 1429 0.003087 0.006175
12084824_5205 Meleagrid herpesvirus 1 Herpesviridae 70 0.000151 0.091863
Family: Papillomaviridae
10609 Human papillomavirus type 25 s=0.017876 p=0.084469
9627298_177 Human papillomavirus type 25 Papillomaviridae 6402 0.013831 0.029232
9627396_171 Human papillomavirus type 9 Papillomaviridae 2499 0.005399 0.005046
9627298_177_rc Human papillomavirus type 25 Papillomaviridae 240 0.000518 0.029232
9627396_171_rc Human papillomavirus type 9 Papillomaviridae 441 0.000953 0.005046
9627291_253_rc Human papillomavirus type 19 Papillomaviridae 125 0.000270 0.010632
10621 Human papillomavirus type 9 s=0.013737 p=0.099700
9627396_171 Human papillomavirus type 9 Papillomaviridae 2499 0.005399 0.058079
9627298_177 Human papillomavirus type 25 Papillomaviridae 6402 0.013831 0.007546
9627396_171_rc Human papillomavirus type 9 Papillomaviridae 441 0.000953 0.058079
9627298_177_rc Human papillomavirus type 25 Papillomaviridae 240 0.000518 0.007546
9627396_107 Human papillomavirus type 9 Papillomaviridae 23 0.000050 0.055952
Family: NA
12475 Hepatitis delta virus s=0.012273 p=0.183856
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 3905 0.008436 0.051728
13277517_1511_P70 Hepatitis delta virus Deltavirus 258 0.000557 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 253 0.000547 0.051914
13277517_1201_P70 Hepatitis delta virus Deltavirus 242 0.000523 0.050159
13277517_35_rc Hepatitis delta virus Deltavirus 153 0.000331 0.060030
Family: Polyomaviridae
10633 Simian virus 40 s=0.012197 p=0.146655
9628421_25 Simian virus 40 Polyomaviridae 2198 0.004748 0.088121
9628421_25_rc Simian virus 40 Polyomaviridae 620 0.001339 0.088121
9628421_23 Simian virus 40 Polyomaviridae 118 0.000255 0.082917
9627180_29_rc BK polyomavirus Polyomaviridae 711 0.001536 0.011924
9628642_23 JC virus Polyomaviridae 245 0.000529 0.032633
Family: Tymoviridae
107950 Chayote mosaic tymovirus s=0.010086 p=0.180905
11067737_200_rc Chayote mosaic tymovirus Tymoviridae 1759 0.003800 0.088710
11067737_131 Chayote mosaic tymovirus Tymoviridae 589 0.001272 0.085153
11067737_182_rc Chayote mosaic tymovirus Tymoviridae 87 0.000188 0.086774
9629156_135_rc Kennedya yellow mosaic virus Tymoviridae 710 0.001534 0.009461
11067737_200 Chayote mosaic tymovirus Tymoviridae 44 0.000095 0.088710
Family: Coronaviridae
11149 Transmissible gastroenteritis virus s=0.009303 p=0.114350
13399293_725_rc Transmissible gastroenteritis virus Coronaviridae 2134 0.004610 0.071392
13399293_725 Transmissible gastroenteritis virus Coronaviridae 737 0.001592 0.071392
13399293_485_rc Transmissible gastroenteritis virus Coronaviridae 32 0.000069 0.072427
13399293_582 Transmissible gastroenteritis virus Coronaviridae 35 0.000076 0.063102
13399293_566 Transmissible gastroenteritis virus Coronaviridae 27 0.000058 0.071540
GSM40837
EPREDICT : 2007-03-28 14:38:30 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40837
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40837:GSM40837
Iteration: 1
Family: Paramyxoviridae
12814 Respiratory syncytial virus s=0.626056 p=0.000000
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 65490 0.076349 0.050854
9629367_63 Respiratory syncytial virus Paramyxoviridae 65492 0.076351 0.047021
9629367_111 Respiratory syncytial virus Paramyxoviridae 65480 0.076337 0.044362
9629367_435_rc Respiratory syncytial virus Paramyxoviridae 65481 0.076338 0.038053
9629198_107 Human respiratory syncytial virus Paramyxoviridae 65486 0.076344 0.019220
11250 Human respiratory syncytial virus s=0.485472 p=0.000001
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 65487 0.076345 0.055394
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 57012 0.066465 0.053916
9629198_107 Human respiratory syncytial virus Paramyxoviridae 65486 0.076344 0.045780
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 65490 0.076349 0.037270
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 28894 0.033685 0.065924
11246 Bovine respiratory syncytial virus s=0.266304 p=0.000000
9631267_63 Bovine respiratory syncytial virus Paramyxoviridae 43813 0.051077 0.048894
9629367_63 Respiratory syncytial virus Paramyxoviridae 65492 0.076351 0.023265
9631267_463 Bovine respiratory syncytial virus Paramyxoviridae 29361 0.034229 0.049394
9631267_130_rc Bovine respiratory syncytial virus Paramyxoviridae 27320 0.031850 0.048894
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 65487 0.076345 0.019006
162145 Turkey rhinotracheitis virus s=0.059198 p=0.001705
22780169_372_rc Human metapneumovirus Paramyxoviridae 25980 0.030288 0.055561
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 57012 0.066465 0.008364
22780169_354_rc Human metapneumovirus Paramyxoviridae 5534 0.006452 0.057362
22780169_354 Human metapneumovirus Paramyxoviridae 2940 0.003427 0.057362
22780169_370 Human metapneumovirus Paramyxoviridae 2334 0.002721 0.050217
63330 Hendra virus s=0.006695 p=0.033746
9630557_521_rc Hendra virus Paramyxoviridae 3908 0.004556 0.059915
9630557_512_rc Hendra virus Paramyxoviridae 1504 0.001753 0.063396
9630557_523_rc Hendra virus Paramyxoviridae 191 0.000223 0.072672
9630557_521 Hendra virus Paramyxoviridae 52 0.000061 0.059915
9630557_523 Hendra virus Paramyxoviridae 28 0.000033 0.072672
Family: Picornaviridae
147712 Human rhinovirus B s=0.002916 p=0.580372
9626735_218 Human rhinovirus B Picornaviridae 1566 0.001826 0.014507
9626735_154 Human rhinovirus B Picornaviridae 1187 0.001384 0.018040
9626735_268 Human rhinovirus B Picornaviridae 893 0.001041 0.013652
9626735_268_rc Human rhinovirus B Picornaviridae 507 0.000591 0.013652
9626735_25_rc Human rhinovirus B Picornaviridae 157 0.000183 0.017261
Family: Adenoviridae
129951 Human adenovirus C s=0.001267 p=0.807632
9626158_823 Human adenovirus C Adenoviridae 521 0.000607 0.020900
9626158_754 Human adenovirus C Adenoviridae 152 0.000177 0.024229
9626158_868_rc Human adenovirus C Adenoviridae 109 0.000127 0.029082
9626158_863_rc Human adenovirus C Adenoviridae 98 0.000114 0.023602
9626158_868 Human adenovirus C Adenoviridae 78 0.000091 0.029082
129875 Human adenovirus A s=0.000464 p=0.923968
9626158_823 Human adenovirus C Adenoviridae 521 0.000607 0.003690
9626621_711 Human adenovirus A Adenoviridae 42 0.000049 0.044936
9632407_712 Human adenovirus D Adenoviridae 74 0.000086 0.019324
9626158_754 Human adenovirus C Adenoviridae 152 0.000177 0.008387
9626621_745 Human adenovirus A Adenoviridae 40 0.000047 0.031120
Iteration: 2
Family: Paramyxoviridae
63330 Hendra virus s=0.049973 p=0.000187
9630557_521_rc Hendra virus Paramyxoviridae 3908 0.037704 0.059915
9630557_512_rc Hendra virus Paramyxoviridae 1504 0.014510 0.063396
9630557_523_rc Hendra virus Paramyxoviridae 191 0.001843 0.072672
9630557_521 Hendra virus Paramyxoviridae 52 0.000502 0.059915
9630557_523 Hendra virus Paramyxoviridae 28 0.000270 0.072672
Family: Picornaviridae
147712 Human rhinovirus B s=0.021786 p=0.051469
9626735_218 Human rhinovirus B Picornaviridae 1566 0.015109 0.014507
9626735_154 Human rhinovirus B Picornaviridae 1187 0.011452 0.018040
9626735_268 Human rhinovirus B Picornaviridae 893 0.008616 0.013652
9626735_268_rc Human rhinovirus B Picornaviridae 507 0.004891 0.013652
9626735_25_rc Human rhinovirus B Picornaviridae 157 0.001515 0.017261
Family: Adenoviridae
129951 Human adenovirus C s=0.009467 p=0.239652
9626158_823 Human adenovirus C Adenoviridae 521 0.005027 0.020900
9626158_754 Human adenovirus C Adenoviridae 152 0.001466 0.024229
9626158_868_rc Human adenovirus C Adenoviridae 109 0.001052 0.029082
9626158_863_rc Human adenovirus C Adenoviridae 98 0.000945 0.023602
9626158_868 Human adenovirus C Adenoviridae 78 0.000753 0.029082
129875 Human adenovirus A s=0.003486 p=0.470218
9626158_823 Human adenovirus C Adenoviridae 521 0.005027 0.003690
9626621_711 Human adenovirus A Adenoviridae 42 0.000405 0.044936
9632407_712 Human adenovirus D Adenoviridae 74 0.000714 0.019324
9626158_754 Human adenovirus C Adenoviridae 152 0.001466 0.008387
9626621_745 Human adenovirus A Adenoviridae 40 0.000386 0.031120
GSM40838
EPREDICT : 2007-03-28 14:40:15 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40838
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40838:GSM40838
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.272741 p=0.000019
9626069_80 Human papillomavirus type 18 Papillomaviridae 17478 0.015297 0.030247
9626069_81 Human papillomavirus type 18 Papillomaviridae 13969 0.012226 0.031469
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 11980 0.010485 0.028059
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 9119 0.007981 0.036179
9626069_114_P70 Human papillomavirus type 18 Papillomaviridae 7608 0.006658 0.036179
10593 Human papillomavirus type 45 s=0.121925 p=0.000881
9627356_269 Human papillomavirus type 45 Papillomaviridae 8919 0.007806 0.030872
9626069_80 Human papillomavirus type 18 Papillomaviridae 17478 0.015297 0.006910
9627356_263 Human papillomavirus type 45 Papillomaviridae 3181 0.002784 0.036976
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 8576 0.007506 0.012905
9626069_81 Human papillomavirus type 18 Papillomaviridae 13969 0.012226 0.007905
10580 Human papillomavirus type 11 s=0.084262 p=0.000673
9627090_269 Human papillomavirus type 11 Papillomaviridae 8040 0.007037 0.037951
9627090_269_rc Human papillomavirus type 11 Papillomaviridae 4126 0.003611 0.037951
9633484_270 Human papillomavirus type 6 Papillomaviridae 8104 0.007093 0.016010
9626053_270 Human papillomavirus type 6b Papillomaviridae 7081 0.006197 0.015912
9628412_270 Human papillomavirus type 6a Papillomaviridae 5147 0.004505 0.016010
10600 Human papillomavirus type 6b s=0.064670 p=0.001104
9633484_270 Human papillomavirus type 6 Papillomaviridae 8104 0.007093 0.023735
9626053_270 Human papillomavirus type 6b Papillomaviridae 7081 0.006197 0.023639
9628412_270 Human papillomavirus type 6a Papillomaviridae 5147 0.004505 0.023735
9628412_270_rc Human papillomavirus type 6a Papillomaviridae 3065 0.002682 0.023735
9627118_263 Human papillomavirus type 33 Papillomaviridae 8308 0.007271 0.007028
37122 Human papillomavirus type 6a s=0.064544 p=0.001483
9633484_270 Human papillomavirus type 6 Papillomaviridae 8104 0.007093 0.023541
9626053_270 Human papillomavirus type 6b Papillomaviridae 7081 0.006197 0.023446
9628412_270 Human papillomavirus type 6a Papillomaviridae 5147 0.004505 0.023541
9628412_270_rc Human papillomavirus type 6a Papillomaviridae 3065 0.002682 0.023541
9627118_263 Human papillomavirus type 33 Papillomaviridae 8308 0.007271 0.006971
Family: Polyomaviridae
10633 Simian virus 40 s=0.038075 p=0.036060
9628421_25_rc Simian virus 40 Polyomaviridae 5062 0.004430 0.088121
9628421_25 Simian virus 40 Polyomaviridae 3483 0.003048 0.088121
9628642_23 JC virus Polyomaviridae 3704 0.003242 0.032633
9627180_29_rc BK polyomavirus Polyomaviridae 5021 0.004394 0.011924
9628421_23 Simian virus 40 Polyomaviridae 346 0.000303 0.082917
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.037267 p=0.045226
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 5754 0.005036 0.091863
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 4367 0.003822 0.091863
12084824_6098_rc Meleagrid herpesvirus 1 Herpesviridae 521 0.000456 0.091863
12084824_5205 Meleagrid herpesvirus 1 Herpesviridae 298 0.000261 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 1805 0.001580 0.006175
Family: Tymoviridae
107950 Chayote mosaic tymovirus s=0.025990 p=0.059437
11067737_200_rc Chayote mosaic tymovirus Tymoviridae 6445 0.005641 0.088710
11067737_131 Chayote mosaic tymovirus Tymoviridae 577 0.000505 0.085153
11067737_200 Chayote mosaic tymovirus Tymoviridae 173 0.000151 0.088710
11067737_182_rc Chayote mosaic tymovirus Tymoviridae 169 0.000148 0.086774
9629156_135_rc Kennedya yellow mosaic virus Tymoviridae 843 0.000738 0.009461
Family: NA
12450 Saccharomyces cerevisiae killer virus M1 s=0.018275 p=0.043837
VirusP70_10172 Saccharomyces cerevisiae killer viru unclassified vir 5019 0.004393 0.110698
VirusP70_10171 Saccharomyces cerevisiae killer viru unclassified vir 437 0.000382 0.110698
VirusP70_10165 Saccharomyces cerevisiae killer viru unclassified vir 278 0.000243 0.113087
VirusP70_10170 Saccharomyces cerevisiae killer viru unclassified vir 48 0.000042 0.111998
VirusP70_10166 Saccharomyces cerevisiae killer viru unclassified vir 41 0.000036 0.113087
228580 Beet severe curly top virus s=0.018114 p=0.101521
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 4326 0.003786 0.023383
20564177_88_rc Chino del tomate virus Geminiviridae 3030 0.002652 0.027956
9629636_87_rc Tomato mottle Taino virus Geminiviridae 1781 0.001559 0.012546
19352426_92 Ageratum enation virus Geminiviridae 429 0.000375 0.023284
10257473_26 Horseradish curly top virus Geminiviridae 183 0.000160 0.029163
120168 Bhendi yellow vein mosaic virus s=0.016592 p=0.181990
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 4326 0.003786 0.010511
20564177_88_rc Chino del tomate virus Geminiviridae 3030 0.002652 0.008437
9629636_87_rc Tomato mottle Taino virus Geminiviridae 1781 0.001559 0.004415
19073908_57 Bhendi yellow vein mosaic virus Geminiviridae 260 0.000228 0.015017
19352426_92 Ageratum enation virus Geminiviridae 429 0.000375 0.008538
31600 Indian cassava mosaic virus s=0.015867 p=0.199163
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 4326 0.003786 0.009061
20564177_88_rc Chino del tomate virus Geminiviridae 3030 0.002652 0.007992
9629636_87_rc Tomato mottle Taino virus Geminiviridae 1781 0.001559 0.003765
19352426_92 Ageratum enation virus Geminiviridae 429 0.000375 0.008927
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 309 0.000270 0.009158
222459 Cotton leaf curl Gezira virus s=0.015863 p=0.181455
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 4326 0.003786 0.011923
20564177_88_rc Chino del tomate virus Geminiviridae 3030 0.002652 0.007236
9629636_87_rc Tomato mottle Taino virus Geminiviridae 1781 0.001559 0.003879
19352426_92 Ageratum enation virus Geminiviridae 429 0.000375 0.008365
21911434_59_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 255 0.000223 0.013005
Family: Picornaviridae
46633 Human echovirus 1 s=0.015388 p=0.130244
9632987_14_rc Human coxsackievirus B2 Picornaviridae 2045 0.001790 0.011800
9629458_14_rc Human echovirus 12 Picornaviridae 2130 0.001864 0.009697
11072117_15_rc Human echovirus 5 Picornaviridae 1976 0.001729 0.010358
9632295_15_rc Human coxsackievirus B6 Picornaviridae 1461 0.001279 0.008780
21363125_21 Human echovirus 1 Picornaviridae 619 0.000542 0.018603
Iteration: 2
Family: Polyomaviridae
10633 Simian virus 40 s=0.041374 p=0.031946
9628421_25_rc Simian virus 40 Polyomaviridae 5062 0.005786 0.088121
9628421_25 Simian virus 40 Polyomaviridae 3483 0.003981 0.088121
9628642_23 JC virus Polyomaviridae 3704 0.004234 0.032633
9627180_29_rc BK polyomavirus Polyomaviridae 5021 0.005740 0.011924
9628421_23 Simian virus 40 Polyomaviridae 346 0.000396 0.082917
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.040507 p=0.040650
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 5754 0.006577 0.091863
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 4367 0.004992 0.091863
12084824_6098_rc Meleagrid herpesvirus 1 Herpesviridae 521 0.000596 0.091863
12084824_5205 Meleagrid herpesvirus 1 Herpesviridae 298 0.000341 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 1805 0.002063 0.006175
Family: Tymoviridae
107950 Chayote mosaic tymovirus s=0.028248 p=0.052991
11067737_200_rc Chayote mosaic tymovirus Tymoviridae 6445 0.007367 0.088710
11067737_131 Chayote mosaic tymovirus Tymoviridae 577 0.000660 0.085153
11067737_200 Chayote mosaic tymovirus Tymoviridae 173 0.000198 0.088710
11067737_182_rc Chayote mosaic tymovirus Tymoviridae 169 0.000193 0.086774
9629156_135_rc Kennedya yellow mosaic virus Tymoviridae 843 0.000964 0.009461
Family: NA
12450 Saccharomyces cerevisiae killer virus M1 s=0.019864 p=0.038987
VirusP70_10172 Saccharomyces cerevisiae killer viru unclassified vir 5019 0.005737 0.110698
VirusP70_10171 Saccharomyces cerevisiae killer viru unclassified vir 437 0.000500 0.110698
VirusP70_10165 Saccharomyces cerevisiae killer viru unclassified vir 278 0.000318 0.113087
VirusP70_10170 Saccharomyces cerevisiae killer viru unclassified vir 48 0.000055 0.111998
VirusP70_10166 Saccharomyces cerevisiae killer viru unclassified vir 41 0.000047 0.113087
228580 Beet severe curly top virus s=0.019678 p=0.091246
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 4326 0.004945 0.023383
20564177_88_rc Chino del tomate virus Geminiviridae 3030 0.003464 0.027956
9629636_87_rc Tomato mottle Taino virus Geminiviridae 1781 0.002036 0.012546
19352426_92 Ageratum enation virus Geminiviridae 429 0.000490 0.023284
10257473_26 Horseradish curly top virus Geminiviridae 183 0.000209 0.029163
120168 Bhendi yellow vein mosaic virus s=0.018017 p=0.166651
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 4326 0.004945 0.010511
20564177_88_rc Chino del tomate virus Geminiviridae 3030 0.003464 0.008437
9629636_87_rc Tomato mottle Taino virus Geminiviridae 1781 0.002036 0.004415
19073908_57 Bhendi yellow vein mosaic virus Geminiviridae 260 0.000297 0.015017
19352426_92 Ageratum enation virus Geminiviridae 429 0.000490 0.008538
31600 Indian cassava mosaic virus s=0.017231 p=0.182921
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 4326 0.004945 0.009061
20564177_88_rc Chino del tomate virus Geminiviridae 3030 0.003464 0.007992
9629636_87_rc Tomato mottle Taino virus Geminiviridae 1781 0.002036 0.003765
19352426_92 Ageratum enation virus Geminiviridae 429 0.000490 0.008927
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 309 0.000353 0.009158
222459 Cotton leaf curl Gezira virus s=0.017228 p=0.166053
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 4326 0.004945 0.011923
20564177_88_rc Chino del tomate virus Geminiviridae 3030 0.003464 0.007236
9629636_87_rc Tomato mottle Taino virus Geminiviridae 1781 0.002036 0.003879
19352426_92 Ageratum enation virus Geminiviridae 429 0.000490 0.008365
21911434_59_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 255 0.000291 0.013005
Family: Picornaviridae
46633 Human echovirus 1 s=0.016716 p=0.115145
9632987_14_rc Human coxsackievirus B2 Picornaviridae 2045 0.002338 0.011800
9629458_14_rc Human echovirus 12 Picornaviridae 2130 0.002435 0.009697
11072117_15_rc Human echovirus 5 Picornaviridae 1976 0.002259 0.010358
9632295_15_rc Human coxsackievirus B6 Picornaviridae 1461 0.001670 0.008780
21363125_21 Human echovirus 1 Picornaviridae 619 0.000708 0.018603
147711 Human rhinovirus A s=0.016565 p=0.288895
9627730_117 Human rhinovirus A Picornaviridae 1966 0.002247 0.014170
9627730_83 Human rhinovirus A Picornaviridae 955 0.001092 0.018605
9627730_16_rc Human rhinovirus A Picornaviridae 678 0.000775 0.018468
61098_13_rc Human rhinovirus sp. Picornaviridae 1096 0.001253 0.008314
453208_13_rc Human rhinovirus sp. Picornaviridae 1138 0.001301 0.007385
Family: Papillomaviridae
10618 Human papillomavirus type 52 s=0.015154 p=0.058027
9627370_239 Human papillomavirus type 52 Papillomaviridae 3376 0.003859 0.052341
9627370_239_rc Human papillomavirus type 52 Papillomaviridae 739 0.000845 0.052341
9627109_277 Human papillomavirus type 31 Papillomaviridae 178 0.000203 0.011792
9627349_1_rc Human papillomavirus type 40 Papillomaviridae 261 0.000298 0.006812
9627349_1 Human papillomavirus type 40 Papillomaviridae 215 0.000246 0.006812
GSM40839
EPREDICT : 2007-03-28 14:44:51 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40839
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40839:GSM40839
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.088636 p=0.000656
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 7627 0.021280 0.035142
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 5044 0.014073 0.036179
9626069_350_P70_rc Human papillomavirus type 18 Papillomaviridae 3520 0.009821 0.035901
9626069_291_P70_rc Human papillomavirus type 18 Papillomaviridae 2322 0.006478 0.033850
9626069_80 Human papillomavirus type 18 Papillomaviridae 1792 0.005000 0.030247
10593 Human papillomavirus type 45 s=0.033591 p=0.016914
9627356_269 Human papillomavirus type 45 Papillomaviridae 2630 0.007338 0.030872
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 5044 0.014073 0.009866
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 7627 0.021280 0.004794
9627356_263_rc Human papillomavirus type 45 Papillomaviridae 902 0.002517 0.036976
9626069_291_P70_rc Human papillomavirus type 18 Papillomaviridae 2322 0.006478 0.014299
10580 Human papillomavirus type 11 s=0.013401 p=0.045796
9627090_269_rc Human papillomavirus type 11 Papillomaviridae 941 0.002625 0.037951
9627090_269 Human papillomavirus type 11 Papillomaviridae 608 0.001696 0.037951
9628412_270 Human papillomavirus type 6a Papillomaviridae 1094 0.003052 0.016010
9627356_269 Human papillomavirus type 45 Papillomaviridae 2630 0.007338 0.003645
9627118_263_rc Human papillomavirus type 33 Papillomaviridae 1412 0.003940 0.005486
37115 Human papillomavirus type 59 s=0.011230 p=0.022259
9627962_252_rc Human papillomavirus type 59 Papillomaviridae 1562 0.004358 0.051293
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 1284 0.003582 0.030317
9627962_252 Human papillomavirus type 59 Papillomaviridae 713 0.001989 0.051293
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 959 0.002676 0.007122
9626069_81 Human papillomavirus type 18 Papillomaviridae 853 0.002380 0.007122
10600 Human papillomavirus type 6b s=0.010028 p=0.062610
9628412_270 Human papillomavirus type 6a Papillomaviridae 1094 0.003052 0.023735
9633484_270 Human papillomavirus type 6 Papillomaviridae 452 0.001261 0.023735
9627118_263_rc Human papillomavirus type 33 Papillomaviridae 1412 0.003940 0.007028
9626053_270 Human papillomavirus type 6b Papillomaviridae 361 0.001007 0.023639
9627118_263 Human papillomavirus type 33 Papillomaviridae 1183 0.003301 0.007028
Family: Herpesviridae
10298 Human herpesvirus 1 s=0.004614 p=0.553513
9629378_4860 Human herpesvirus 1 Herpesviridae 460 0.001283 0.020550
9629378_4861 Human herpesvirus 1 Herpesviridae 380 0.001060 0.019798
9629378_5995_rc Human herpesvirus 1 Herpesviridae 338 0.000943 0.020741
9629378_3819_P70 Human herpesvirus 1 Herpesviridae 133 0.000371 0.020550
9629378_697_P70_rc Human herpesvirus 1 Herpesviridae 158 0.000441 0.016929
Family: Polyomaviridae
10629 BK polyomavirus s=0.004511 p=0.355083
9627180_29_rc BK polyomavirus Polyomaviridae 841 0.002346 0.085882
9628421_25_rc Simian virus 40 Polyomaviridae 336 0.000937 0.023367
9628421_25 Simian virus 40 Polyomaviridae 293 0.000817 0.023367
9628642_25_rc JC virus Polyomaviridae 83 0.000232 0.043702
9628642_23 JC virus Polyomaviridae 68 0.000190 0.050265
Family: Myoviridae
33771 Halovirus HF2 s=0.004340 p=0.257246
18138397_829 Halovirus HF2 Myoviridae 388 0.001083 0.129830
18138397_831_rc Halovirus HF2 Myoviridae 276 0.000770 0.127303
18138397_831 Halovirus HF2 Myoviridae 173 0.000483 0.127303
18138397_3092_rc Halovirus HF2 Myoviridae 61 0.000170 0.131915
18138397_3105_rc Halovirus HF2 Myoviridae 71 0.000198 0.110952
Family: NA
222645 Halovirus HF1 s=0.004340 p=0.257246
18138397_829 Halovirus HF2 Myoviridae 388 0.001083 0.129830
18138397_831_rc Halovirus HF2 Myoviridae 276 0.000770 0.127303
18138397_831 Halovirus HF2 Myoviridae 173 0.000483 0.127303
18138397_3092_rc Halovirus HF2 Myoviridae 61 0.000170 0.131915
18138397_3105_rc Halovirus HF2 Myoviridae 71 0.000198 0.110952
Family: Nanoviridae
12585 Banana bunchy top virus s=0.004143 p=0.179852
19744927_1 Banana bunchy top virus Nanoviridae 293 0.000817 0.158600
19744936_2 Banana bunchy top virus Nanoviridae 197 0.000550 0.087114
19744929_1 Banana bunchy top virus Nanoviridae 185 0.000516 0.091085
19744934_1 Banana bunchy top virus Nanoviridae 136 0.000379 0.091085
19744927_1_rc Banana bunchy top virus Nanoviridae 61 0.000170 0.158600
Iteration: 2
Family: Herpesviridae
10298 Human herpesvirus 1 s=0.004653 p=0.551104
9629378_4860 Human herpesvirus 1 Herpesviridae 460 0.001507 0.020550
9629378_4861 Human herpesvirus 1 Herpesviridae 380 0.001245 0.019798
9629378_5995_rc Human herpesvirus 1 Herpesviridae 338 0.001108 0.020741
9629378_3819_P70 Human herpesvirus 1 Herpesviridae 133 0.000436 0.020550
9629378_697_P70_rc Human herpesvirus 1 Herpesviridae 158 0.000518 0.016929
Family: Polyomaviridae
10629 BK polyomavirus s=0.004548 p=0.353096
9627180_29_rc BK polyomavirus Polyomaviridae 841 0.002756 0.085882
9628421_25_rc Simian virus 40 Polyomaviridae 336 0.001101 0.023367
9628421_25 Simian virus 40 Polyomaviridae 293 0.000960 0.023367
9628642_25_rc JC virus Polyomaviridae 83 0.000272 0.043702
9628642_23 JC virus Polyomaviridae 68 0.000223 0.050265
Family: Myoviridae
33771 Halovirus HF2 s=0.004378 p=0.255285
18138397_829 Halovirus HF2 Myoviridae 388 0.001271 0.129830
18138397_831_rc Halovirus HF2 Myoviridae 276 0.000904 0.127303
18138397_831 Halovirus HF2 Myoviridae 173 0.000567 0.127303
18138397_3092_rc Halovirus HF2 Myoviridae 61 0.000200 0.131915
18138397_3105_rc Halovirus HF2 Myoviridae 71 0.000233 0.110952
Family: NA
222645 Halovirus HF1 s=0.004378 p=0.255285
18138397_829 Halovirus HF2 Myoviridae 388 0.001271 0.129830
18138397_831_rc Halovirus HF2 Myoviridae 276 0.000904 0.127303
18138397_831 Halovirus HF2 Myoviridae 173 0.000567 0.127303
18138397_3092_rc Halovirus HF2 Myoviridae 61 0.000200 0.131915
18138397_3105_rc Halovirus HF2 Myoviridae 71 0.000233 0.110952
Family: Nanoviridae
12585 Banana bunchy top virus s=0.004180 p=0.178205
19744927_1 Banana bunchy top virus Nanoviridae 293 0.000960 0.158600
19744936_2 Banana bunchy top virus Nanoviridae 197 0.000646 0.087114
19744929_1 Banana bunchy top virus Nanoviridae 185 0.000606 0.091085
19744934_1 Banana bunchy top virus Nanoviridae 136 0.000446 0.091085
19744927_1_rc Banana bunchy top virus Nanoviridae 61 0.000200 0.158600
Family: Retroviridae
11867 Avian myelocytomatosis virus s=0.003939 p=0.367110
9629900_6 Avian myelocytomatosis virus Retroviridae 277 0.000908 0.021352
9626156_9 Avian sarcoma virus Y73 Retroviridae 230 0.000754 0.020231
9629900_12 Avian myelocytomatosis virus Retroviridae 181 0.000593 0.020195
9629900_6_rc Avian myelocytomatosis virus Retroviridae 170 0.000557 0.021352
9626152_19_rc Avian carcinoma virus Retroviridae 138 0.000452 0.021905
GSM40840
EPREDICT : 2007-03-28 14:47:30 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40840
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40840:GSM40840
Iteration: 1
Family: Orthomyxoviridae
11320 Influenza A virus s=0.265300 p=0.000002
8486129_20_rc Influenza A virus Orthomyxoviridae 47760 0.129184 0.073178
8486129_29_rc Influenza A virus Orthomyxoviridae 23539 0.063670 0.061521
8486129_38 Influenza A virus Orthomyxoviridae 19588 0.052983 0.066505
8486129_2_rc Influenza A virus Orthomyxoviridae 10444 0.028250 0.073315
8486129_29 Influenza A virus Orthomyxoviridae 4752 0.012854 0.061521
183764 Influenza A virus s=0.249747 p=0.000002
8486129_20_rc Influenza A virus Orthomyxoviridae 47760 0.129184 0.061872
8486129_29_rc Influenza A virus Orthomyxoviridae 23539 0.063670 0.063151
8486129_38 Influenza A virus Orthomyxoviridae 19588 0.052983 0.068267
8486129_2_rc Influenza A virus Orthomyxoviridae 10444 0.028250 0.075257
8486129_29 Influenza A virus Orthomyxoviridae 4752 0.012854 0.063151
130760 Influenza A virus s=0.062427 p=0.000601
8486129_29_rc Influenza A virus Orthomyxoviridae 23539 0.063670 0.060575
8486129_2_rc Influenza A virus Orthomyxoviridae 10444 0.028250 0.070929
8486129_29 Influenza A virus Orthomyxoviridae 4752 0.012854 0.060575
8486129_59_rc Influenza A virus Orthomyxoviridae 456 0.001233 0.161429
8486129_59 Influenza A virus Orthomyxoviridae 321 0.000868 0.161429
Family: Flaviviridae
11053 Dengue virus s=0.001968 p=0.628539
9626685_344_rc Dengue virus type 1 Flaviviridae 175 0.000473 0.058148
9626685_357_rc Dengue virus type 1 Flaviviridae 128 0.000346 0.054720
12084822_421_rc Dengue virus type 4 Flaviviridae 186 0.000503 0.028950
9626685_367_rc Dengue virus type 1 Flaviviridae 82 0.000222 0.054720
9626685_424_rc Dengue virus type 1 Flaviviridae 57 0.000154 0.063192
11082 West Nile virus s=0.001817 p=0.584773
11528013_362_rc West Nile virus Flaviviridae 295 0.000798 0.060149
11528013_433_rc West Nile virus Flaviviridae 71 0.000192 0.058020
11528013_233_rc West Nile virus Flaviviridae 36 0.000097 0.056038
11528013_218_rc West Nile virus Flaviviridae 26 0.000070 0.064405
20260779_361_rc Powassan virus Flaviviridae 181 0.000490 0.008975
11060 Dengue virus s=0.001691 p=0.553843
9626681_365_rc Dengue virus type 2 Flaviviridae 151 0.000408 0.069600
12084822_421_rc Dengue virus type 4 Flaviviridae 186 0.000503 0.051897
9626681_357_rc Dengue virus type 2 Flaviviridae 108 0.000292 0.060244
11528013_362_rc West Nile virus Flaviviridae 295 0.000798 0.009127
20260779_361_rc Powassan virus Flaviviridae 181 0.000490 0.009745
Family: Picornaviridae
12090 Human enterovirus D s=0.001632 p=0.760299
9626436_21 Human enterovirus 70 Picornaviridae 150 0.000406 0.031978
9626433_21 Human enterovirus C Picornaviridae 181 0.000490 0.016708
9626436_232_rc Human enterovirus 70 Picornaviridae 102 0.000276 0.029258
9629634_21 Porcine enterovirus B Picornaviridae 101 0.000273 0.014212
12408699_21 Poliovirus Picornaviridae 69 0.000187 0.018381
Family: Retroviridae
11741 Visna virus s=0.001513 p=0.495018
9626546_165_rc Visna virus Retroviridae 226 0.000611 0.061186
9626546_89_rc Visna virus Retroviridae 139 0.000376 0.058869
9626219_8_rc Bovine immunodeficiency virus Retroviridae 592 0.001601 0.009084
9626546_165 Visna virus Retroviridae 32 0.000087 0.061186
9626546_67_rc Visna virus Retroviridae 23 0.000062 0.061063
Family: Hepadnaviridae
113194 Orangutan hepadnavirus s=0.001465 p=0.717580
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000519 0.023573
9634216_16 Orangutan hepadnavirus Hepadnaviridae 110 0.000298 0.029097
9630370_29 Woolly monkey hepatitis B Virus Hepadnaviridae 199 0.000538 0.014113
21326584_16 Hepatitis B virus Hepadnaviridae 98 0.000265 0.024385
21326584_14_rc Hepatitis B virus Hepadnaviridae 76 0.000206 0.023573
10407 Hepatitis B virus s=0.001423 p=0.716857
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000519 0.029656
21326584_16 Hepatitis B virus Hepadnaviridae 98 0.000265 0.026141
9634216_16 Orangutan hepadnavirus Hepadnaviridae 110 0.000298 0.023038
21326584_14_rc Hepatitis B virus Hepadnaviridae 76 0.000206 0.029656
9630370_29 Woolly monkey hepatitis B Virus Hepadnaviridae 199 0.000538 0.010560
68416 Woolly monkey hepatitis B Virus s=0.001422 p=0.711405
9630370_29 Woolly monkey hepatitis B Virus Hepadnaviridae 199 0.000538 0.037593
9630370_16 Woolly monkey hepatitis B Virus Hepadnaviridae 75 0.000203 0.034987
9634216_16 Orangutan hepadnavirus Hepadnaviridae 110 0.000298 0.019617
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000519 0.011206
21326584_16 Hepatitis B virus Hepadnaviridae 98 0.000265 0.015430
10406 Ground squirrel hepatitis virus s=0.001119 p=0.709872
9626714_77 Ground squirrel hepatitis virus Hepadnaviridae 162 0.000438 0.038890
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 33 0.000089 0.048243
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000519 0.007326
9626714_70_rc Ground squirrel hepatitis virus Hepadnaviridae 39 0.000105 0.034697
9626714_77_rc Ground squirrel hepatitis virus Hepadnaviridae 24 0.000065 0.038890
35269 Woodchuck hepatitis B virus s=0.001069 p=0.733552
9626714_77 Ground squirrel hepatitis virus Hepadnaviridae 162 0.000438 0.023158
9634216_16 Orangutan hepadnavirus Hepadnaviridae 110 0.000298 0.015050
21326584_16 Hepatitis B virus Hepadnaviridae 98 0.000265 0.016707
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 33 0.000089 0.042473
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000519 0.006301
Family: Parvoviridae
35340 Mouse parvovirus 1 s=0.001060 p=0.699398
9626993_67_rc Mice minute virus Parvoviridae 112 0.000303 0.033781
9627947_99_rc Mouse parvovirus 1 Parvoviridae 71 0.000192 0.047251
9626078_99_rc Parvovirus H1 Parvoviridae 94 0.000254 0.020460
9626078_47_rc Parvovirus H1 Parvoviridae 37 0.000100 0.040899
9627947_47_rc Mouse parvovirus 1 Parvoviridae 32 0.000087 0.040429
Iteration: 2
Family: Flaviviridae
11053 Dengue virus s=0.002319 p=0.583903
9626685_344_rc Dengue virus type 1 Flaviviridae 175 0.000667 0.058148
9626685_357_rc Dengue virus type 1 Flaviviridae 128 0.000488 0.054720
12084822_421_rc Dengue virus type 4 Flaviviridae 186 0.000709 0.028950
9626685_367_rc Dengue virus type 1 Flaviviridae 82 0.000313 0.054720
9626685_424_rc Dengue virus type 1 Flaviviridae 57 0.000217 0.063192
11082 West Nile virus s=0.002143 p=0.535625
11528013_362_rc West Nile virus Flaviviridae 295 0.001125 0.060149
11528013_433_rc West Nile virus Flaviviridae 71 0.000271 0.058020
11528013_233_rc West Nile virus Flaviviridae 36 0.000137 0.056038
11528013_218_rc West Nile virus Flaviviridae 26 0.000099 0.064405
20260779_361_rc Powassan virus Flaviviridae 181 0.000690 0.008975
11060 Dengue virus s=0.001996 p=0.501623
9626681_365_rc Dengue virus type 2 Flaviviridae 151 0.000576 0.069600
12084822_421_rc Dengue virus type 4 Flaviviridae 186 0.000709 0.051897
9626681_357_rc Dengue virus type 2 Flaviviridae 108 0.000412 0.060244
11528013_362_rc West Nile virus Flaviviridae 295 0.001125 0.009127
20260779_361_rc Powassan virus Flaviviridae 181 0.000690 0.009745
Family: Picornaviridae
12090 Human enterovirus D s=0.001922 p=0.711473
9626436_21 Human enterovirus 70 Picornaviridae 150 0.000572 0.031978
9626433_21 Human enterovirus C Picornaviridae 181 0.000690 0.016708
9626436_232_rc Human enterovirus 70 Picornaviridae 102 0.000389 0.029258
9629634_21 Porcine enterovirus B Picornaviridae 101 0.000385 0.014212
12408699_21 Poliovirus Picornaviridae 69 0.000263 0.018381
Family: Retroviridae
11741 Visna virus s=0.001784 p=0.436403
9626546_165_rc Visna virus Retroviridae 226 0.000862 0.061186
9626546_89_rc Visna virus Retroviridae 139 0.000530 0.058869
9626219_8_rc Bovine immunodeficiency virus Retroviridae 592 0.002257 0.009084
9626546_165 Visna virus Retroviridae 32 0.000122 0.061186
9626546_67_rc Visna virus Retroviridae 23 0.000088 0.061063
Family: Hepadnaviridae
113194 Orangutan hepadnavirus s=0.001726 p=0.675323
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000732 0.023573
9634216_16 Orangutan hepadnavirus Hepadnaviridae 110 0.000419 0.029097
9630370_29 Woolly monkey hepatitis B Virus Hepadnaviridae 199 0.000759 0.014113
21326584_16 Hepatitis B virus Hepadnaviridae 98 0.000374 0.024385
21326584_14_rc Hepatitis B virus Hepadnaviridae 76 0.000290 0.023573
68416 Woolly monkey hepatitis B Virus s=0.001678 p=0.668378
9630370_29 Woolly monkey hepatitis B Virus Hepadnaviridae 199 0.000759 0.037593
9630370_16 Woolly monkey hepatitis B Virus Hepadnaviridae 75 0.000286 0.034987
9634216_16 Orangutan hepadnavirus Hepadnaviridae 110 0.000419 0.019617
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000732 0.011206
21326584_16 Hepatitis B virus Hepadnaviridae 98 0.000374 0.015430
10407 Hepatitis B virus s=0.001677 p=0.674821
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000732 0.029656
21326584_16 Hepatitis B virus Hepadnaviridae 98 0.000374 0.026141
9634216_16 Orangutan hepadnavirus Hepadnaviridae 110 0.000419 0.023038
21326584_14_rc Hepatitis B virus Hepadnaviridae 76 0.000290 0.029656
9630370_29 Woolly monkey hepatitis B Virus Hepadnaviridae 199 0.000759 0.010560
10406 Ground squirrel hepatitis virus s=0.001319 p=0.667240
9626714_77 Ground squirrel hepatitis virus Hepadnaviridae 162 0.000618 0.038890
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 33 0.000126 0.048243
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000732 0.007326
9626714_70_rc Ground squirrel hepatitis virus Hepadnaviridae 39 0.000149 0.034697
9626714_77_rc Ground squirrel hepatitis virus Hepadnaviridae 24 0.000091 0.038890
35269 Woodchuck hepatitis B virus s=0.001260 p=0.692431
9626714_77 Ground squirrel hepatitis virus Hepadnaviridae 162 0.000618 0.023158
9634216_16 Orangutan hepadnavirus Hepadnaviridae 110 0.000419 0.015050
21326584_16 Hepatitis B virus Hepadnaviridae 98 0.000374 0.016707
9626714_24_rc Ground squirrel hepatitis virus Hepadnaviridae 33 0.000126 0.042473
21326584_14 Hepatitis B virus Hepadnaviridae 192 0.000732 0.006301
Family: Parvoviridae
35340 Mouse parvovirus 1 s=0.001250 p=0.654563
9626993_67_rc Mice minute virus Parvoviridae 112 0.000427 0.033781
9627947_99_rc Mouse parvovirus 1 Parvoviridae 71 0.000271 0.047251
9626078_99_rc Parvovirus H1 Parvoviridae 94 0.000358 0.020460
9626078_47_rc Parvovirus H1 Parvoviridae 37 0.000141 0.040899
9627947_47_rc Mouse parvovirus 1 Parvoviridae 32 0.000122 0.040429
10799 Parvovirus H1 s=0.001174 p=0.647448
9626078_99_rc Parvovirus H1 Parvoviridae 94 0.000358 0.048825
9626993_67_rc Mice minute virus Parvoviridae 112 0.000427 0.021584
9626078_47_rc Parvovirus H1 Parvoviridae 37 0.000141 0.042111
9627947_99_rc Mouse parvovirus 1 Parvoviridae 71 0.000271 0.018842
9627947_47_rc Mouse parvovirus 1 Parvoviridae 32 0.000122 0.041627
10794 Mice minute virus s=0.001155 p=0.632278
9626993_67_rc Mice minute virus Parvoviridae 112 0.000427 0.038285
9627947_99_rc Mouse parvovirus 1 Parvoviridae 71 0.000271 0.033262
9626078_99_rc Parvovirus H1 Parvoviridae 94 0.000358 0.016451
9626078_47_rc Parvovirus H1 Parvoviridae 37 0.000141 0.034897
9627947_47_rc Mouse parvovirus 1 Parvoviridae 32 0.000122 0.034467
GSM40841
EPREDICT : 2007-03-28 14:49:25 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40841
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40841:GSM40841
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.429993 p=0.000004
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 21865 0.032166 0.035142
9626069_350_P70_rc Human papillomavirus type 18 Papillomaviridae 16449 0.024198 0.035901
9626069_269 Human papillomavirus type 18 Papillomaviridae 16518 0.024300 0.028366
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 11658 0.017150 0.036179
9626069_187_P70 Human papillomavirus type 18 Papillomaviridae 11787 0.017340 0.035142
10593 Human papillomavirus type 45 s=0.146852 p=0.000533
9627356_269 Human papillomavirus type 45 Papillomaviridae 11019 0.016210 0.030872
9626069_269 Human papillomavirus type 18 Papillomaviridae 16518 0.024300 0.012905
9627356_269_rc Human papillomavirus type 45 Papillomaviridae 5070 0.007458 0.030872
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 10694 0.015732 0.012905
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 11658 0.017150 0.009866
37115 Human papillomavirus type 59 s=0.052828 p=0.000507
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 13040 0.019183 0.030317
9627962_252_rc Human papillomavirus type 59 Papillomaviridae 3685 0.005421 0.051293
9627962_252 Human papillomavirus type 59 Papillomaviridae 3149 0.004632 0.051293
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 13042 0.019186 0.007122
9626069_81 Human papillomavirus type 18 Papillomaviridae 12771 0.018787 0.007122
Family: NA
207697 Croton yellow vein mosaic virus s=0.040696 p=0.058654
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 3509 0.005162 0.007716
16507262_57 Cotton leaf curl virus Geminiviridae 3007 0.004424 0.007085
20340272_57 Tobacco curly shoot virus Geminiviridae 1894 0.002786 0.009546
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1835 0.002699 0.009546
9631562_58 Tomato yellow leaf curl virus - Isra Geminiviridae 1614 0.002374 0.009817
161378 Sri Lankan cassava mosaic virus s=0.039205 p=0.051743
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 3509 0.005162 0.018005
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 1678 0.002469 0.018005
16507262_57 Cotton leaf curl virus Geminiviridae 3007 0.004424 0.007003
9630671_66 Indian cassava mosaic virus Geminiviridae 1108 0.001630 0.017579
9629636_52 Tomato mottle Taino virus Geminiviridae 2289 0.003367 0.007915
77647 Cotton leaf crumple geminivirus s=0.036225 p=0.053071
9629636_52 Tomato mottle Taino virus Geminiviridae 2289 0.003367 0.010977
10518470_58 Tomato rugose mosaic virus Geminiviridae 1780 0.002619 0.010053
16507262_57 Cotton leaf curl virus Geminiviridae 3007 0.004424 0.005461
20340272_57 Tobacco curly shoot virus Geminiviridae 1894 0.002786 0.008030
21594412_57 Tomato yellow leaf curl China virus Geminiviridae 2112 0.003107 0.007081
208177 Tomato leaf curl Vietnam virus s=0.036172 p=0.083038
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 3509 0.005162 0.005784
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1561 0.002296 0.010691
10518470_58 Tomato rugose mosaic virus Geminiviridae 1780 0.002619 0.008964
9629636_52 Tomato mottle Taino virus Geminiviridae 2289 0.003367 0.006457
9631562_58 Tomato yellow leaf curl virus - Isra Geminiviridae 1614 0.002374 0.008255
53260 Papaya leaf curl virus s=0.034725 p=0.059115
16507262_57 Cotton leaf curl virus Geminiviridae 3007 0.004424 0.006657
20340272_57 Tobacco curly shoot virus Geminiviridae 1894 0.002786 0.009028
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1835 0.002699 0.009028
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 3509 0.005162 0.004296
9631562_58 Tomato yellow leaf curl virus - Isra Geminiviridae 1614 0.002374 0.009289
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.020277 p=0.070715
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 2488 0.003660 0.228244
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 805 0.001184 0.255549
16507983_164 Human endogenous retrovirus K115 Retroviridae 655 0.000964 0.255549
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 344 0.000506 0.130329
16507983_187 Human endogenous retrovirus K115 Retroviridae 263 0.000387 0.130329
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.006164 p=0.270896
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 971 0.001428 0.091863
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 849 0.001249 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 480 0.000706 0.006175
12084824_1384 Meleagrid herpesvirus 1 Herpesviridae 17 0.000025 0.076908
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 101 0.000149 0.006175
35250 Gallid herpesvirus 3 s=0.005015 p=0.300476
10834856_6354 Gallid herpesvirus 3 Herpesviridae 1656 0.002436 0.062135
10834856_5544 Gallid herpesvirus 3 Herpesviridae 71 0.000104 0.062135
EBV_4323_rc Human herpesvirus 4 Herpesviridae 639 0.000940 0.003955
10834856_5542 Gallid herpesvirus 3 Herpesviridae 33 0.000049 0.063592
9625578_4323_rc Human herpesvirus 4 Herpesviridae 469 0.000690 0.003955
10298 Human herpesvirus 1 s=0.004184 p=0.581345
9629378_193 Human herpesvirus 1 Herpesviridae 859 0.001264 0.019798
9629378_4861 Human herpesvirus 1 Herpesviridae 767 0.001128 0.019798
9629378_194 Human herpesvirus 1 Herpesviridae 235 0.000346 0.020550
9629378_4860 Human herpesvirus 1 Herpesviridae 147 0.000216 0.020550
9629378_1192 Human herpesvirus 1 Herpesviridae 77 0.000113 0.019212
10335 Human herpesvirus 3 s=0.003561 p=0.220162
9625875_752_rc Human herpesvirus 3 Herpesviridae 1888 0.002777 0.026694
9625875_4257_rc Human herpesvirus 3 Herpesviridae 173 0.000254 0.037353
9625875_3092_rc Human herpesvirus 3 Herpesviridae 70 0.000103 0.024748
9625875_2135 Human herpesvirus 3 Herpesviridae 36 0.000053 0.027999
9625875_4930 Human herpesvirus 3 Herpesviridae 27 0.000040 0.035844
10376 Human herpesvirus 4 s=0.003501 p=0.551206
EBV_4323_rc Human herpesvirus 4 Herpesviridae 639 0.000940 0.016287
9625578_4323_rc Human herpesvirus 4 Herpesviridae 469 0.000690 0.016287
EBV_4541 Human herpesvirus 4 Herpesviridae 181 0.000266 0.017003
EBV_4322 Human herpesvirus 4 Herpesviridae 195 0.000287 0.015747
EB60_4541 Human herpesvirus 4 Herpesviridae 155 0.000228 0.012577
Family: Iridoviridae
160691 Rana tigrina ranavirus s=0.003092 p=0.322015
18767698_3529 Rana tigrina ranavirus Iridoviridae 649 0.000955 0.095284
18767698_3529_rc Rana tigrina ranavirus Iridoviridae 262 0.000385 0.095284
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 480 0.000706 0.007615
18767698_1035_rc Rana tigrina ranavirus Iridoviridae 37 0.000054 0.095619
18767698_1037_rc Rana tigrina ranavirus Iridoviridae 29 0.000043 0.092625
Family: Siphoviridae
196242 Phage phi 4795 s=0.002639 p=0.449639
20065797_1965 Stx2 converting bacteriophage I Siphoviridae 380 0.000559 0.032903
9632466_695 Bacteriophage 933W Siphoviridae 247 0.000363 0.035568
9632466_695_rc Bacteriophage 933W Siphoviridae 90 0.000132 0.035568
9634155_1333 Bacteriophage HK97 Siphoviridae 125 0.000184 0.024022
20065797_1965_rc Stx2 converting bacteriophage I Siphoviridae 71 0.000104 0.032903
Iteration: 2
Family: NA
207697 Croton yellow vein mosaic virus s=0.046651 p=0.048275
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 3509 0.008746 0.007716
16507262_57 Cotton leaf curl virus Geminiviridae 3007 0.007495 0.007085
20340272_57 Tobacco curly shoot virus Geminiviridae 1894 0.004721 0.009546
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1835 0.004574 0.009546
9631562_58 Tomato yellow leaf curl virus - Isra Geminiviridae 1614 0.004023 0.009817
161378 Sri Lankan cassava mosaic virus s=0.044941 p=0.042454
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 3509 0.008746 0.018005
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 1678 0.004182 0.018005
16507262_57 Cotton leaf curl virus Geminiviridae 3007 0.007495 0.007003
9630671_66 Indian cassava mosaic virus Geminiviridae 1108 0.002762 0.017579
9629636_52 Tomato mottle Taino virus Geminiviridae 2289 0.005705 0.007915
77647 Cotton leaf crumple geminivirus s=0.041526 p=0.043595
9629636_52 Tomato mottle Taino virus Geminiviridae 2289 0.005705 0.010977
10518470_58 Tomato rugose mosaic virus Geminiviridae 1780 0.004437 0.010053
16507262_57 Cotton leaf curl virus Geminiviridae 3007 0.007495 0.005461
20340272_57 Tobacco curly shoot virus Geminiviridae 1894 0.004721 0.008030
21594412_57 Tomato yellow leaf curl China virus Geminiviridae 2112 0.005264 0.007081
208177 Tomato leaf curl Vietnam virus s=0.041463 p=0.069319
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 3509 0.008746 0.005784
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1561 0.003891 0.010691
10518470_58 Tomato rugose mosaic virus Geminiviridae 1780 0.004437 0.008964
9629636_52 Tomato mottle Taino virus Geminiviridae 2289 0.005705 0.006457
9631562_58 Tomato yellow leaf curl virus - Isra Geminiviridae 1614 0.004023 0.008255
53260 Papaya leaf curl virus s=0.039805 p=0.048683
16507262_57 Cotton leaf curl virus Geminiviridae 3007 0.007495 0.006657
20340272_57 Tobacco curly shoot virus Geminiviridae 1894 0.004721 0.009028
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1835 0.004574 0.009028
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 3509 0.008746 0.004296
9631562_58 Tomato yellow leaf curl virus - Isra Geminiviridae 1614 0.004023 0.009289
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.023243 p=0.061597
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 2488 0.006201 0.228244
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 805 0.002006 0.255549
16507983_164 Human endogenous retrovirus K115 Retroviridae 655 0.001633 0.255549
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 344 0.000857 0.130329
16507983_187 Human endogenous retrovirus K115 Retroviridae 263 0.000656 0.130329
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.007065 p=0.244403
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 971 0.002420 0.091863
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 849 0.002116 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 480 0.001196 0.006175
12084824_1384 Meleagrid herpesvirus 1 Herpesviridae 17 0.000042 0.076908
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 101 0.000252 0.006175
35250 Gallid herpesvirus 3 s=0.005748 p=0.267998
10834856_6354 Gallid herpesvirus 3 Herpesviridae 1656 0.004128 0.062135
10834856_5544 Gallid herpesvirus 3 Herpesviridae 71 0.000177 0.062135
EBV_4323_rc Human herpesvirus 4 Herpesviridae 639 0.001593 0.003955
10834856_5542 Gallid herpesvirus 3 Herpesviridae 33 0.000082 0.063592
9625578_4323_rc Human herpesvirus 4 Herpesviridae 469 0.001169 0.003955
10298 Human herpesvirus 1 s=0.004797 p=0.542365
9629378_193 Human herpesvirus 1 Herpesviridae 859 0.002141 0.019798
9629378_4861 Human herpesvirus 1 Herpesviridae 767 0.001912 0.019798
9629378_194 Human herpesvirus 1 Herpesviridae 235 0.000586 0.020550
9629378_4860 Human herpesvirus 1 Herpesviridae 147 0.000366 0.020550
9629378_1192 Human herpesvirus 1 Herpesviridae 77 0.000192 0.019212
10335 Human herpesvirus 3 s=0.004080 p=0.189108
9625875_752_rc Human herpesvirus 3 Herpesviridae 1888 0.004706 0.026694
9625875_4257_rc Human herpesvirus 3 Herpesviridae 173 0.000431 0.037353
9625875_3092_rc Human herpesvirus 3 Herpesviridae 70 0.000174 0.024748
9625875_2135 Human herpesvirus 3 Herpesviridae 36 0.000090 0.027999
9625875_4930 Human herpesvirus 3 Herpesviridae 27 0.000067 0.035844
10376 Human herpesvirus 4 s=0.004012 p=0.507051
EBV_4323_rc Human herpesvirus 4 Herpesviridae 639 0.001593 0.016287
9625578_4323_rc Human herpesvirus 4 Herpesviridae 469 0.001169 0.016287
EBV_4541 Human herpesvirus 4 Herpesviridae 181 0.000451 0.017003
EBV_4322 Human herpesvirus 4 Herpesviridae 195 0.000486 0.015747
EB60_4541 Human herpesvirus 4 Herpesviridae 155 0.000386 0.012577
Family: Iridoviridae
160691 Rana tigrina ranavirus s=0.003544 p=0.287807
18767698_3529 Rana tigrina ranavirus Iridoviridae 649 0.001618 0.095284
18767698_3529_rc Rana tigrina ranavirus Iridoviridae 262 0.000653 0.095284
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 480 0.001196 0.007615
18767698_1035_rc Rana tigrina ranavirus Iridoviridae 37 0.000092 0.095619
18767698_1037_rc Rana tigrina ranavirus Iridoviridae 29 0.000072 0.092625
Family: Siphoviridae
196242 Phage phi 4795 s=0.003028 p=0.407258
20065797_1965 Stx2 converting bacteriophage I Siphoviridae 380 0.000947 0.032903
9632466_695 Bacteriophage 933W Siphoviridae 247 0.000616 0.035568
9632466_695_rc Bacteriophage 933W Siphoviridae 90 0.000224 0.035568
9634155_1333 Bacteriophage HK97 Siphoviridae 125 0.000312 0.024022
20065797_1965_rc Stx2 converting bacteriophage I Siphoviridae 71 0.000177 0.032903
88870 Mycobacteriophage TM4 s=0.002847 p=0.139378
18496886_2108_rc Mycobacteriophage TM4 Siphoviridae 652 0.001625 0.091737
18496886_2108 Mycobacteriophage TM4 Siphoviridae 161 0.000401 0.091737
18496886_1837 Mycobacteriophage TM4 Siphoviridae 23 0.000057 0.105532
18496886_1118 Mycobacteriophage TM4 Siphoviridae 22 0.000055 0.105222
18496886_1144 Mycobacteriophage TM4 Siphoviridae 13 0.000032 0.095538
10730 Bacteriophage 933W s=0.002560 p=0.449788
20065797_1965 Stx2 converting bacteriophage I Siphoviridae 380 0.000947 0.020294
9632466_695 Bacteriophage 933W Siphoviridae 247 0.000616 0.021938
9632466_695_rc Bacteriophage 933W Siphoviridae 90 0.000224 0.021938
9634155_1333 Bacteriophage HK97 Siphoviridae 125 0.000312 0.014816
20065797_1965_rc Stx2 converting bacteriophage I Siphoviridae 71 0.000177 0.020294
180816 Stx2 converting bacteriophage I s=0.002491 p=0.459017
20065797_1965 Stx2 converting bacteriophage I Siphoviridae 380 0.000947 0.019181
9632466_695 Bacteriophage 933W Siphoviridae 247 0.000616 0.020734
9632466_695_rc Bacteriophage 933W Siphoviridae 90 0.000224 0.020734
9634155_1333 Bacteriophage HK97 Siphoviridae 125 0.000312 0.014004
20065797_1965_rc Stx2 converting bacteriophage I Siphoviridae 71 0.000177 0.019181
194948 Stx1 converting bacteriophage s=0.002279 p=0.501862
20065797_1965 Stx2 converting bacteriophage I Siphoviridae 380 0.000947 0.014223
9632466_695 Bacteriophage 933W Siphoviridae 247 0.000616 0.015793
9634155_1333 Bacteriophage HK97 Siphoviridae 125 0.000312 0.018491
13559823_523_rc Bacteriophage HK620 Siphoviridae 73 0.000182 0.021117
9632466_695_rc Bacteriophage 933W Siphoviridae 90 0.000224 0.015793
Family: Podoviridae
173443 Salmonella typhimurium bacteriophage ST6 s=0.002051 p=0.513945
20065797_1965 Stx2 converting bacteriophage I Siphoviridae 380 0.000947 0.014269
9632466_695 Bacteriophage 933W Siphoviridae 247 0.000616 0.014393
9634155_1333 Bacteriophage HK97 Siphoviridae 125 0.000312 0.016933
9632466_620 Bacteriophage 933W Siphoviridae 57 0.000142 0.027361
13559823_493 Bacteriophage HK620 Siphoviridae 64 0.000160 0.022270
GSM40842
EPREDICT : 2007-03-28 14:52:08 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40842
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40842:GSM40842
Iteration: 1
Family: Paramyxoviridae
11250 Human respiratory syncytial virus s=0.488577 p=0.000001
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 27210 0.086045 0.055394
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 11776 0.037239 0.065924
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 18544 0.058641 0.037270
9629198_133 Human respiratory syncytial virus Paramyxoviridae 6907 0.021842 0.055394
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 6251 0.019767 0.053916
12814 Respiratory syncytial virus s=0.311376 p=0.000001
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 18544 0.058641 0.050854
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 11776 0.037239 0.036764
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 27210 0.086045 0.010130
9629367_130 Respiratory syncytial virus Paramyxoviridae 3996 0.012636 0.050854
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 3602 0.011390 0.047021
11246 Bovine respiratory syncytial virus s=0.172105 p=0.000003
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 27210 0.086045 0.019006
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 18544 0.058641 0.010961
9631267_130_rc Bovine respiratory syncytial virus Paramyxoviridae 3717 0.011754 0.048894
9629198_133 Human respiratory syncytial virus Paramyxoviridae 6907 0.021842 0.019006
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 11776 0.037239 0.007664
162145 Turkey rhinotracheitis virus s=0.026342 p=0.011038
22780169_372 Human metapneumovirus Paramyxoviridae 2383 0.007536 0.055561
22780169_354 Human metapneumovirus Paramyxoviridae 1247 0.003943 0.057362
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 6251 0.019767 0.008364
9629198_434 Human respiratory syncytial virus Paramyxoviridae 3702 0.011707 0.008364
22780169_372_rc Human metapneumovirus Paramyxoviridae 288 0.000911 0.055561
63330 Hendra virus s=0.012411 p=0.009150
9630557_521_rc Hendra virus Paramyxoviridae 1378 0.004358 0.059915
9630557_521 Hendra virus Paramyxoviridae 638 0.002018 0.059915
9630557_512_rc Hendra virus Paramyxoviridae 478 0.001512 0.063396
9630557_523_rc Hendra virus Paramyxoviridae 98 0.000310 0.072672
9630557_566 Hendra virus Paramyxoviridae 87 0.000275 0.073839
Family: NA
9606 Homo sapiens s=0.004501 p=0.271943
11228730_388_rc Human endogenous retrovirus 15 Retroviridae 214 0.000677 0.100253
11228730_382_rc Human endogenous retrovirus 15 Retroviridae 194 0.000613 0.102523
11228730_388 Human endogenous retrovirus 15 Retroviridae 157 0.000496 0.100253
11228730_382 Human endogenous retrovirus 15 Retroviridae 126 0.000398 0.102523
11228730_164_rc Human endogenous retrovirus 15 Retroviridae 46 0.000145 0.080965
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.004271 p=0.644372
HCMVUL30_196 Human herpesvirus 5 Herpesviridae 339 0.001072 0.004158
HCMVTRL13_144 Human herpesvirus 5 Herpesviridae 207 0.000655 0.003641
HCMVUL95_185 Human herpesvirus 5 Herpesviridae 94 0.000297 0.005059
9625671_3138_rc Human herpesvirus 5 Herpesviridae 97 0.000307 0.004744
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 445 0.001407 0.000959
133899 Equine herpesvirus 2 s=0.002802 p=0.571272
18653809_2002 Cercopithecine herpesvirus 17 Herpesviridae 882 0.002789 0.003481
9628002_1474 Equid herpesvirus 2 Herpesviridae 89 0.000281 0.027830
9629267_2617_rc Human herpesvirus 2 Herpesviridae 281 0.000889 0.007518
9628002_1475 Equid herpesvirus 2 Herpesviridae 33 0.000104 0.029812
9625671_3138_rc Human herpesvirus 5 Herpesviridae 97 0.000307 0.008208
10368 Human herpesvirus 6 s=0.001259 p=0.671261
9628290_6056_rc Human herpesvirus 6 Herpesviridae 165 0.000522 0.011520
9633069_4614 Human herpesvirus 6B Herpesviridae 42 0.000133 0.032375
9633069_4615 Human herpesvirus 6B Herpesviridae 38 0.000120 0.031626
9628290_4065 Human herpesvirus 6 Herpesviridae 21 0.000066 0.044300
9633069_6481 Human herpesvirus 6B Herpesviridae 117 0.000370 0.007758
Iteration: 2
Family: Paramyxoviridae
63330 Hendra virus s=0.017924 p=0.003728
9630557_521_rc Hendra virus Paramyxoviridae 1378 0.007290 0.059915
9630557_521 Hendra virus Paramyxoviridae 638 0.003375 0.059915
9630557_512_rc Hendra virus Paramyxoviridae 478 0.002529 0.063396
9630557_523_rc Hendra virus Paramyxoviridae 98 0.000518 0.072672
9630557_566 Hendra virus Paramyxoviridae 87 0.000460 0.073839
Family: NA
9606 Homo sapiens s=0.006505 p=0.205099
11228730_388_rc Human endogenous retrovirus 15 Retroviridae 214 0.001132 0.100253
11228730_382_rc Human endogenous retrovirus 15 Retroviridae 194 0.001026 0.102523
11228730_388 Human endogenous retrovirus 15 Retroviridae 157 0.000831 0.100253
11228730_382 Human endogenous retrovirus 15 Retroviridae 126 0.000667 0.102523
11228730_164_rc Human endogenous retrovirus 15 Retroviridae 46 0.000243 0.080965
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.006175 p=0.535618
HCMVUL30_196 Human herpesvirus 5 Herpesviridae 339 0.001793 0.004158
HCMVTRL13_144 Human herpesvirus 5 Herpesviridae 207 0.001095 0.003641
HCMVUL95_185 Human herpesvirus 5 Herpesviridae 94 0.000497 0.005059
9625671_3138_rc Human herpesvirus 5 Herpesviridae 97 0.000513 0.004744
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 445 0.002354 0.000959
133899 Equine herpesvirus 2 s=0.004047 p=0.461985
18653809_2002 Cercopithecine herpesvirus 17 Herpesviridae 882 0.004666 0.003481
9628002_1474 Equid herpesvirus 2 Herpesviridae 89 0.000471 0.027830
9629267_2617_rc Human herpesvirus 2 Herpesviridae 281 0.001487 0.007518
9628002_1475 Equid herpesvirus 2 Herpesviridae 33 0.000175 0.029812
9625671_3138_rc Human herpesvirus 5 Herpesviridae 97 0.000513 0.008208
10368 Human herpesvirus 6 s=0.001821 p=0.573317
9628290_6056_rc Human herpesvirus 6 Herpesviridae 165 0.000873 0.011520
9633069_4614 Human herpesvirus 6B Herpesviridae 42 0.000222 0.032375
9633069_4615 Human herpesvirus 6B Herpesviridae 38 0.000201 0.031626
9628290_4065 Human herpesvirus 6 Herpesviridae 21 0.000111 0.044300
9633069_6481 Human herpesvirus 6B Herpesviridae 117 0.000619 0.007758
GSM40843
EPREDICT : 2007-03-28 14:54:08 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40843
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40843:GSM40843
Iteration: 1
Family: Orthomyxoviridae
130760 Influenza A virus s=0.498104 p=0.000001
8486129_59 Influenza A virus Orthomyxoviridae 65421 0.153254 0.161429
8486129_56 Influenza A virus Orthomyxoviridae 36389 0.085244 0.207068
8486129_2_rc Influenza A virus Orthomyxoviridae 65387 0.153174 0.070929
8486129_29_rc Influenza A virus Orthomyxoviridae 42948 0.100609 0.060575
8486129_59_rc Influenza A virus Orthomyxoviridae 3233 0.007574 0.161429
11320 Influenza A virus s=0.455607 p=0.000000
8486129_2_rc Influenza A virus Orthomyxoviridae 65387 0.153174 0.073315
8486129_20_rc Influenza A virus Orthomyxoviridae 65397 0.153198 0.073178
8486129_56 Influenza A virus Orthomyxoviridae 36389 0.085244 0.073726
8486129_29_rc Influenza A virus Orthomyxoviridae 42948 0.100609 0.061521
8486129_38 Influenza A virus Orthomyxoviridae 4731 0.011083 0.066505
183764 Influenza A virus s=0.442531 p=0.000000
8486129_2_rc Influenza A virus Orthomyxoviridae 65387 0.153174 0.075257
8486129_20_rc Influenza A virus Orthomyxoviridae 65397 0.153198 0.061872
8486129_56 Influenza A virus Orthomyxoviridae 36389 0.085244 0.075679
8486129_29_rc Influenza A virus Orthomyxoviridae 42948 0.100609 0.063151
8486129_38 Influenza A virus Orthomyxoviridae 4731 0.011083 0.068267
Iteration: 2
Family: Orthomyxoviridae
11320 Influenza A virus s=0.261153 p=0.000002
8486129_20_rc Influenza A virus Orthomyxoviridae 65397 0.310012 0.073178
8486129_38 Influenza A virus Orthomyxoviridae 4731 0.022427 0.066505
8486129_20 Influenza A virus Orthomyxoviridae 153 0.000725 0.073178
8486125_68 Influenza A virus Orthomyxoviridae 35 0.000166 0.059903
8486125_61 Influenza A virus Orthomyxoviridae 33 0.000156 0.055773
183764 Influenza A virus s=0.224039 p=0.000003
8486129_20_rc Influenza A virus Orthomyxoviridae 65397 0.310012 0.061872
8486129_38 Influenza A virus Orthomyxoviridae 4731 0.022427 0.068267
8486129_20 Influenza A virus Orthomyxoviridae 153 0.000725 0.061872
8486125_68 Influenza A virus Orthomyxoviridae 35 0.000166 0.061490
8486125_61 Influenza A virus Orthomyxoviridae 33 0.000156 0.057251
GSM40844
EPREDICT : 2007-03-28 14:55:48 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40844
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40844:GSM40844
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.284166 p=0.004684
9627730_13_rc Human rhinovirus A Picornaviridae 65405 0.026613 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65445 0.026629 0.020705
9627730_22_rc Human rhinovirus A Picornaviridae 65447 0.026630 0.016616
9627730_117_rc Human rhinovirus A Picornaviridae 58939 0.023982 0.014170
4731888_25_rc Human rhinovirus sp. Picornaviridae 65445 0.026629 0.008428
138950 Human enterovirus C s=0.154072 p=0.000287
9626433_17_rc Human enterovirus C Picornaviridae 65438 0.026627 0.029244
9626433_19_rc Human enterovirus C Picornaviridae 36115 0.014695 0.030944
9626436_18_rc Human enterovirus 70 Picornaviridae 37539 0.015275 0.015432
9629634_17_rc Porcine enterovirus B Picornaviridae 59439 0.024186 0.009571
12408699_18_rc Poliovirus Picornaviridae 65458 0.026635 0.008578
12090 Human enterovirus D s=0.146140 p=0.000333
9626436_18_rc Human enterovirus 70 Picornaviridae 37539 0.015275 0.033147
9626433_17_rc Human enterovirus C Picornaviridae 65438 0.026627 0.018469
12408699_18_rc Poliovirus Picornaviridae 65458 0.026635 0.010949
9626436_21_rc Human enterovirus 70 Picornaviridae 15008 0.006107 0.031978
9629634_17_rc Porcine enterovirus B Picornaviridae 59439 0.024186 0.007566
138953 Poliovirus s=0.142377 p=0.000245
12408699_18_rc Poliovirus Picornaviridae 65458 0.026635 0.028609
9626433_17_rc Human enterovirus C Picornaviridae 65438 0.026627 0.017603
12408699_21_rc Poliovirus Picornaviridae 16520 0.006722 0.030078
9626436_18_rc Human enterovirus 70 Picornaviridae 37539 0.015275 0.010854
9629634_17_rc Porcine enterovirus B Picornaviridae 59439 0.024186 0.004988
147712 Human rhinovirus B s=0.132619 p=0.000523
9626735_22_rc Human rhinovirus B Picornaviridae 47845 0.019468 0.019391
9626735_43_rc Human rhinovirus B Picornaviridae 41897 0.017048 0.019689
9626735_8_rc Human rhinovirus B Picornaviridae 40343 0.016415 0.020065
9626735_18_rc Human rhinovirus B Picornaviridae 32943 0.013404 0.022396
9629176_21_rc Human rhinovirus 16 Picornaviridae 65444 0.026629 0.005246
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.001043 p=0.595217
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 934 0.000380 0.051960
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 205 0.000083 0.052060
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 160 0.000065 0.055619
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 90 0.000037 0.064086
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 54 0.000022 0.041460
Iteration: 2
Family: Picornaviridae
147712 Human rhinovirus B s=0.090494 p=0.001699
9626735_43_rc Human rhinovirus B Picornaviridae 41897 0.118895 0.019689
9626735_25_rc Human rhinovirus B Picornaviridae 13347 0.037876 0.017261
9626735_25 Human rhinovirus B Picornaviridae 4004 0.011363 0.017261
9626735_257 Human rhinovirus B Picornaviridae 1729 0.004907 0.019989
9626735_14_rc Human rhinovirus B Picornaviridae 258 0.000732 0.024898
138950 Human enterovirus C s=0.083108 p=0.001823
9626433_19_rc Human enterovirus C Picornaviridae 36115 0.102487 0.030944
21363125_2 Human echovirus 1 Picornaviridae 1558 0.004421 0.002871
9627719_14_rc Human enterovirus A Picornaviridae 948 0.002690 0.004323
9632987_20_rc Human coxsackievirus B2 Picornaviridae 463 0.001314 0.003273
9626433_50 Human enterovirus C Picornaviridae 41 0.000116 0.028439
12090 Human enterovirus D s=0.027207 p=0.031038
9626433_19_rc Human enterovirus C Picornaviridae 36115 0.102487 0.010053
9626436_232_rc Human enterovirus 70 Picornaviridae 163 0.000463 0.029258
9626436_272_rc Human enterovirus 70 Picornaviridae 31 0.000088 0.025871
9627719_10_rc Human enterovirus A Picornaviridae 216 0.000613 0.002587
9632987_14_rc Human coxsackievirus B2 Picornaviridae 173 0.000491 0.003033
169066 Human rhinovirus sp. s=0.024999 p=0.006816
61098_77_rc Human rhinovirus sp. Picornaviridae 5819 0.016513 0.039854
61098_77 Human rhinovirus sp. Picornaviridae 4027 0.011428 0.039854
61098_31 Human rhinovirus sp. Picornaviridae 132 0.000375 0.034650
61098_276_rc Human rhinovirus sp. Picornaviridae 91 0.000258 0.037355
61098_187 Human rhinovirus sp. Picornaviridae 43 0.000122 0.036614
123738 Enterovirus Yanbian 96-83csf s=0.016394 p=0.114855
9626433_19_rc Human enterovirus C Picornaviridae 36115 0.102487 0.002674
21363125_2 Human echovirus 1 Picornaviridae 1558 0.004421 0.011270
9627719_14_rc Human enterovirus A Picornaviridae 948 0.002690 0.010612
9632987_1_rc Human coxsackievirus B2 Picornaviridae 445 0.001263 0.013205
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 238 0.000675 0.012188
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.003660 p=0.177823
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 934 0.002650 0.051960
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 205 0.000582 0.052060
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 160 0.000454 0.055619
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 90 0.000255 0.064086
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 54 0.000153 0.041460
GSM40845
EPREDICT : 2007-03-28 14:57:39 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40845
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40845:GSM40845
Iteration: 1
Family: Orthomyxoviridae
11320 Influenza A virus s=0.469657 p=0.000000
8486129_20_rc Influenza A virus Orthomyxoviridae 65400 0.184579 0.073178
8486129_38 Influenza A virus Orthomyxoviridae 65409 0.184605 0.066505
8486129_29 Influenza A virus Orthomyxoviridae 31856 0.089908 0.061521
8486129_29_rc Influenza A virus Orthomyxoviridae 27972 0.078946 0.061521
8486129_2 Influenza A virus Orthomyxoviridae 1764 0.004979 0.073315
183764 Influenza A virus s=0.451387 p=0.000000
8486129_38 Influenza A virus Orthomyxoviridae 65409 0.184605 0.068267
8486129_20_rc Influenza A virus Orthomyxoviridae 65400 0.184579 0.061872
8486129_29 Influenza A virus Orthomyxoviridae 31856 0.089908 0.063151
8486129_29_rc Influenza A virus Orthomyxoviridae 27972 0.078946 0.063151
8486129_2 Influenza A virus Orthomyxoviridae 1764 0.004979 0.075257
130760 Influenza A virus s=0.089412 p=0.000234
8486129_29 Influenza A virus Orthomyxoviridae 31856 0.089908 0.060575
8486129_29_rc Influenza A virus Orthomyxoviridae 27972 0.078946 0.060575
8486129_2 Influenza A virus Orthomyxoviridae 1764 0.004979 0.070929
8486129_2_rc Influenza A virus Orthomyxoviridae 1347 0.003802 0.070929
8486129_59_rc Influenza A virus Orthomyxoviridae 16 0.000045 0.161429
Family: Paramyxoviridae
11250 Human respiratory syncytial virus s=0.032236 p=0.008671
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 2280 0.006435 0.065924
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 1828 0.005159 0.053916
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 2353 0.006641 0.037270
9629198_111 Human respiratory syncytial virus Paramyxoviridae 1390 0.003923 0.049603
9629198_131 Human respiratory syncytial virus Paramyxoviridae 797 0.002249 0.065924
12814 Respiratory syncytial virus s=0.022106 p=0.007545
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 2353 0.006641 0.050854
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 2280 0.006435 0.036764
9629198_131 Human respiratory syncytial virus Paramyxoviridae 797 0.002249 0.036764
9629367_130 Respiratory syncytial virus Paramyxoviridae 526 0.001485 0.050854
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 353 0.000996 0.047021
11246 Bovine respiratory syncytial virus s=0.009793 p=0.030456
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 2353 0.006641 0.010961
9631267_463_rc Bovine respiratory syncytial virus Paramyxoviridae 506 0.001428 0.049394
9631267_156 Bovine respiratory syncytial virus Paramyxoviridae 468 0.001321 0.040235
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 2280 0.006435 0.007664
9629198_133 Human respiratory syncytial virus Paramyxoviridae 789 0.002227 0.019006
162145 Turkey rhinotracheitis virus s=0.001604 p=0.467995
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 1828 0.005159 0.008364
22780169_372_rc Human metapneumovirus Paramyxoviridae 125 0.000353 0.055561
22780169_354_rc Human metapneumovirus Paramyxoviridae 90 0.000254 0.057362
9629198_434 Human respiratory syncytial virus Paramyxoviridae 394 0.001112 0.008364
22780169_372 Human metapneumovirus Paramyxoviridae 41 0.000116 0.055561
Iteration: 2
Family: Paramyxoviridae
11250 Human respiratory syncytial virus s=0.088191 p=0.000552
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 2280 0.014230 0.065924
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 1828 0.011409 0.053916
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 2353 0.014686 0.037270
9629198_111 Human respiratory syncytial virus Paramyxoviridae 1390 0.008675 0.049603
9629198_131 Human respiratory syncytial virus Paramyxoviridae 797 0.004974 0.065924
12814 Respiratory syncytial virus s=0.060480 p=0.000391
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 2353 0.014686 0.050854
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 2280 0.014230 0.036764
9629198_131 Human respiratory syncytial virus Paramyxoviridae 797 0.004974 0.036764
9629367_130 Respiratory syncytial virus Paramyxoviridae 526 0.003283 0.050854
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 353 0.002203 0.047021
11246 Bovine respiratory syncytial virus s=0.026789 p=0.002531
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 2353 0.014686 0.010961
9631267_463_rc Bovine respiratory syncytial virus Paramyxoviridae 506 0.003158 0.049394
9631267_156 Bovine respiratory syncytial virus Paramyxoviridae 468 0.002921 0.040235
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 2280 0.014230 0.007664
9629198_133 Human respiratory syncytial virus Paramyxoviridae 789 0.004924 0.019006
162145 Turkey rhinotracheitis virus s=0.004388 p=0.190907
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 1828 0.011409 0.008364
22780169_372_rc Human metapneumovirus Paramyxoviridae 125 0.000780 0.055561
22780169_354_rc Human metapneumovirus Paramyxoviridae 90 0.000562 0.057362
9629198_434 Human respiratory syncytial virus Paramyxoviridae 394 0.002459 0.008364
22780169_372 Human metapneumovirus Paramyxoviridae 41 0.000256 0.055561
GSM40846
EPREDICT : 2007-03-28 14:59:21 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40846
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40846:GSM40846
Iteration: 1
Family: Picornaviridae
147712 Human rhinovirus B s=0.369782 p=0.000013
9626735_14_rc Human rhinovirus B Picornaviridae 65450 0.041707 0.024898
9626735_16_rc Human rhinovirus B Picornaviridae 65452 0.041709 0.023121
9626735_8_rc Human rhinovirus B Picornaviridae 64076 0.040832 0.020065
9626735_10_rc Human rhinovirus B Picornaviridae 65449 0.041707 0.019131
9626735_18_rc Human rhinovirus B Picornaviridae 38983 0.024842 0.022396
147711 Human rhinovirus A s=0.157857 p=0.014776
9627730_19_rc Human rhinovirus A Picornaviridae 65456 0.041711 0.019466
9627730_22_rc Human rhinovirus A Picornaviridae 30995 0.019751 0.016616
4731899_34_rc Human rhinovirus sp. Picornaviridae 60774 0.038728 0.007976
9629176_21_rc Human rhinovirus 16 Picornaviridae 65450 0.041707 0.005468
4731875_44_rc Human rhinovirus sp. Picornaviridae 63952 0.040753 0.004170
123738 Enterovirus Yanbian 96-83csf s=0.137713 p=0.000942
21363125_18_rc Human echovirus 1 Picornaviridae 41012 0.026135 0.013713
21363125_21_rc Human echovirus 1 Picornaviridae 37735 0.024046 0.008628
9626433_17_rc Human enterovirus C Picornaviridae 37628 0.023978 0.007690
9626677_18_rc Human enterovirus B Picornaviridae 18886 0.012035 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 16825 0.010722 0.012676
46633 Human echovirus 1 s=0.134871 p=0.001050
21363125_18_rc Human echovirus 1 Picornaviridae 41012 0.026135 0.018139
21363125_21_rc Human echovirus 1 Picornaviridae 37735 0.024046 0.018603
9626677_18_rc Human enterovirus B Picornaviridae 18886 0.012035 0.011222
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 25772 0.016423 0.007974
9626433_17_rc Human enterovirus C Picornaviridae 37628 0.023978 0.004093
138948 Human enterovirus A s=0.125148 p=0.000804
21363125_18_rc Human echovirus 1 Picornaviridae 41012 0.026135 0.010667
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 25772 0.016423 0.015822
21363125_21_rc Human echovirus 1 Picornaviridae 37735 0.024046 0.010430
9627719_22_rc Human enterovirus A Picornaviridae 15483 0.009866 0.015851
9626677_18_rc Human enterovirus B Picornaviridae 18886 0.012035 0.011370
Family: NA
89463 Sacbrood virus s=0.009835 p=0.026857
9632405_343_rc Sacbrood virus Iflavirus 7898 0.005033 0.063762
9632405_343 Sacbrood virus Iflavirus 493 0.000314 0.063762
9632405_347_rc Sacbrood virus Iflavirus 189 0.000120 0.049549
9632405_349_rc Sacbrood virus Iflavirus 60 0.000038 0.042675
9632405_347 Sacbrood virus Iflavirus 45 0.000029 0.049549
Family: Adenoviridae
129875 Human adenovirus A s=0.001322 p=0.742107
9626621_749_rc Human adenovirus A Adenoviridae 514 0.000328 0.034897
9626621_745_rc Human adenovirus A Adenoviridae 393 0.000250 0.031120
9626621_773_rc Human adenovirus A Adenoviridae 293 0.000187 0.035926
9626187_754_rc Human adenovirus type 5 Adenoviridae 345 0.000220 0.008387
9626621_715_rc Human adenovirus A Adenoviridae 50 0.000032 0.040489
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.000858 p=0.663536
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 265 0.000169 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 193 0.000123 0.052060
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 133 0.000085 0.064086
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 91 0.000058 0.051960
9629935_398 Rhopalosiphum padi virus Dicistroviridae 42 0.000027 0.052060
Family: Siphoviridae
196242 Phage phi 4795 s=0.000701 p=0.819884
9632466_695 Bacteriophage 933W Siphoviridae 108 0.000069 0.035568
13559823_493 Bacteriophage HK620 Siphoviridae 151 0.000096 0.024880
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 125 0.000080 0.028462
9632466_620 Bacteriophage 933W Siphoviridae 126 0.000080 0.027715
9632466_695_rc Bacteriophage 933W Siphoviridae 87 0.000055 0.035568
194948 Stx1 converting bacteriophage s=0.000583 p=0.872473
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 125 0.000080 0.021564
9632466_620 Bacteriophage 933W Siphoviridae 126 0.000080 0.021036
13559823_493 Bacteriophage HK620 Siphoviridae 151 0.000096 0.016861
9632466_695 Bacteriophage 933W Siphoviridae 108 0.000069 0.015793
9632466_695_rc Bacteriophage 933W Siphoviridae 87 0.000055 0.015793
10730 Bacteriophage 933W s=0.000580 p=0.862510
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 125 0.000080 0.020141
9632466_620 Bacteriophage 933W Siphoviridae 126 0.000080 0.019648
13559823_493 Bacteriophage HK620 Siphoviridae 151 0.000096 0.016259
9632466_695 Bacteriophage 933W Siphoviridae 108 0.000069 0.021938
9632466_695_rc Bacteriophage 933W Siphoviridae 87 0.000055 0.021938
Family: Podoviridae
173443 Salmonella typhimurium bacteriophage ST6 s=0.000575 p=0.864193
9632466_620 Bacteriophage 933W Siphoviridae 126 0.000080 0.027361
13559823_493 Bacteriophage HK620 Siphoviridae 151 0.000096 0.022270
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 125 0.000080 0.026570
9632466_695 Bacteriophage 933W Siphoviridae 108 0.000069 0.014393
9632466_695_rc Bacteriophage 933W Siphoviridae 87 0.000055 0.014393
Iteration: 2
Family: Picornaviridae
138948 Human enterovirus A s=0.107504 p=0.001275
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 25772 0.112344 0.015822
9627719_14_rc Human enterovirus A Picornaviridae 4510 0.019660 0.020675
21363125_2 Human echovirus 1 Picornaviridae 2999 0.013073 0.003755
9632987_14_rc Human coxsackievirus B2 Picornaviridae 1018 0.004438 0.003670
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 205 0.000894 0.006808
46633 Human echovirus 1 s=0.066135 p=0.007439
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 25772 0.112344 0.007974
21363125_2 Human echovirus 1 Picornaviridae 2999 0.013073 0.016623
9627719_14_rc Human enterovirus A Picornaviridae 4510 0.019660 0.007800
9632987_14_rc Human coxsackievirus B2 Picornaviridae 1018 0.004438 0.011800
12408699_288 Poliovirus Picornaviridae 7449 0.032471 0.001504
123738 Enterovirus Yanbian 96-83csf s=0.065209 p=0.007381
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 25772 0.112344 0.007980
9627719_14_rc Human enterovirus A Picornaviridae 4510 0.019660 0.010612
21363125_2 Human echovirus 1 Picornaviridae 2999 0.013073 0.011270
9632987_14_rc Human coxsackievirus B2 Picornaviridae 1018 0.004438 0.012676
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 205 0.000894 0.012188
138949 Human enterovirus B s=0.061850 p=0.006089
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 25772 0.112344 0.008336
9627719_14_rc Human enterovirus A Picornaviridae 4510 0.019660 0.010284
21363125_2 Human echovirus 1 Picornaviridae 2999 0.013073 0.005556
9632987_14_rc Human coxsackievirus B2 Picornaviridae 1018 0.004438 0.008533
13242737_8_rc Enterovirus CA55-1988 Picornaviridae 205 0.000894 0.005139
Family: NA
89463 Sacbrood virus s=0.047808 p=0.000410
9632405_343_rc Sacbrood virus Iflavirus 7898 0.034428 0.063762
9632405_343 Sacbrood virus Iflavirus 493 0.002149 0.063762
9632405_347_rc Sacbrood virus Iflavirus 189 0.000824 0.049549
9632405_349_rc Sacbrood virus Iflavirus 60 0.000262 0.042675
9632405_347 Sacbrood virus Iflavirus 45 0.000196 0.049549
Family: Adenoviridae
129875 Human adenovirus A s=0.006426 p=0.297446
9626621_749_rc Human adenovirus A Adenoviridae 514 0.002241 0.034897
9626621_745_rc Human adenovirus A Adenoviridae 393 0.001713 0.031120
9626621_773_rc Human adenovirus A Adenoviridae 293 0.001277 0.035926
9626187_754_rc Human adenovirus type 5 Adenoviridae 345 0.001504 0.008387
9626621_715_rc Human adenovirus A Adenoviridae 50 0.000218 0.040489
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.004163 p=0.148437
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 265 0.001155 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 193 0.000841 0.052060
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 133 0.000580 0.064086
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 91 0.000397 0.051960
9629935_398 Rhopalosiphum padi virus Dicistroviridae 42 0.000183 0.052060
Family: Siphoviridae
196242 Phage phi 4795 s=0.003402 p=0.372174
9632466_695 Bacteriophage 933W Siphoviridae 108 0.000471 0.035568
13559823_493 Bacteriophage HK620 Siphoviridae 151 0.000658 0.024880
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 125 0.000545 0.028462
9632466_620 Bacteriophage 933W Siphoviridae 126 0.000549 0.027715
9632466_695_rc Bacteriophage 933W Siphoviridae 87 0.000379 0.035568
194948 Stx1 converting bacteriophage s=0.002827 p=0.430741
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 125 0.000545 0.021564
9632466_620 Bacteriophage 933W Siphoviridae 126 0.000549 0.021036
13559823_493 Bacteriophage HK620 Siphoviridae 151 0.000658 0.016861
9632466_695 Bacteriophage 933W Siphoviridae 108 0.000471 0.015793
9632466_695_rc Bacteriophage 933W Siphoviridae 87 0.000379 0.015793
10730 Bacteriophage 933W s=0.002817 p=0.418916
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 125 0.000545 0.020141
9632466_620 Bacteriophage 933W Siphoviridae 126 0.000549 0.019648
13559823_493 Bacteriophage HK620 Siphoviridae 151 0.000658 0.016259
9632466_695 Bacteriophage 933W Siphoviridae 108 0.000471 0.021938
9632466_695_rc Bacteriophage 933W Siphoviridae 87 0.000379 0.021938
Family: Podoviridae
173443 Salmonella typhimurium bacteriophage ST6 s=0.002789 p=0.412045
9632466_620 Bacteriophage 933W Siphoviridae 126 0.000549 0.027361
13559823_493 Bacteriophage HK620 Siphoviridae 151 0.000658 0.022270
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 125 0.000545 0.026570
9632466_695 Bacteriophage 933W Siphoviridae 108 0.000471 0.014393
9632466_695_rc Bacteriophage 933W Siphoviridae 87 0.000379 0.014393
GSM40847
EPREDICT : 2007-03-28 15:01:15 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40847
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40847:GSM40847
Iteration: 1
Family: Picornaviridae
46633 Human echovirus 1 s=0.414618 p=0.000022
21363125_21_rc Human echovirus 1 Picornaviridae 65466 0.011454 0.018603
21363125_18_rc Human echovirus 1 Picornaviridae 65470 0.011455 0.018139
21363125_2 Human echovirus 1 Picornaviridae 65479 0.011456 0.016623
21363125_2_rc Human echovirus 1 Picornaviridae 65477 0.011456 0.016623
21363125_23_rc Human echovirus 1 Picornaviridae 64413 0.011270 0.014342
123738 Enterovirus Yanbian 96-83csf s=0.412299 p=0.000022
9629181_13_rc Human enterovirus 71 Picornaviridae 65476 0.011456 0.014625
9627719_18_rc Human enterovirus A Picornaviridae 65471 0.011455 0.014625
9635675_13_rc Swine vesicular disease virus Picornaviridae 65486 0.011458 0.014460
21363125_18_rc Human echovirus 1 Picornaviridae 65470 0.011455 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65467 0.011454 0.013331
138949 Human enterovirus B s=0.386095 p=0.000014
9626677_18_rc Human enterovirus B Picornaviridae 65467 0.011454 0.016792
9626677_22_rc Human enterovirus B Picornaviridae 65456 0.011452 0.015761
9629181_13_rc Human enterovirus 71 Picornaviridae 65476 0.011456 0.014878
9635432_20_rc Human coxsackievirus A9 Picornaviridae 65468 0.011454 0.013908
9627719_22_rc Human enterovirus A Picornaviridae 65458 0.011453 0.012198
138948 Human enterovirus A s=0.378912 p=0.000016
9627719_14_rc Human enterovirus A Picornaviridae 65479 0.011456 0.020675
9627719_12_rc Human enterovirus A Picornaviridae 65472 0.011455 0.016143
9627719_22_rc Human enterovirus A Picornaviridae 65458 0.011453 0.015851
13242735_13_rc Enterovirus 5865/sin/000009 Picornaviridae 65465 0.011454 0.015822
9627719_18_rc Human enterovirus A Picornaviridae 65471 0.011455 0.015332
12090 Human enterovirus D s=0.296065 p=0.000026
9626436_18_rc Human enterovirus 70 Picornaviridae 65471 0.011455 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65481 0.011457 0.031978
9626436_176 Human enterovirus 70 Picornaviridae 65474 0.011455 0.022741
9626436_176_rc Human enterovirus 70 Picornaviridae 55535 0.009717 0.022741
9626433_17_rc Human enterovirus C Picornaviridae 65471 0.011455 0.018469
Family: NA
89463 Sacbrood virus s=0.013472 p=0.013517
9632405_343_rc Sacbrood virus Iflavirus 24870 0.004351 0.063762
9632405_343 Sacbrood virus Iflavirus 369 0.000065 0.063762
9632405_351_rc Sacbrood virus Iflavirus 538 0.000094 0.042383
9632405_347_rc Sacbrood virus Iflavirus 421 0.000074 0.049549
9632405_167_rc Sacbrood virus Iflavirus 223 0.000039 0.052637
Family: Luteoviridae
12049 Soybean dwarf virus s=0.007205 p=0.001616
15150434_82_rc Soybean dwarf virus Luteoviridae 6743 0.001180 0.062376
15150434_136_rc Soybean dwarf virus Luteoviridae 3970 0.000695 0.078346
15150434_131_rc Soybean dwarf virus Luteoviridae 2077 0.000363 0.067367
18314284_132_rc Bean leafroll virus Luteoviridae 926 0.000162 0.010152
15150434_50_rc Soybean dwarf virus Luteoviridae 106 0.000019 0.072821
Family: Partitiviridae
148880 Discula destructiva virus 1 s=0.005303 p=0.030917
14327711_44_rc Discula destructiva virus 1 Partitiviridae 4757 0.000832 0.071969
14327711_22_rc Discula destructiva virus 1 Partitiviridae 4484 0.000785 0.062512
14327711_60_rc Discula destructiva virus 1 Partitiviridae 1036 0.000181 0.069477
14327711_60 Discula destructiva virus 1 Partitiviridae 53 0.000009 0.069477
14327711_42 Discula destructiva virus 1 Partitiviridae 34 0.000006 0.059708
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.004283 p=0.142416
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 5626 0.000984 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 1913 0.000335 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 491 0.000086 0.041460
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 307 0.000054 0.051960
9629935_397_rc Rhopalosiphum padi virus Dicistroviridae 189 0.000033 0.044551
Family: Flexiviridae
148879 Banana mild mosaic virus s=0.004179 p=0.007409
13559817_169_rc Banana mild mosaic virus Flexiviridae 4813 0.000842 0.091858
13559817_183_rc Banana mild mosaic virus Flexiviridae 2126 0.000372 0.100317
13559817_208_rc Banana mild mosaic virus Flexiviridae 540 0.000094 0.093987
13559817_169 Banana mild mosaic virus Flexiviridae 23 0.000004 0.091858
13559817_180_rc Banana mild mosaic virus Flexiviridae 18 0.000003 0.102744
Iteration: 2
Family: Picornaviridae
147711 Human rhinovirus A s=0.226256 p=0.007454
9627730_13_rc Human rhinovirus A Picornaviridae 65465 0.034097 0.021650
9627730_19_rc Human rhinovirus A Picornaviridae 65351 0.034038 0.019466
9627730_12_rc Human rhinovirus A Picornaviridae 32555 0.016956 0.020705
4731888_25_rc Human rhinovirus sp. Picornaviridae 65478 0.034104 0.008428
61098_13_rc Human rhinovirus sp. Picornaviridae 65486 0.034108 0.008314
12064 Bovine enterovirus s=0.063790 p=0.000026
9629892_24_rc Bovine enterovirus Picornaviridae 65481 0.034106 0.053881
9629892_245_rc Bovine enterovirus Picornaviridae 852 0.000444 0.041284
9629892_177 Bovine enterovirus Picornaviridae 308 0.000160 0.052356
9629892_288_rc Bovine enterovirus Picornaviridae 255 0.000133 0.051321
9629892_273_rc Bovine enterovirus Picornaviridae 164 0.000085 0.046745
147712 Human rhinovirus B s=0.062474 p=0.004781
9626735_3_rc Human rhinovirus B Picornaviridae 65483 0.034107 0.019131
9626735_8_rc Human rhinovirus B Picornaviridae 24479 0.012750 0.020065
9626735_257 Human rhinovirus B Picornaviridae 19110 0.009953 0.019989
9626735_6_rc Human rhinovirus B Picornaviridae 1742 0.000907 0.017826
9626735_66_rc Human rhinovirus B Picornaviridae 1410 0.000734 0.021527
106966 Porcine enterovirus B s=0.055528 p=0.009948
9629634_19_rc Porcine enterovirus B Picornaviridae 54202 0.028231 0.033721
9629634_282_rc Porcine enterovirus B Picornaviridae 5071 0.002641 0.023745
9629634_282 Porcine enterovirus B Picornaviridae 1546 0.000805 0.023745
9629634_247 Porcine enterovirus B Picornaviridae 1209 0.000630 0.026051
9629634_230 Porcine enterovirus B Picornaviridae 1065 0.000555 0.026198
12090 Human enterovirus D s=0.037930 p=0.015019
9626436_232_rc Human enterovirus 70 Picornaviridae 33615 0.017508 0.029258
9626436_232 Human enterovirus 70 Picornaviridae 9542 0.004970 0.029258
9626436_244 Human enterovirus 70 Picornaviridae 4366 0.002274 0.023878
9626436_150_rc Human enterovirus 70 Picornaviridae 1119 0.000583 0.024737
9626436_244_rc Human enterovirus 70 Picornaviridae 991 0.000516 0.023878
Family: NA
89463 Sacbrood virus s=0.027382 p=0.002211
9632405_343_rc Sacbrood virus Iflavirus 24870 0.012953 0.063762
9632405_343 Sacbrood virus Iflavirus 369 0.000192 0.063762
9632405_351_rc Sacbrood virus Iflavirus 538 0.000280 0.042383
9632405_347_rc Sacbrood virus Iflavirus 421 0.000219 0.049549
9632405_167_rc Sacbrood virus Iflavirus 223 0.000116 0.052637
Family: Luteoviridae
12049 Soybean dwarf virus s=0.014647 p=0.000082
15150434_82_rc Soybean dwarf virus Luteoviridae 6743 0.003512 0.062376
15150434_136_rc Soybean dwarf virus Luteoviridae 3970 0.002068 0.078346
15150434_131_rc Soybean dwarf virus Luteoviridae 2077 0.001082 0.067367
18314284_132_rc Bean leafroll virus Luteoviridae 926 0.000482 0.010152
15150434_50_rc Soybean dwarf virus Luteoviridae 106 0.000055 0.072821
Family: Partitiviridae
148880 Discula destructiva virus 1 s=0.010786 p=0.005502
14327711_44_rc Discula destructiva virus 1 Partitiviridae 4757 0.002478 0.071969
14327711_22_rc Discula destructiva virus 1 Partitiviridae 4484 0.002335 0.062512
14327711_60_rc Discula destructiva virus 1 Partitiviridae 1036 0.000540 0.069477
14327711_60 Discula destructiva virus 1 Partitiviridae 53 0.000028 0.069477
14327711_42 Discula destructiva virus 1 Partitiviridae 34 0.000018 0.059708
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.008705 p=0.042036
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 5626 0.002930 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 1913 0.000996 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 491 0.000256 0.041460
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 307 0.000160 0.051960
9629935_397_rc Rhopalosiphum padi virus Dicistroviridae 189 0.000098 0.044551
Family: Flexiviridae
148879 Banana mild mosaic virus s=0.008501 p=0.000771
13559817_169_rc Banana mild mosaic virus Flexiviridae 4813 0.002507 0.091858
13559817_183_rc Banana mild mosaic virus Flexiviridae 2126 0.001107 0.100317
13559817_208_rc Banana mild mosaic virus Flexiviridae 540 0.000281 0.093987
13559817_169 Banana mild mosaic virus Flexiviridae 23 0.000012 0.091858
13559817_183 Banana mild mosaic virus Flexiviridae 20 0.000010 0.100317
GSM40848
EPREDICT : 2007-03-28 15:05:00 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40848
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40848:GSM40848
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.341792 p=0.003158
9627730_13_rc Human rhinovirus A Picornaviridae 65449 0.013860 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65444 0.013859 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65438 0.013858 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65449 0.013860 0.018468
9627730_158_rc Human rhinovirus A Picornaviridae 65245 0.013817 0.017696
12090 Human enterovirus D s=0.189146 p=0.000137
9626436_18_rc Human enterovirus 70 Picornaviridae 65450 0.013860 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 64352 0.013628 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65442 0.013859 0.018469
12408699_21_rc Poliovirus Picornaviridae 65461 0.013863 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65460 0.013862 0.014212
147712 Human rhinovirus B s=0.185813 p=0.000168
9626735_18_rc Human rhinovirus B Picornaviridae 65448 0.013860 0.022396
9626735_20_rc Human rhinovirus B Picornaviridae 65440 0.013858 0.021059
9626735_22_rc Human rhinovirus B Picornaviridae 65444 0.013859 0.019391
9626735_43_rc Human rhinovirus B Picornaviridae 62522 0.013240 0.019689
9626735_14_rc Human rhinovirus B Picornaviridae 48999 0.010376 0.024898
123738 Enterovirus Yanbian 96-83csf s=0.183509 p=0.000382
9627719_18_rc Human enterovirus A Picornaviridae 65456 0.013862 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 65445 0.013859 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65451 0.013860 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65452 0.013861 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65456 0.013862 0.012615
46633 Human echovirus 1 s=0.168359 p=0.000529
21363125_21_rc Human echovirus 1 Picornaviridae 65448 0.013860 0.018603
21363125_18_rc Human echovirus 1 Picornaviridae 65445 0.013859 0.018139
9627719_18_rc Human enterovirus A Picornaviridae 65456 0.013862 0.012473
9626677_18_rc Human enterovirus B Picornaviridae 65451 0.013860 0.011222
21363125_23_rc Human echovirus 1 Picornaviridae 44994 0.009528 0.014342
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.004519 p=0.131508
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 7180 0.001520 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 803 0.000170 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 695 0.000147 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 712 0.000151 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 411 0.000087 0.041460
Family: Herpesviridae
188763 Chimpanzee cytomegalovirus s=0.000817 p=0.912933
9625671_3107 Human herpesvirus 5 Herpesviridae 799 0.000169 0.019411
9625671_3108 Human herpesvirus 5 Herpesviridae 1339 0.000284 0.011401
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 1059 0.000224 0.004062
9625671_6538_rc Human herpesvirus 5 Herpesviridae 69 0.000015 0.015225
20026600_5411_rc Pongine herpesvirus 4 Herpesviridae 26 0.000006 0.024872
10359 Human herpesvirus 5 s=0.000811 p=0.949021
9625671_3108 Human herpesvirus 5 Herpesviridae 1339 0.000284 0.005138
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 1059 0.000224 0.004454
9625671_3107 Human herpesvirus 5 Herpesviridae 799 0.000169 0.005685
HCMVUL125_14 Human herpesvirus 5 Herpesviridae 242 0.000051 0.003820
HCMVUL48_62 Human herpesvirus 5 Herpesviridae 159 0.000034 0.005077
Family: Siphoviridae
151534 Bacteriophage bIL311 s=0.000666 p=0.561333
13095658_419_rc Bacteriophage bIL311 Siphoviridae 645 0.000137 0.068105
13095658_493_rc Bacteriophage bIL311 Siphoviridae 334 0.000071 0.067644
13095658_513_rc Bacteriophage bIL311 Siphoviridae 106 0.000022 0.063269
13095658_502_rc Bacteriophage bIL311 Siphoviridae 22 0.000005 0.077652
13095658_515_rc Bacteriophage bIL311 Siphoviridae 17 0.000004 0.076833
Family: NA
141860 Grapevine fanleaf virus satellite RNA s=0.000508 p=0.733666
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 422 0.000089 0.061403
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 195 0.000041 0.071992
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 204 0.000043 0.067655
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 44 0.000009 0.060503
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 35 0.000007 0.072605
Family: Adenoviridae
130309 Human adenovirus F s=0.000397 p=0.956036
9626553_810_rc Human adenovirus F Adenoviridae 221 0.000047 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 173 0.000037 0.033578
9626187_866_rc Human adenovirus type 5 Adenoviridae 181 0.000038 0.013013
9626553_717 Human adenovirus F Adenoviridae 42 0.000009 0.033578
9626553_793_rc Human adenovirus F Adenoviridae 51 0.000011 0.024888
Iteration: 2
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.174155 p=0.000009
61098_58 Human rhinovirus sp. Picornaviridae 65452 0.051723 0.036984
61098_178 Human rhinovirus sp. Picornaviridae 57655 0.045561 0.034722
61098_131_rc Human rhinovirus sp. Picornaviridae 39262 0.031026 0.032392
61098_187 Human rhinovirus sp. Picornaviridae 23855 0.018851 0.036614
61098_45_rc Human rhinovirus sp. Picornaviridae 4511 0.003565 0.033441
147712 Human rhinovirus B s=0.151071 p=0.000341
9626735_20_rc Human rhinovirus B Picornaviridae 65440 0.051713 0.021059
9626735_43_rc Human rhinovirus B Picornaviridae 62522 0.049407 0.019689
9626735_14_rc Human rhinovirus B Picornaviridae 48999 0.038721 0.024898
9626735_82_rc Human rhinovirus B Picornaviridae 43086 0.034048 0.020178
9626735_82 Human rhinovirus B Picornaviridae 3896 0.003079 0.020178
46633 Human echovirus 1 s=0.014471 p=0.142302
21363125_2 Human echovirus 1 Picornaviridae 7622 0.006023 0.016623
9632987_14_rc Human coxsackievirus B2 Picornaviridae 6167 0.004873 0.011800
9627719_14_rc Human enterovirus A Picornaviridae 4872 0.003850 0.007800
9632987_1_rc Human coxsackievirus B2 Picornaviridae 2094 0.001655 0.011746
9632987_20_rc Human coxsackievirus B2 Picornaviridae 4112 0.003249 0.003362
123738 Enterovirus Yanbian 96-83csf s=0.013974 p=0.145027
21363125_2 Human echovirus 1 Picornaviridae 7622 0.006023 0.011270
9632987_14_rc Human coxsackievirus B2 Picornaviridae 6167 0.004873 0.012676
9627719_14_rc Human enterovirus A Picornaviridae 4872 0.003850 0.010612
9632987_1_rc Human coxsackievirus B2 Picornaviridae 2094 0.001655 0.013205
9635432_20 Human coxsackievirus A9 Picornaviridae 1830 0.001446 0.008756
106966 Porcine enterovirus B s=0.011374 p=0.157533
9629634_282_rc Porcine enterovirus B Picornaviridae 7115 0.005623 0.023745
9629634_9_rc Porcine enterovirus B Picornaviridae 2988 0.002361 0.026943
9632987_14_rc Human coxsackievirus B2 Picornaviridae 6167 0.004873 0.005843
9632987_1_rc Human coxsackievirus B2 Picornaviridae 2094 0.001655 0.015819
9629634_247_rc Porcine enterovirus B Picornaviridae 761 0.000601 0.026051
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.009649 p=0.034147
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 7180 0.005674 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 803 0.000635 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 695 0.000549 0.055619
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 712 0.000563 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 411 0.000325 0.041460
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.001749 p=0.853169
9625671_3108 Human herpesvirus 5 Herpesviridae 1339 0.001058 0.005138
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 1059 0.000837 0.004454
9625671_3107 Human herpesvirus 5 Herpesviridae 799 0.000631 0.005685
HCMVUL125_14 Human herpesvirus 5 Herpesviridae 242 0.000191 0.003820
HCMVUL48_62 Human herpesvirus 5 Herpesviridae 159 0.000126 0.005077
188763 Chimpanzee cytomegalovirus s=0.001747 p=0.782647
9625671_3107 Human herpesvirus 5 Herpesviridae 799 0.000631 0.019411
9625671_3108 Human herpesvirus 5 Herpesviridae 1339 0.001058 0.011401
HCMVUL71_53 Human herpesvirus 5 Herpesviridae 1059 0.000837 0.004062
9625671_6538_rc Human herpesvirus 5 Herpesviridae 69 0.000055 0.015225
EBV_5024_rc Human herpesvirus 4 Herpesviridae 332 0.000262 0.002069
Family: Siphoviridae
151534 Bacteriophage bIL311 s=0.001406 p=0.261291
13095658_419_rc Bacteriophage bIL311 Siphoviridae 645 0.000510 0.068105
13095658_493_rc Bacteriophage bIL311 Siphoviridae 334 0.000264 0.067644
13095658_513_rc Bacteriophage bIL311 Siphoviridae 106 0.000084 0.063269
13095658_502_rc Bacteriophage bIL311 Siphoviridae 22 0.000017 0.077652
13095658_515_rc Bacteriophage bIL311 Siphoviridae 17 0.000013 0.076833
Family: NA
141860 Grapevine fanleaf virus satellite RNA s=0.001107 p=0.463270
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 422 0.000333 0.061403
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 195 0.000154 0.071992
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 204 0.000161 0.067655
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 44 0.000035 0.060503
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 35 0.000028 0.072605
Family: Adenoviridae
130309 Human adenovirus F s=0.000855 p=0.843934
9626553_810_rc Human adenovirus F Adenoviridae 221 0.000175 0.031338
9626553_717_rc Human adenovirus F Adenoviridae 173 0.000137 0.033578
9626187_866_rc Human adenovirus type 5 Adenoviridae 181 0.000143 0.013013
9626553_717 Human adenovirus F Adenoviridae 42 0.000033 0.033578
9626553_793_rc Human adenovirus F Adenoviridae 51 0.000040 0.024888
GSM40849
EPREDICT : 2007-03-28 15:06:58 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40849
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40849:GSM40849
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.628085 p=0.000001
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 47279 0.051179 0.035142
9626069_350_P70_rc Human papillomavirus type 18 Papillomaviridae 28303 0.030638 0.035901
9626069_263 Human papillomavirus type 18 Papillomaviridae 23449 0.025383 0.031664
9626069_80 Human papillomavirus type 18 Papillomaviridae 21049 0.022785 0.030247
9626069_291_P70_rc Human papillomavirus type 18 Papillomaviridae 17162 0.018578 0.033850
10593 Human papillomavirus type 45 s=0.220595 p=0.000165
9627356_269 Human papillomavirus type 45 Papillomaviridae 26328 0.028500 0.030872
9626069_269 Human papillomavirus type 18 Papillomaviridae 19105 0.020681 0.012905
9626069_291_P70_rc Human papillomavirus type 18 Papillomaviridae 17162 0.018578 0.014299
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 47279 0.051179 0.004794
9626069_80 Human papillomavirus type 18 Papillomaviridae 21049 0.022785 0.006910
37115 Human papillomavirus type 59 s=0.068534 p=0.000232
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 10800 0.011691 0.030317
9627962_252_rc Human papillomavirus type 59 Papillomaviridae 5672 0.006140 0.051293
9627962_252 Human papillomavirus type 59 Papillomaviridae 5485 0.005937 0.051293
9626069_81 Human papillomavirus type 18 Papillomaviridae 11098 0.012013 0.007122
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 8270 0.008952 0.007122
10580 Human papillomavirus type 11 s=0.067737 p=0.001241
9627090_269 Human papillomavirus type 11 Papillomaviridae 5005 0.005418 0.037951
9626069_263 Human papillomavirus type 18 Papillomaviridae 23449 0.025383 0.004557
9628412_270 Human papillomavirus type 6a Papillomaviridae 6096 0.006599 0.016010
9627356_269 Human papillomavirus type 45 Papillomaviridae 26328 0.028500 0.003645
9627118_263 Human papillomavirus type 33 Papillomaviridae 9782 0.010589 0.005486
37112 Human papillomavirus type 29 s=0.055012 p=0.004035
9628502_277 Human papillomavirus type 29 Papillomaviridae 9493 0.010276 0.031523
9626069_269 Human papillomavirus type 18 Papillomaviridae 19105 0.020681 0.006067
9627356_269 Human papillomavirus type 45 Papillomaviridae 26328 0.028500 0.004072
9626069_269_rc Human papillomavirus type 18 Papillomaviridae 7086 0.007670 0.006067
13128941_271 Human papillomavirus type 84 Papillomaviridae 1982 0.002145 0.007948
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.024749 p=0.073994
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 3729 0.004037 0.091863
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 2043 0.002212 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 2252 0.002438 0.006175
12084824_5205 Meleagrid herpesvirus 1 Herpesviridae 77 0.000083 0.091863
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 752 0.000814 0.006175
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.022770 p=0.062908
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 1755 0.001900 0.228244
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 998 0.001080 0.255549
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 1144 0.001238 0.130329
16507983_187 Human endogenous retrovirus K115 Retroviridae 720 0.000779 0.130329
16507983_164 Human endogenous retrovirus K115 Retroviridae 142 0.000154 0.255549
Family: NA
12475 Hepatitis delta virus s=0.013003 p=0.173476
13277517_1201_P70 Hepatitis delta virus Deltavirus 1745 0.001889 0.050159
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 994 0.001076 0.051728
13277517_1511_P70 Hepatitis delta virus Deltavirus 673 0.000729 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 598 0.000647 0.051914
13277517_51 Hepatitis delta virus Deltavirus 389 0.000421 0.054173
53010 Cotton leaf curl virus s=0.011368 p=0.287857
16507262_57 Cotton leaf curl virus Geminiviridae 795 0.000861 0.014580
21165975_58 Tomato leaf curl Bangalore virus Geminiviridae 693 0.000750 0.005807
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 679 0.000735 0.005642
21218470_68_rc Tomato leaf curl Karnataka virus Geminiviridae 437 0.000473 0.007122
20564201_53 Tomato golden mottle geminivirus Geminiviridae 718 0.000777 0.002815
Family: Picornaviridae
12124 Theilovirus s=0.010900 p=0.057126
9626123_206 Theiler's encephalomyelitis virus Picornaviridae 3732 0.004040 0.050519
9626123_31_rc Theiler's encephalomyelitis virus Picornaviridae 135 0.000146 0.071154
9626123_74_rc Theiler's encephalomyelitis virus Picornaviridae 114 0.000123 0.066889
9626123_74 Theiler's encephalomyelitis virus Picornaviridae 91 0.000099 0.066889
9626123_108 Theiler's encephalomyelitis virus Picornaviridae 56 0.000061 0.074408
Family: Parvoviridae
46350 Adeno-associated virus 3 s=0.010432 p=0.211133
9628918_55_rc Adeno-associated virus 3 Parvoviridae 649 0.000703 0.027614
9629897_55_rc Adeno-associated virus 3B Parvoviridae 632 0.000684 0.027470
9628918_115 Adeno-associated virus 3 Parvoviridae 538 0.000582 0.026431
9629641_57_rc Adeno-associated virus 4 Parvoviridae 686 0.000743 0.020288
9629894_55_rc Adeno-associated virus 6 Parvoviridae 349 0.000378 0.023876
Iteration: 2
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.057804 p=0.025163
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 3729 0.006406 0.091863
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 2043 0.003510 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 2252 0.003869 0.006175
12084824_5205 Meleagrid herpesvirus 1 Herpesviridae 77 0.000132 0.091863
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 752 0.001292 0.006175
Family: Retroviridae
166123 Human endogenous retrovirus K s=0.053198 p=0.024291
16507983_244_rc Human endogenous retrovirus K115 Retroviridae 1755 0.003015 0.228244
16507983_164_rc Human endogenous retrovirus K115 Retroviridae 998 0.001715 0.255549
16507983_187_rc Human endogenous retrovirus K115 Retroviridae 1144 0.001965 0.130329
16507983_187 Human endogenous retrovirus K115 Retroviridae 720 0.001237 0.130329
16507983_164 Human endogenous retrovirus K115 Retroviridae 142 0.000244 0.255549
Family: Papillomaviridae
10609 Human papillomavirus type 25 s=0.040331 p=0.023941
9627298_177 Human papillomavirus type 25 Papillomaviridae 5524 0.009490 0.029232
9627396_171 Human papillomavirus type 9 Papillomaviridae 2151 0.003695 0.005046
9627298_177_rc Human papillomavirus type 25 Papillomaviridae 175 0.000301 0.029232
9627298_108_rc Human papillomavirus type 25 Papillomaviridae 51 0.000088 0.036776
9627396_171_rc Human papillomavirus type 9 Papillomaviridae 275 0.000472 0.005046
10621 Human papillomavirus type 9 s=0.031626 p=0.028961
9627396_171 Human papillomavirus type 9 Papillomaviridae 2151 0.003695 0.058079
9627298_177 Human papillomavirus type 25 Papillomaviridae 5524 0.009490 0.007546
9627396_171_rc Human papillomavirus type 9 Papillomaviridae 275 0.000472 0.058079
9627277_105_rc Human papillomavirus type 15 Papillomaviridae 355 0.000610 0.015062
9627277_169 Human papillomavirus type 15 Papillomaviridae 602 0.001034 0.005176
Family: NA
12475 Hepatitis delta virus s=0.030374 p=0.063732
13277517_1201_P70 Hepatitis delta virus Deltavirus 1745 0.002998 0.050159
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 994 0.001708 0.051728
13277517_1511_P70 Hepatitis delta virus Deltavirus 673 0.001156 0.051728
13277517_1255_P70 Hepatitis delta virus Deltavirus 598 0.001027 0.051914
13277517_51 Hepatitis delta virus Deltavirus 389 0.000668 0.054173
53010 Cotton leaf curl virus s=0.026562 p=0.121233
16507262_57 Cotton leaf curl virus Geminiviridae 795 0.001366 0.014580
21165975_58 Tomato leaf curl Bangalore virus Geminiviridae 693 0.001191 0.005807
21911434_94_rc Cotton leaf curl Gezira virus-[Okra/ Geminiviridae 679 0.001166 0.005642
21218470_68_rc Tomato leaf curl Karnataka virus Geminiviridae 437 0.000751 0.007122
20564201_53 Tomato golden mottle geminivirus Geminiviridae 718 0.001233 0.002815
Family: Picornaviridae
12124 Theilovirus s=0.025463 p=0.010853
9626123_206 Theiler's encephalomyelitis virus Picornaviridae 3732 0.006411 0.050519
9626123_31_rc Theiler's encephalomyelitis virus Picornaviridae 135 0.000232 0.071154
9626123_74_rc Theiler's encephalomyelitis virus Picornaviridae 114 0.000196 0.066889
9626123_74 Theiler's encephalomyelitis virus Picornaviridae 91 0.000156 0.066889
9626123_108 Theiler's encephalomyelitis virus Picornaviridae 56 0.000096 0.074408
Family: Parvoviridae
46350 Adeno-associated virus 3 s=0.024372 p=0.077293
9628918_55_rc Adeno-associated virus 3 Parvoviridae 649 0.001115 0.027614
9629897_55_rc Adeno-associated virus 3B Parvoviridae 632 0.001086 0.027470
9628918_115 Adeno-associated virus 3 Parvoviridae 538 0.000924 0.026431
9629641_57_rc Adeno-associated virus 4 Parvoviridae 686 0.001179 0.020288
9629894_55_rc Adeno-associated virus 6 Parvoviridae 349 0.000600 0.023876
GSM40850
EPREDICT : 2007-03-28 15:11:05 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40850
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40850:GSM40850
Iteration: 1
Family: Orthomyxoviridae
11320 Influenza A virus s=0.308137 p=0.000001
8486129_20_rc Influenza A virus Orthomyxoviridae 27171 0.054291 0.073178
8486125_68 Influenza A virus Orthomyxoviridae 23836 0.047627 0.059903
8486129_56 Influenza A virus Orthomyxoviridae 18853 0.037670 0.073726
8486125_53 Influenza A virus Orthomyxoviridae 29735 0.059414 0.036078
8486129_38 Influenza A virus Orthomyxoviridae 12631 0.025238 0.066505
183764 Influenza A virus s=0.303550 p=0.000001
8486129_20_rc Influenza A virus Orthomyxoviridae 27171 0.054291 0.061872
8486125_68 Influenza A virus Orthomyxoviridae 23836 0.047627 0.061490
8486129_56 Influenza A virus Orthomyxoviridae 18853 0.037670 0.075679
8486125_53 Influenza A virus Orthomyxoviridae 29735 0.059414 0.037033
8486129_38 Influenza A virus Orthomyxoviridae 12631 0.025238 0.068267
130760 Influenza A virus s=0.181433 p=0.000030
8486129_56 Influenza A virus Orthomyxoviridae 18853 0.037670 0.207068
8486129_59 Influenza A virus Orthomyxoviridae 8791 0.017565 0.161429
8486129_56_rc Influenza A virus Orthomyxoviridae 5061 0.010112 0.207068
8486129_2_rc Influenza A virus Orthomyxoviridae 6624 0.013235 0.070929
8486129_59_rc Influenza A virus Orthomyxoviridae 2261 0.004518 0.161429
Family: Siphoviridae
103807 Bacteriophage P27 s=0.006751 p=0.005233
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.003209 0.102483
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.003001 0.015868
18249864_695 Bacteriophage P27 Siphoviridae 134 0.000268 0.093832
18249864_688 Bacteriophage P27 Siphoviridae 93 0.000186 0.102483
18249864_719_rc Bacteriophage P27 Siphoviridae 23 0.000046 0.080369
194949 Stx2 converting bacteriophage II s=0.004799 p=0.274713
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.003209 0.019413
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.003001 0.003247
9634119_1372 Enterobacteria phage HK022 Siphoviridae 651 0.001301 0.005772
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 148 0.000296 0.018052
9634119_1372_rc Enterobacteria phage HK022 Siphoviridae 428 0.000855 0.005772
97081 Bacteriophage VT2-Sa s=0.004799 p=0.274713
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.003209 0.019413
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.003001 0.003247
9634119_1372 Enterobacteria phage HK022 Siphoviridae 651 0.001301 0.005772
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 148 0.000296 0.018052
9634119_1372_rc Enterobacteria phage HK022 Siphoviridae 428 0.000855 0.005772
10730 Bacteriophage 933W s=0.004691 p=0.266650
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.003209 0.021659
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.003001 0.003623
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 148 0.000296 0.020141
18249864_688 Bacteriophage P27 Siphoviridae 93 0.000186 0.021659
18249864_695 Bacteriophage P27 Siphoviridae 134 0.000268 0.014168
180816 Stx2 converting bacteriophage I s=0.004573 p=0.273838
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.003209 0.020471
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.003001 0.003424
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 148 0.000296 0.019037
18249864_688 Bacteriophage P27 Siphoviridae 93 0.000186 0.020471
18249864_695 Bacteriophage P27 Siphoviridae 134 0.000268 0.013391
Family: Flaviviridae
54290 GB virus C/Hepatitis G virus s=0.003976 p=0.283968
9635434_180 GB virus C/Hepatitis G virus Flaviviridae 1608 0.003213 0.038562
9628705_181 GB virus C/Hepatitis G virus Flaviviridae 475 0.000949 0.044819
9635434_313_rc GB virus C/Hepatitis G virus Flaviviridae 164 0.000328 0.066668
9635434_189 GB virus C/Hepatitis G virus Flaviviridae 30 0.000060 0.043468
9635434_305 GB virus C/Hepatitis G virus Flaviviridae 29 0.000058 0.040728
Family: Retroviridae
33748 Primate T-lymphotropic virus 2 s=0.003663 p=0.532464
9629498_118 Simian T-lymphotropic virus 2 Retroviridae 834 0.001666 0.054274
9632565_301_rc Simian T-lymphotropic virus 1 Retroviridae 257 0.000514 0.025993
9626726_296_rc Human T-lymphotropic virus 2 Retroviridae 107 0.000214 0.043137
9629498_292_rc Simian T-lymphotropic virus 2 Retroviridae 67 0.000134 0.065223
9626726_296 Human T-lymphotropic virus 2 Retroviridae 56 0.000112 0.043137
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.003325 p=0.712552
9625671_3138 Human herpesvirus 5 Herpesviridae 362 0.000723 0.004744
9625671_3138_rc Human herpesvirus 5 Herpesviridae 283 0.000565 0.004744
9625671_3137 Human herpesvirus 5 Herpesviridae 150 0.000300 0.004922
HCMVUL97_0 Human herpesvirus 5 Herpesviridae 123 0.000246 0.005851
HCMVUS16_105 Human herpesvirus 5 Herpesviridae 86 0.000172 0.005421
Family: Picornaviridae
147711 Human rhinovirus A s=0.002845 p=0.760806
9627730_117 Human rhinovirus A Picornaviridae 1105 0.002208 0.014170
9627730_43 Human rhinovirus A Picornaviridae 186 0.000372 0.015015
9627730_3_rc Human rhinovirus A Picornaviridae 148 0.000296 0.015446
9627730_158 Human rhinovirus A Picornaviridae 98 0.000196 0.017696
9627730_25_rc Human rhinovirus A Picornaviridae 90 0.000180 0.014831
Iteration: 2
Family: Siphoviridae
103807 Bacteriophage P27 s=0.007744 p=0.003689
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.004458 0.102483
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.004169 0.015868
18249864_695 Bacteriophage P27 Siphoviridae 134 0.000372 0.093832
18249864_688 Bacteriophage P27 Siphoviridae 93 0.000258 0.102483
18249864_719_rc Bacteriophage P27 Siphoviridae 23 0.000064 0.080369
194949 Stx2 converting bacteriophage II s=0.005504 p=0.238098
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.004458 0.019413
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.004169 0.003247
9634119_1372 Enterobacteria phage HK022 Siphoviridae 651 0.001807 0.005772
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 148 0.000411 0.018052
9634119_1372_rc Enterobacteria phage HK022 Siphoviridae 428 0.001188 0.005772
97081 Bacteriophage VT2-Sa s=0.005504 p=0.238098
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.004458 0.019413
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.004169 0.003247
9634119_1372 Enterobacteria phage HK022 Siphoviridae 651 0.001807 0.005772
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 148 0.000411 0.018052
9634119_1372_rc Enterobacteria phage HK022 Siphoviridae 428 0.001188 0.005772
10730 Bacteriophage 933W s=0.005380 p=0.231052
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.004458 0.021659
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.004169 0.003623
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 148 0.000411 0.020141
18249864_688 Bacteriophage P27 Siphoviridae 93 0.000258 0.021659
18249864_695 Bacteriophage P27 Siphoviridae 134 0.000372 0.014168
180816 Stx2 converting bacteriophage I s=0.005244 p=0.237750
18249864_688_rc Bacteriophage P27 Siphoviridae 1606 0.004458 0.020471
9634055_840 Enterobacteria phage 186 Myoviridae 1502 0.004169 0.003424
20065797_1890 Stx2 converting bacteriophage I Siphoviridae 148 0.000411 0.019037
18249864_688 Bacteriophage P27 Siphoviridae 93 0.000258 0.020471
18249864_695 Bacteriophage P27 Siphoviridae 134 0.000372 0.013391
Family: Flaviviridae
54290 GB virus C/Hepatitis G virus s=0.004559 p=0.251877
9635434_180 GB virus C/Hepatitis G virus Flaviviridae 1608 0.004463 0.038562
9628705_181 GB virus C/Hepatitis G virus Flaviviridae 475 0.001318 0.044819
9635434_313_rc GB virus C/Hepatitis G virus Flaviviridae 164 0.000455 0.066668
9635434_189 GB virus C/Hepatitis G virus Flaviviridae 30 0.000083 0.043468
9635434_305 GB virus C/Hepatitis G virus Flaviviridae 29 0.000080 0.040728
Family: Retroviridae
33748 Primate T-lymphotropic virus 2 s=0.004201 p=0.493358
9629498_118 Simian T-lymphotropic virus 2 Retroviridae 834 0.002315 0.054274
9632565_301_rc Simian T-lymphotropic virus 1 Retroviridae 257 0.000713 0.025993
9626726_296_rc Human T-lymphotropic virus 2 Retroviridae 107 0.000297 0.043137
9629498_292_rc Simian T-lymphotropic virus 2 Retroviridae 67 0.000186 0.065223
9626726_296 Human T-lymphotropic virus 2 Retroviridae 56 0.000155 0.043137
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.003811 p=0.676150
9625671_3138 Human herpesvirus 5 Herpesviridae 362 0.001005 0.004744
9625671_3138_rc Human herpesvirus 5 Herpesviridae 283 0.000786 0.004744
9625671_3137 Human herpesvirus 5 Herpesviridae 150 0.000416 0.004922
HCMVUL97_0 Human herpesvirus 5 Herpesviridae 123 0.000341 0.005851
HCMVUS16_105 Human herpesvirus 5 Herpesviridae 86 0.000239 0.005421
Family: Picornaviridae
147711 Human rhinovirus A s=0.003263 p=0.729210
9627730_117 Human rhinovirus A Picornaviridae 1105 0.003067 0.014170
9627730_43 Human rhinovirus A Picornaviridae 186 0.000516 0.015015
9627730_3_rc Human rhinovirus A Picornaviridae 148 0.000411 0.015446
9627730_158 Human rhinovirus A Picornaviridae 98 0.000272 0.017696
9627730_25_rc Human rhinovirus A Picornaviridae 90 0.000250 0.014831
Family: Baculoviridae
74660 Choristoneura fumiferana defective nucle s=0.003107 p=0.317190
14602241_1310_rc Cydia pomonella granulovirus Baculoviridae 1839 0.005105 0.013783
11038431_4103_rc Orgyia pseudotsugata single capsid n Baculoviridae 87 0.000241 0.018875
14602241_1310 Cydia pomonella granulovirus Baculoviridae 109 0.000303 0.013783
9627742_4787_rc Autographa californica nucleopolyhed Baculoviridae 37 0.000103 0.038548
15617474_1517_rc Spodoptera litura nucleopolyhedrovir Baculoviridae 119 0.000330 0.008681
GSM40851
EPREDICT : 2007-03-28 15:13:22 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40851
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40851:GSM40851
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.352781 p=0.002946
9627730_13_rc Human rhinovirus A Picornaviridae 65446 0.012417 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65448 0.012418 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65449 0.012418 0.019466
9627730_16_rc Human rhinovirus A Picornaviridae 65458 0.012420 0.018468
9627730_22_rc Human rhinovirus A Picornaviridae 65458 0.012420 0.016616
12090 Human enterovirus D s=0.186509 p=0.000144
9626436_18_rc Human enterovirus 70 Picornaviridae 65456 0.012419 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65460 0.012420 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65443 0.012417 0.018469
12408699_21_rc Poliovirus Picornaviridae 65461 0.012420 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65460 0.012420 0.014212
138950 Human enterovirus C s=0.183783 p=0.000161
9626433_19_rc Human enterovirus C Picornaviridae 65460 0.012420 0.030944
9626433_17_rc Human enterovirus C Picornaviridae 65443 0.012417 0.029244
9626436_21_rc Human enterovirus 70 Picornaviridae 65460 0.012420 0.017668
9626436_18_rc Human enterovirus 70 Picornaviridae 65456 0.012419 0.015432
12408699_21_rc Poliovirus Picornaviridae 65461 0.012420 0.010914
123738 Enterovirus Yanbian 96-83csf s=0.179639 p=0.000410
9627719_18_rc Human enterovirus A Picornaviridae 65435 0.012415 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 65442 0.012417 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65455 0.012419 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65450 0.012418 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65415 0.012412 0.012615
169066 Human rhinovirus sp. s=0.166257 p=0.000010
61098_58_rc Human rhinovirus sp. Picornaviridae 65461 0.012420 0.036984
61098_276 Human rhinovirus sp. Picornaviridae 59289 0.011249 0.037355
61098_131 Human rhinovirus sp. Picornaviridae 52119 0.009889 0.032392
61098_178 Human rhinovirus sp. Picornaviridae 36994 0.007019 0.034722
61098_187 Human rhinovirus sp. Picornaviridae 33857 0.006424 0.036614
Family: NA
89463 Sacbrood virus s=0.015439 p=0.009821
9632405_343_rc Sacbrood virus Iflavirus 29575 0.005611 0.063762
9632405_345_rc Sacbrood virus Iflavirus 223 0.000042 0.061405
9632405_343 Sacbrood virus Iflavirus 197 0.000037 0.063762
9632405_347_rc Sacbrood virus Iflavirus 133 0.000025 0.049549
9632405_345 Sacbrood virus Iflavirus 80 0.000015 0.061405
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.006208 p=0.078696
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 12496 0.002371 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 915 0.000174 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 411 0.000078 0.052060
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 335 0.000064 0.055619
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 196 0.000037 0.041460
Family: Herpesviridae
10326 Equine herpesvirus 1 s=0.001482 p=0.613190
9633069_4686 Human herpesvirus 6B Herpesviridae 45935 0.008716 0.002709
9629732_5440 Equid herpesvirus 4 Herpesviridae 493 0.000094 0.006835
9629732_5441 Equid herpesvirus 4 Herpesviridae 200 0.000038 0.006056
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 383 0.000073 0.002657
9626737_4130 Equid herpesvirus 1 Herpesviridae 28 0.000005 0.037880
10376 Human herpesvirus 4 s=0.001357 p=0.816240
EBV_4323_rc Human herpesvirus 4 Herpesviridae 2716 0.000515 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1096 0.000208 0.013853
9625578_4323_rc Human herpesvirus 4 Herpesviridae 395 0.000075 0.016287
EBV_4535_rc Human herpesvirus 4 Herpesviridae 99 0.000019 0.017003
EBV_6200_rc Human herpesvirus 4 Herpesviridae 104 0.000020 0.014928
Family: Siphoviridae
28369 Mycobacteriophage D29 s=0.001031 p=0.555439
9625433_791 Mycobacterium phage L5 Siphoviridae 3010 0.000571 0.028567
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 920 0.000175 0.021080
9630386_514 Mycobacteriophage D29 Siphoviridae 14 0.000003 0.048491
12657854_478_rc Mycobacteriophage Bxb1 Siphoviridae 44 0.000008 0.013840
9630386_496_rc Mycobacteriophage D29 Siphoviridae 11 0.000002 0.051065
Family: Adenoviridae
130308 Human adenovirus E s=0.000783 p=0.868425
9626553_717_rc Human adenovirus F Adenoviridae 2090 0.000397 0.017795
9626553_810_rc Human adenovirus F Adenoviridae 404 0.000077 0.004031
9632407_786 Human adenovirus D Adenoviridae 68 0.000013 0.013186
9626187_866_rc Human adenovirus type 5 Adenoviridae 79 0.000015 0.008927
9632407_774_rc Human adenovirus D Adenoviridae 32 0.000006 0.018605
Iteration: 2
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.226171 p=0.000003
61098_58_rc Human rhinovirus sp. Picornaviridae 65461 0.043461 0.036984
61098_276 Human rhinovirus sp. Picornaviridae 59289 0.039363 0.037355
61098_131 Human rhinovirus sp. Picornaviridae 52119 0.034603 0.032392
61098_178 Human rhinovirus sp. Picornaviridae 36994 0.024561 0.034722
61098_187 Human rhinovirus sp. Picornaviridae 33857 0.022478 0.036614
147712 Human rhinovirus B s=0.123251 p=0.000662
9626735_14_rc Human rhinovirus B Picornaviridae 64552 0.042857 0.024898
9626735_20_rc Human rhinovirus B Picornaviridae 65450 0.043453 0.021059
9626735_43_rc Human rhinovirus B Picornaviridae 65460 0.043460 0.019689
9626735_3 Human rhinovirus B Picornaviridae 855 0.000568 0.019131
9626735_43 Human rhinovirus B Picornaviridae 369 0.000245 0.019689
138950 Human enterovirus C s=0.068836 p=0.003040
9626433_19_rc Human enterovirus C Picornaviridae 65460 0.043460 0.030944
9626433_50_rc Human enterovirus C Picornaviridae 11378 0.007554 0.028439
21363125_2 Human echovirus 1 Picornaviridae 30529 0.020269 0.002871
9632987_14_rc Human coxsackievirus B2 Picornaviridae 13780 0.009149 0.002888
9632987_20_rc Human coxsackievirus B2 Picornaviridae 5584 0.003707 0.003273
123738 Enterovirus Yanbian 96-83csf s=0.033014 p=0.033752
21363125_2 Human echovirus 1 Picornaviridae 30529 0.020269 0.011270
9626433_19_rc Human enterovirus C Picornaviridae 65460 0.043460 0.002674
9632987_14_rc Human coxsackievirus B2 Picornaviridae 13780 0.009149 0.012676
9632987_1_rc Human coxsackievirus B2 Picornaviridae 2824 0.001875 0.013205
9627719_14_rc Human enterovirus A Picornaviridae 3265 0.002168 0.010612
Family: NA
89463 Sacbrood virus s=0.031614 p=0.001464
9632405_343_rc Sacbrood virus Iflavirus 29575 0.019635 0.063762
9632405_345_rc Sacbrood virus Iflavirus 223 0.000148 0.061405
9632405_343 Sacbrood virus Iflavirus 197 0.000131 0.063762
9632405_347_rc Sacbrood virus Iflavirus 133 0.000088 0.049549
9632405_345 Sacbrood virus Iflavirus 80 0.000053 0.061405
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.012710 p=0.018823
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 12496 0.008296 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 915 0.000607 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 411 0.000273 0.052060
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 335 0.000222 0.055619
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 196 0.000130 0.041460
Family: Herpesviridae
10326 Equine herpesvirus 1 s=0.003042 p=0.398641
9633069_4686 Human herpesvirus 6B Herpesviridae 45935 0.030497 0.002709
9629732_5440 Equid herpesvirus 4 Herpesviridae 493 0.000327 0.006835
9629732_5441 Equid herpesvirus 4 Herpesviridae 200 0.000133 0.006056
9626737_4130 Equid herpesvirus 1 Herpesviridae 28 0.000019 0.037880
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 383 0.000254 0.002657
10376 Human herpesvirus 4 s=0.002775 p=0.624799
EBV_4323_rc Human herpesvirus 4 Herpesviridae 2716 0.001803 0.016287
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1096 0.000728 0.013853
9625578_4323_rc Human herpesvirus 4 Herpesviridae 395 0.000262 0.016287
EBV_4535_rc Human herpesvirus 4 Herpesviridae 99 0.000066 0.017003
EBV_6200_rc Human herpesvirus 4 Herpesviridae 104 0.000069 0.014928
Family: Siphoviridae
28369 Mycobacteriophage D29 s=0.002109 p=0.294521
9625433_791 Mycobacterium phage L5 Siphoviridae 3010 0.001999 0.028567
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 920 0.000611 0.021080
9630386_514 Mycobacteriophage D29 Siphoviridae 14 0.000009 0.048491
12657854_478_rc Mycobacteriophage Bxb1 Siphoviridae 44 0.000029 0.013840
22091104_693 Virus PhiCh1 Myoviridae 166 0.000110 0.003287
Family: Adenoviridae
130308 Human adenovirus E s=0.001603 p=0.689771
9626553_717_rc Human adenovirus F Adenoviridae 2090 0.001388 0.017795
9626553_810_rc Human adenovirus F Adenoviridae 404 0.000268 0.004031
9632407_786 Human adenovirus D Adenoviridae 68 0.000045 0.013186
9626187_866_rc Human adenovirus type 5 Adenoviridae 79 0.000052 0.008927
9632407_774_rc Human adenovirus D Adenoviridae 32 0.000021 0.018605
GSM40852
EPREDICT : 2007-03-28 15:15:18 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40852
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40852:GSM40852
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.251743 p=0.000025
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 23250 0.051458 0.035142
9626069_350_P70_rc Human papillomavirus type 18 Papillomaviridae 15284 0.033827 0.035901
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 12306 0.027236 0.036179
9626069_80 Human papillomavirus type 18 Papillomaviridae 6747 0.014933 0.030247
9626069_350_P70 Human papillomavirus type 18 Papillomaviridae 3669 0.008120 0.035901
10593 Human papillomavirus type 45 s=0.081435 p=0.002455
9627356_269 Human papillomavirus type 45 Papillomaviridae 8059 0.017836 0.030872
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 12306 0.027236 0.009866
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 23250 0.051458 0.004794
9627356_269_rc Human papillomavirus type 45 Papillomaviridae 1650 0.003652 0.030872
9626069_80 Human papillomavirus type 18 Papillomaviridae 6747 0.014933 0.006910
10580 Human papillomavirus type 11 s=0.032301 p=0.007892
9627090_269 Human papillomavirus type 11 Papillomaviridae 1919 0.004247 0.037951
9633484_270 Human papillomavirus type 6 Papillomaviridae 2720 0.006020 0.016010
9628412_270 Human papillomavirus type 6a Papillomaviridae 2328 0.005152 0.016010
9627118_263 Human papillomavirus type 33 Papillomaviridae 5999 0.013277 0.005486
9627356_269 Human papillomavirus type 45 Papillomaviridae 8059 0.017836 0.003645
10600 Human papillomavirus type 6b s=0.028015 p=0.008772
9633484_270 Human papillomavirus type 6 Papillomaviridae 2720 0.006020 0.023735
9628412_270 Human papillomavirus type 6a Papillomaviridae 2328 0.005152 0.023735
9626053_270 Human papillomavirus type 6b Papillomaviridae 1829 0.004048 0.023639
9627118_263 Human papillomavirus type 33 Papillomaviridae 5999 0.013277 0.007028
9627090_269 Human papillomavirus type 11 Papillomaviridae 1919 0.004247 0.005745
37122 Human papillomavirus type 6a s=0.027936 p=0.010789
9633484_270 Human papillomavirus type 6 Papillomaviridae 2720 0.006020 0.023541
9628412_270 Human papillomavirus type 6a Papillomaviridae 2328 0.005152 0.023541
9626053_270 Human papillomavirus type 6b Papillomaviridae 1829 0.004048 0.023446
9627118_263 Human papillomavirus type 33 Papillomaviridae 5999 0.013277 0.006971
9627090_269 Human papillomavirus type 11 Papillomaviridae 1919 0.004247 0.005698
Family: NA
207697 Croton yellow vein mosaic virus s=0.008135 p=0.330488
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.000881 0.009546
21218470_58 Tomato leaf curl Karnataka virus Geminiviridae 321 0.000710 0.009977
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.000998 0.007085
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.000748 0.007716
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.000737 0.007716
161378 Sri Lankan cassava mosaic virus s=0.007588 p=0.312340
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.000748 0.018005
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.000737 0.018005
9630671_66 Indian cassava mosaic virus Geminiviridae 259 0.000573 0.017579
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.000881 0.007937
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.000998 0.007003
222464 Cotton leaf curl Kokhran virus s=0.007581 p=0.396983
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.000881 0.007528
21218470_58 Tomato leaf curl Karnataka virus Geminiviridae 321 0.000710 0.009300
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.000998 0.006342
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.000748 0.006085
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.000737 0.006085
53010 Cotton leaf curl virus s=0.007443 p=0.399113
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.000998 0.014580
16507262_57_rc Cotton leaf curl virus Geminiviridae 210 0.000465 0.014580
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.000881 0.006651
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.000748 0.006248
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.000737 0.006248
223252 Cotton leaf curl Multan virus s=0.007319 p=0.392788
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.000998 0.015254
16507262_57_rc Cotton leaf curl virus Geminiviridae 210 0.000465 0.015254
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.000881 0.006959
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.000748 0.006537
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.000737 0.006537
Family: Herpesviridae
28304 Rat cytomegalovirus s=0.005785 p=0.389191
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 1138 0.002519 0.031290
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 362 0.000801 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 177 0.000392 0.032243
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 71 0.000157 0.027888
9629732_5440 Equid herpesvirus 4 Herpesviridae 551 0.001219 0.002030
79700 Rat cytomegalovirus s=0.005785 p=0.389191
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 1138 0.002519 0.031290
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 362 0.000801 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 177 0.000392 0.032243
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 71 0.000157 0.027888
9629732_5440 Equid herpesvirus 4 Herpesviridae 551 0.001219 0.002030
Family: Iridoviridae
160691 Rana tigrina ranavirus s=0.005185 p=0.202599
18767698_3529 Rana tigrina ranavirus Iridoviridae 654 0.001447 0.095284
18767698_3529_rc Rana tigrina ranavirus Iridoviridae 416 0.000921 0.095284
18767698_1037_rc Rana tigrina ranavirus Iridoviridae 168 0.000372 0.092625
18767698_1035 Rana tigrina ranavirus Iridoviridae 50 0.000111 0.095619
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 362 0.000801 0.007615
Family: Flaviviridae
64300 Modoc virus s=0.002394 p=0.296453
20177455_399_rc Modoc virus Flaviviridae 466 0.001031 0.085292
20177455_343_rc Modoc virus Flaviviridae 32 0.000071 0.086129
20177455_356_rc Modoc virus Flaviviridae 30 0.000066 0.083298
20177455_356 Modoc virus Flaviviridae 24 0.000053 0.083298
20177455_416 Modoc virus Flaviviridae 16 0.000035 0.095081
Family: Picornaviridae
12118 Foot-and-mouth disease virus O s=0.002393 p=0.573351
10092580_179_rc Foot-and-mouth disease virus O Picornaviridae 212 0.000469 0.032490
21426907_195_rc Foot-and-mouth disease virus O Picornaviridae 167 0.000370 0.036278
10092580_179 Foot-and-mouth disease virus O Picornaviridae 186 0.000412 0.032490
10092580_177_rc Foot-and-mouth disease virus O Picornaviridae 66 0.000146 0.042862
21426907_193_rc Foot-and-mouth disease virus O Picornaviridae 58 0.000128 0.043889
Iteration: 2
Family: NA
207697 Croton yellow vein mosaic virus s=0.008907 p=0.307811
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.001265 0.009546
21218470_58 Tomato leaf curl Karnataka virus Geminiviridae 321 0.001020 0.009977
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.001434 0.007085
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.001074 0.007716
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.001059 0.007716
161378 Sri Lankan cassava mosaic virus s=0.008309 p=0.290412
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.001074 0.018005
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.001059 0.018005
9630671_66 Indian cassava mosaic virus Geminiviridae 259 0.000823 0.017579
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.001434 0.007003
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.001265 0.007937
222464 Cotton leaf curl Kokhran virus s=0.008299 p=0.372278
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.001265 0.007528
21218470_58 Tomato leaf curl Karnataka virus Geminiviridae 321 0.001020 0.009300
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.001434 0.006342
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.001074 0.006085
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.001059 0.006085
53010 Cotton leaf curl virus s=0.008150 p=0.374188
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.001434 0.014580
16507262_57_rc Cotton leaf curl virus Geminiviridae 210 0.000668 0.014580
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.001265 0.006651
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.001074 0.006248
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.001059 0.006248
223252 Cotton leaf curl Multan virus s=0.008016 p=0.367870
16507262_57 Cotton leaf curl virus Geminiviridae 451 0.001434 0.015254
16507262_57_rc Cotton leaf curl virus Geminiviridae 210 0.000668 0.015254
20340272_57 Tobacco curly shoot virus Geminiviridae 398 0.001265 0.006959
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 338 0.001074 0.006537
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 333 0.001059 0.006537
Family: Herpesviridae
28304 Rat cytomegalovirus s=0.006334 p=0.363101
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 1138 0.003618 0.031290
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 362 0.001151 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 177 0.000563 0.032243
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 71 0.000226 0.027888
9629732_5440 Equid herpesvirus 4 Herpesviridae 551 0.001752 0.002030
79700 Rat cytomegalovirus s=0.006334 p=0.363101
9845300_5100 Rat cytomegalovirus Maastricht Herpesviridae 1138 0.003618 0.031290
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 362 0.001151 0.029061
9845300_4289 Rat cytomegalovirus Maastricht Herpesviridae 177 0.000563 0.032243
9845300_1012 Rat cytomegalovirus Maastricht Herpesviridae 71 0.000226 0.027888
9629732_5440 Equid herpesvirus 4 Herpesviridae 551 0.001752 0.002030
Family: Iridoviridae
160691 Rana tigrina ranavirus s=0.005674 p=0.184878
18767698_3529 Rana tigrina ranavirus Iridoviridae 654 0.002079 0.095284
18767698_3529_rc Rana tigrina ranavirus Iridoviridae 416 0.001322 0.095284
18767698_1037_rc Rana tigrina ranavirus Iridoviridae 168 0.000534 0.092625
18767698_1035 Rana tigrina ranavirus Iridoviridae 50 0.000159 0.095619
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 362 0.001151 0.007615
Family: Flaviviridae
64300 Modoc virus s=0.002622 p=0.273604
20177455_399_rc Modoc virus Flaviviridae 466 0.001481 0.085292
20177455_343_rc Modoc virus Flaviviridae 32 0.000102 0.086129
20177455_356_rc Modoc virus Flaviviridae 30 0.000095 0.083298
20177455_356 Modoc virus Flaviviridae 24 0.000076 0.083298
20177455_416 Modoc virus Flaviviridae 16 0.000051 0.095081
Family: Picornaviridae
12118 Foot-and-mouth disease virus O s=0.002619 p=0.548100
10092580_179_rc Foot-and-mouth disease virus O Picornaviridae 212 0.000674 0.032490
21426907_195_rc Foot-and-mouth disease virus O Picornaviridae 167 0.000531 0.036278
10092580_179 Foot-and-mouth disease virus O Picornaviridae 186 0.000591 0.032490
10092580_177_rc Foot-and-mouth disease virus O Picornaviridae 66 0.000210 0.042862
21426907_193_rc Foot-and-mouth disease virus O Picornaviridae 58 0.000184 0.043889
147711 Human rhinovirus A s=0.002404 p=0.796698
9627730_117 Human rhinovirus A Picornaviridae 250 0.000795 0.014170
4731888_25 Human rhinovirus sp. Picornaviridae 128 0.000407 0.008428
9627730_12_rc Human rhinovirus A Picornaviridae 38 0.000121 0.020705
9627730_141 Human rhinovirus A Picornaviridae 50 0.000159 0.015477
9627730_43 Human rhinovirus A Picornaviridae 50 0.000159 0.015015
46633 Human echovirus 1 s=0.002055 p=0.752910
9632295_15_rc Human coxsackievirus B6 Picornaviridae 172 0.000547 0.008780
9632295_15 Human coxsackievirus B6 Picornaviridae 140 0.000445 0.008780
21363125_286_rc Human echovirus 1 Picornaviridae 51 0.000162 0.020344
21363125_21 Human echovirus 1 Picornaviridae 40 0.000127 0.018603
11072117_182_rc Human echovirus 5 Picornaviridae 417 0.001326 0.001475
138953 Poliovirus s=0.001835 p=0.678967
9627043_199_rc Human poliovirus 3 Picornaviridae 222 0.000706 0.014761
12408699_197_rc Poliovirus Picornaviridae 66 0.000210 0.024182
9627043_197_rc Human poliovirus 3 Picornaviridae 258 0.000820 0.004859
12408699_207_rc Poliovirus Picornaviridae 47 0.000149 0.026274
9627043_197 Human poliovirus 3 Picornaviridae 175 0.000556 0.004859
123738 Enterovirus Yanbian 96-83csf s=0.001748 p=0.789437
9632295_15_rc Human coxsackievirus B6 Picornaviridae 172 0.000547 0.004811
9632295_15 Human coxsackievirus B6 Picornaviridae 140 0.000445 0.004811
21363125_18_rc Human echovirus 1 Picornaviridae 31 0.000099 0.013713
9627719_22 Human enterovirus A Picornaviridae 30 0.000095 0.012615
13242737_8 Enterovirus CA55-1988 Picornaviridae 30 0.000095 0.012188
GSM40853
EPREDICT : 2007-03-28 15:17:54 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40853
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40853:GSM40853
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.316870 p=0.003719
9627730_13_rc Human rhinovirus A Picornaviridae 65401 0.013441 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65396 0.013440 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65443 0.013450 0.019466
9627730_2_rc Human rhinovirus A Picornaviridae 65424 0.013446 0.017563
9627730_22_rc Human rhinovirus A Picornaviridae 65416 0.013444 0.016616
123738 Enterovirus Yanbian 96-83csf s=0.179520 p=0.000411
9627719_18_rc Human enterovirus A Picornaviridae 65444 0.013450 0.014625
21363125_18_rc Human echovirus 1 Picornaviridae 65441 0.013449 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65449 0.013451 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65432 0.013447 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65443 0.013450 0.012615
12090 Human enterovirus D s=0.176310 p=0.000175
9626436_18_rc Human enterovirus 70 Picornaviridae 65436 0.013448 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 38992 0.008014 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65437 0.013448 0.018469
12408699_21_rc Poliovirus Picornaviridae 65457 0.013453 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65458 0.013453 0.014212
169066 Human rhinovirus sp. s=0.167174 p=0.000010
61098_276 Human rhinovirus sp. Picornaviridae 65450 0.013451 0.037355
61098_178 Human rhinovirus sp. Picornaviridae 65434 0.013448 0.034722
61098_255 Human rhinovirus sp. Picornaviridae 65428 0.013447 0.029611
61098_187 Human rhinovirus sp. Picornaviridae 38537 0.007920 0.036614
61098_248 Human rhinovirus sp. Picornaviridae 22853 0.004697 0.029083
138953 Poliovirus s=0.164756 p=0.000148
12408699_21_rc Poliovirus Picornaviridae 65457 0.013453 0.030078
12408699_18_rc Poliovirus Picornaviridae 65443 0.013450 0.028609
9626433_17_rc Human enterovirus C Picornaviridae 65437 0.013448 0.017603
9626436_18_rc Human enterovirus 70 Picornaviridae 65436 0.013448 0.010854
9629634_21_rc Porcine enterovirus B Picornaviridae 65458 0.013453 0.010822
Family: Flaviviridae
54315 Bovine viral diarrhea virus 2 s=0.034274 p=0.000473
9629506_271_rc Bovine viral diarrhea virus 2 Flaviviridae 65422 0.013445 0.061218
9629506_249_rc Bovine viral diarrhea virus 2 Flaviviridae 51 0.000010 0.063363
20178630_249_rc Pestivirus Reindeer-1 Flaviviridae 457 0.000094 0.006298
20178632_260_rc Pestivirus Giraffe-1 Flaviviridae 221 0.000045 0.009272
9629506_9 Bovine viral diarrhea virus 2 Flaviviridae 13 0.000003 0.090298
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.008998 p=0.039353
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 8722 0.001793 0.064086
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 4165 0.000856 0.051960
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2698 0.000554 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 1576 0.000324 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 667 0.000137 0.055619
Family: NA
89463 Sacbrood virus s=0.004676 p=0.103282
9632405_343_rc Sacbrood virus Iflavirus 7980 0.001640 0.063762
9632405_343 Sacbrood virus Iflavirus 305 0.000063 0.063762
9632405_347_rc Sacbrood virus Iflavirus 148 0.000030 0.049549
9632405_349_rc Sacbrood virus Iflavirus 110 0.000023 0.042675
9632405_167_rc Sacbrood virus Iflavirus 36 0.000007 0.052637
141860 Grapevine fanleaf virus satellite RNA s=0.002642 p=0.186207
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 2122 0.000436 0.067655
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 1607 0.000330 0.061403
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 881 0.000181 0.072605
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 139 0.000029 0.060503
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 63 0.000013 0.071992
Family: Herpesviridae
10331 Equine herpesvirus 4 s=0.002231 p=0.606360
9629732_5440 Equid herpesvirus 4 Herpesviridae 2506 0.000515 0.046151
9629732_5441 Equid herpesvirus 4 Herpesviridae 1367 0.000281 0.046151
9629732_3507_rc Equid herpesvirus 4 Herpesviridae 38 0.000008 0.036746
9629732_2383 Equid herpesvirus 4 Herpesviridae 39 0.000008 0.035055
9629732_3104_rc Equid herpesvirus 4 Herpesviridae 41 0.000008 0.030799
10376 Human herpesvirus 4 s=0.001335 p=0.819759
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1494 0.000307 0.013853
EBV_4540_rc Human herpesvirus 4 Herpesviridae 643 0.000132 0.014954
EBV_4535_rc Human herpesvirus 4 Herpesviridae 380 0.000078 0.017003
EBV_6200_rc Human herpesvirus 4 Herpesviridae 322 0.000066 0.014928
EBV_4323_rc Human herpesvirus 4 Herpesviridae 292 0.000060 0.016287
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.001163 p=0.604774
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 298 0.000061 0.036179
9626069_80 Human papillomavirus type 18 Papillomaviridae 255 0.000052 0.030247
9626069_114_P70 Human papillomavirus type 18 Papillomaviridae 208 0.000043 0.036179
9626069_269 Human papillomavirus type 18 Papillomaviridae 233 0.000048 0.028366
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 209 0.000043 0.031469
Iteration: 2
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.176580 p=0.000008
61098_276 Human rhinovirus sp. Picornaviridae 65450 0.046294 0.037355
61098_178 Human rhinovirus sp. Picornaviridae 65434 0.046283 0.034722
61098_187 Human rhinovirus sp. Picornaviridae 38537 0.027258 0.036614
61098_248 Human rhinovirus sp. Picornaviridae 22853 0.016165 0.029083
61098_131_rc Human rhinovirus sp. Picornaviridae 3899 0.002758 0.032392
147712 Human rhinovirus B s=0.116271 p=0.000795
9626735_14_rc Human rhinovirus B Picornaviridae 65422 0.046275 0.024898
9626735_266 Human rhinovirus B Picornaviridae 65446 0.046292 0.018546
9626735_20_rc Human rhinovirus B Picornaviridae 31680 0.022408 0.021059
9626735_257 Human rhinovirus B Picornaviridae 4301 0.003042 0.019989
9626735_3 Human rhinovirus B Picornaviridae 1052 0.000744 0.019131
Family: Flaviviridae
54315 Bovine viral diarrhea virus 2 s=0.073865 p=0.000038
9629506_271_rc Bovine viral diarrhea virus 2 Flaviviridae 65422 0.046275 0.061218
9629506_249_rc Bovine viral diarrhea virus 2 Flaviviridae 51 0.000036 0.063363
20178630_249_rc Pestivirus Reindeer-1 Flaviviridae 457 0.000323 0.006298
20178632_260_rc Pestivirus Giraffe-1 Flaviviridae 221 0.000156 0.009272
9629506_9 Bovine viral diarrhea virus 2 Flaviviridae 13 0.000009 0.090298
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.019392 p=0.006744
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 8722 0.006169 0.064086
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 4165 0.002946 0.051960
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2698 0.001908 0.052060
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 1576 0.001115 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 667 0.000472 0.055619
Family: NA
89463 Sacbrood virus s=0.010075 p=0.025544
9632405_343_rc Sacbrood virus Iflavirus 7980 0.005644 0.063762
9632405_343 Sacbrood virus Iflavirus 305 0.000216 0.063762
9632405_347_rc Sacbrood virus Iflavirus 148 0.000105 0.049549
9632405_349_rc Sacbrood virus Iflavirus 110 0.000078 0.042675
9632405_167_rc Sacbrood virus Iflavirus 36 0.000025 0.052637
141860 Grapevine fanleaf virus satellite RNA s=0.005700 p=0.054920
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 2122 0.001501 0.067655
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 1607 0.001137 0.061403
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 881 0.000623 0.072605
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 139 0.000098 0.060503
16519569_36_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 63 0.000045 0.071992
Family: Herpesviridae
10331 Equine herpesvirus 4 s=0.004809 p=0.387404
9629732_5440 Equid herpesvirus 4 Herpesviridae 2506 0.001773 0.046151
9629732_5441 Equid herpesvirus 4 Herpesviridae 1367 0.000967 0.046151
9629732_3507_rc Equid herpesvirus 4 Herpesviridae 38 0.000027 0.036746
9629732_2383 Equid herpesvirus 4 Herpesviridae 39 0.000028 0.035055
9629732_3104_rc Equid herpesvirus 4 Herpesviridae 41 0.000029 0.030799
10376 Human herpesvirus 4 s=0.002879 p=0.613374
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1494 0.001057 0.013853
EBV_4540_rc Human herpesvirus 4 Herpesviridae 643 0.000455 0.014954
EBV_4535_rc Human herpesvirus 4 Herpesviridae 380 0.000269 0.017003
EBV_6200_rc Human herpesvirus 4 Herpesviridae 322 0.000228 0.014928
EBV_4323_rc Human herpesvirus 4 Herpesviridae 292 0.000207 0.016287
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.002512 p=0.362231
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 298 0.000211 0.036179
9626069_80 Human papillomavirus type 18 Papillomaviridae 255 0.000180 0.030247
9626069_114_P70 Human papillomavirus type 18 Papillomaviridae 208 0.000147 0.036179
9626069_269 Human papillomavirus type 18 Papillomaviridae 233 0.000165 0.028366
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 209 0.000148 0.031469
GSM40854
EPREDICT : 2007-03-28 15:20:05 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40854
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40854:GSM40854
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.287762 p=0.004562
9627730_13_rc Human rhinovirus A Picornaviridae 65372 0.015125 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65383 0.015127 0.020705
9627730_19_rc Human rhinovirus A Picornaviridae 65451 0.015143 0.019466
9627730_22_rc Human rhinovirus A Picornaviridae 65406 0.015133 0.016616
9627730_141_rc Human rhinovirus A Picornaviridae 65434 0.015139 0.015477
12090 Human enterovirus D s=0.225699 p=0.000072
9626436_18_rc Human enterovirus 70 Picornaviridae 65389 0.015129 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65357 0.015121 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65435 0.015139 0.018469
12408699_21_rc Poliovirus Picornaviridae 65429 0.015138 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65440 0.015141 0.014212
138950 Human enterovirus C s=0.213916 p=0.000096
9626433_19_rc Human enterovirus C Picornaviridae 65433 0.015139 0.030944
9626433_17_rc Human enterovirus C Picornaviridae 65435 0.015139 0.029244
9626436_21_rc Human enterovirus 70 Picornaviridae 65357 0.015121 0.017668
9626436_18_rc Human enterovirus 70 Picornaviridae 65389 0.015129 0.015432
12408699_21_rc Poliovirus Picornaviridae 65429 0.015138 0.010914
123738 Enterovirus Yanbian 96-83csf s=0.207880 p=0.000254
21363125_18_rc Human echovirus 1 Picornaviridae 65411 0.015134 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65427 0.015138 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65420 0.015136 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65403 0.015132 0.012615
21363125_21_rc Human echovirus 1 Picornaviridae 65406 0.015133 0.008628
138953 Poliovirus s=0.196002 p=0.000080
12408699_21_rc Poliovirus Picornaviridae 65429 0.015138 0.030078
12408699_18_rc Poliovirus Picornaviridae 65387 0.015128 0.028609
9626433_17_rc Human enterovirus C Picornaviridae 65435 0.015139 0.017603
9626436_21_rc Human enterovirus 70 Picornaviridae 65357 0.015121 0.013701
9626436_18_rc Human enterovirus 70 Picornaviridae 65389 0.015129 0.010854
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.006408 p=0.074466
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 5671 0.001312 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2010 0.000465 0.052060
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 1786 0.000413 0.051960
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 716 0.000166 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 223 0.000052 0.055619
Family: NA
141860 Grapevine fanleaf virus satellite RNA s=0.003258 p=0.139039
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 2670 0.000618 0.067655
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 1511 0.000350 0.061403
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 406 0.000094 0.072605
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 356 0.000082 0.060503
16519569_36 Grapevine fanleaf virus satellite RN Satellite Nuclei 113 0.000026 0.071992
Family: Partitiviridae
148880 Discula destructiva virus 1 s=0.002490 p=0.125346
14327711_22_rc Discula destructiva virus 1 Partitiviridae 2372 0.000549 0.062512
14327711_60_rc Discula destructiva virus 1 Partitiviridae 315 0.000073 0.069477
14327711_44_rc Discula destructiva virus 1 Partitiviridae 294 0.000068 0.071969
20279565_50 Discula destructiva virus 2 Partitiviridae 229 0.000053 0.053037
14327711_60 Discula destructiva virus 1 Partitiviridae 151 0.000035 0.069477
Family: Siphoviridae
148603 Mycobacteriophage Bxb1 s=0.002078 p=0.285516
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 2336 0.000540 0.059726
12657854_478 Mycobacteriophage Bxb1 Siphoviridae 130 0.000030 0.062925
9630386_325 Mycobacteriophage D29 Siphoviridae 294 0.000068 0.027720
12657854_478_rc Mycobacteriophage Bxb1 Siphoviridae 125 0.000029 0.062925
12657854_470_rc Mycobacteriophage Bxb1 Siphoviridae 86 0.000020 0.059529
31757 Mycobacterium phage L5 s=0.002003 p=0.273474
9625433_791 Mycobacterium phage L5 Siphoviridae 1458 0.000337 0.051988
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 2336 0.000540 0.018768
9630386_325 Mycobacteriophage D29 Siphoviridae 294 0.000068 0.036537
9625433_467_rc Mycobacterium phage L5 Siphoviridae 95 0.000022 0.057135
12657854_478 Mycobacteriophage Bxb1 Siphoviridae 130 0.000030 0.041180
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.001994 p=0.721555
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1001 0.000232 0.013853
EBV_4540_rc Human herpesvirus 4 Herpesviridae 753 0.000174 0.014954
EBV_4323_rc Human herpesvirus 4 Herpesviridae 329 0.000076 0.016287
EB60_4323 Human herpesvirus 4 Herpesviridae 471 0.000109 0.011003
EBV_5198_rc Human herpesvirus 4 Herpesviridae 317 0.000073 0.014565
Iteration: 2
Family: Picornaviridae
147712 Human rhinovirus B s=0.119758 p=0.000725
9626735_66_rc Human rhinovirus B Picornaviridae 65453 0.039732 0.021527
9626735_43 Human rhinovirus B Picornaviridae 65399 0.039699 0.019689
9626735_14_rc Human rhinovirus B Picornaviridae 10193 0.006187 0.024898
9626735_257 Human rhinovirus B Picornaviridae 7429 0.004510 0.019989
9626735_43_rc Human rhinovirus B Picornaviridae 5053 0.003067 0.019689
138950 Human enterovirus C s=0.079978 p=0.002027
9626433_19_rc Human enterovirus C Picornaviridae 65433 0.039720 0.030944
9627719_14 Human enterovirus A Picornaviridae 14032 0.008518 0.004323
9626435_47 Human coxsackievirus A24 Picornaviridae 20023 0.012155 0.002820
9626433_23_rc Human enterovirus C Picornaviridae 2059 0.001250 0.023069
21363125_2 Human echovirus 1 Picornaviridae 16241 0.009859 0.002871
138948 Human enterovirus A s=0.047776 p=0.011145
9627719_14 Human enterovirus A Picornaviridae 14032 0.008518 0.020675
9626433_19_rc Human enterovirus C Picornaviridae 65433 0.039720 0.001903
9627719_274 Human enterovirus A Picornaviridae 8686 0.005273 0.011817
13242735_16_rc Enterovirus 5865/sin/000009 Picornaviridae 15305 0.009291 0.005661
21363125_2 Human echovirus 1 Picornaviridae 16241 0.009859 0.003755
138949 Human enterovirus B s=0.040834 p=0.016842
9627719_14 Human enterovirus A Picornaviridae 14032 0.008518 0.010284
9626433_19_rc Human enterovirus C Picornaviridae 65433 0.039720 0.002019
13242735_16_rc Enterovirus 5865/sin/000009 Picornaviridae 15305 0.009291 0.006157
21363125_2 Human echovirus 1 Picornaviridae 16241 0.009859 0.005556
13242737_16_rc Enterovirus CA55-1988 Picornaviridae 12025 0.007300 0.004787
123738 Enterovirus Yanbian 96-83csf s=0.040199 p=0.022496
21363125_2 Human echovirus 1 Picornaviridae 16241 0.009859 0.011270
9626433_19_rc Human enterovirus C Picornaviridae 65433 0.039720 0.002674
9627719_14 Human enterovirus A Picornaviridae 14032 0.008518 0.010612
9632987_1_rc Human coxsackievirus B2 Picornaviridae 3982 0.002417 0.013205
13242735_16_rc Enterovirus 5865/sin/000009 Picornaviridae 15305 0.009291 0.003055
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.013628 p=0.016041
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 5671 0.003442 0.064086
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2010 0.001220 0.052060
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 1786 0.001084 0.051960
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 716 0.000435 0.041460
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 223 0.000135 0.055619
Family: NA
141860 Grapevine fanleaf virus satellite RNA s=0.006936 p=0.037591
16519569_8_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 2670 0.001621 0.067655
16519569_42_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 1511 0.000917 0.061403
16519569_6_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 406 0.000246 0.072605
16519569_4_rc Grapevine fanleaf virus satellite RN Satellite Nuclei 356 0.000216 0.060503
16519569_36 Grapevine fanleaf virus satellite RN Satellite Nuclei 113 0.000069 0.071992
Family: Partitiviridae
148880 Discula destructiva virus 1 s=0.005296 p=0.031004
14327711_22_rc Discula destructiva virus 1 Partitiviridae 2372 0.001440 0.062512
14327711_60_rc Discula destructiva virus 1 Partitiviridae 315 0.000191 0.069477
14327711_44_rc Discula destructiva virus 1 Partitiviridae 294 0.000178 0.071969
20279565_50 Discula destructiva virus 2 Partitiviridae 229 0.000139 0.053037
14327711_60 Discula destructiva virus 1 Partitiviridae 151 0.000092 0.069477
Family: Siphoviridae
148603 Mycobacteriophage Bxb1 s=0.004432 p=0.111679
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 2336 0.001418 0.059726
12657854_478 Mycobacteriophage Bxb1 Siphoviridae 130 0.000079 0.062925
9630386_325 Mycobacteriophage D29 Siphoviridae 294 0.000178 0.027720
12657854_478_rc Mycobacteriophage Bxb1 Siphoviridae 125 0.000076 0.062925
12657854_470_rc Mycobacteriophage Bxb1 Siphoviridae 86 0.000052 0.059529
31757 Mycobacterium phage L5 s=0.004268 p=0.095872
9625433_791 Mycobacterium phage L5 Siphoviridae 1458 0.000885 0.051988
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 2336 0.001418 0.018768
9630386_325 Mycobacteriophage D29 Siphoviridae 294 0.000178 0.036537
9625433_467_rc Mycobacterium phage L5 Siphoviridae 95 0.000058 0.057135
12657854_478 Mycobacteriophage Bxb1 Siphoviridae 130 0.000079 0.041180
Family: Herpesviridae
10376 Human herpesvirus 4 s=0.004246 p=0.488622
EBV_5024_rc Human herpesvirus 4 Herpesviridae 1001 0.000608 0.013853
EBV_4540_rc Human herpesvirus 4 Herpesviridae 753 0.000457 0.014954
EBV_4323_rc Human herpesvirus 4 Herpesviridae 329 0.000200 0.016287
EB60_4323 Human herpesvirus 4 Herpesviridae 471 0.000286 0.011003
EBV_5198_rc Human herpesvirus 4 Herpesviridae 317 0.000192 0.014565
GSM40855
EPREDICT : 2007-03-28 15:25:32 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40855
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40855:GSM40855
Iteration: 1
Family: Picornaviridae
147711 Human rhinovirus A s=0.268636 p=0.005265
9627730_13_rc Human rhinovirus A Picornaviridae 65403 0.015419 0.021650
9627730_12_rc Human rhinovirus A Picornaviridae 65400 0.015418 0.020705
9627730_16_rc Human rhinovirus A Picornaviridae 65336 0.015403 0.018468
9627730_22_rc Human rhinovirus A Picornaviridae 65375 0.015412 0.016616
9627730_43 Human rhinovirus A Picornaviridae 55498 0.013084 0.015015
12090 Human enterovirus D s=0.226787 p=0.000071
9626436_18_rc Human enterovirus 70 Picornaviridae 65423 0.015424 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65424 0.015424 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65389 0.015416 0.018469
12408699_21_rc Poliovirus Picornaviridae 65419 0.015423 0.018381
9629634_21_rc Porcine enterovirus B Picornaviridae 65424 0.015424 0.014212
123738 Enterovirus Yanbian 96-83csf s=0.217028 p=0.000219
21363125_18_rc Human echovirus 1 Picornaviridae 65411 0.015421 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65406 0.015420 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65398 0.015418 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65410 0.015421 0.012615
21363125_21_rc Human echovirus 1 Picornaviridae 65403 0.015419 0.008628
138950 Human enterovirus C s=0.213332 p=0.000097
9626433_17_rc Human enterovirus C Picornaviridae 65389 0.015416 0.029244
9626433_19_rc Human enterovirus C Picornaviridae 60433 0.014247 0.030944
9626436_21_rc Human enterovirus 70 Picornaviridae 65424 0.015424 0.017668
9626436_18_rc Human enterovirus 70 Picornaviridae 65423 0.015424 0.015432
12408699_21_rc Poliovirus Picornaviridae 65419 0.015423 0.010914
138953 Poliovirus s=0.196029 p=0.000079
12408699_21_rc Poliovirus Picornaviridae 65419 0.015423 0.030078
12408699_18_rc Poliovirus Picornaviridae 65394 0.015417 0.028609
9626433_17_rc Human enterovirus C Picornaviridae 65389 0.015416 0.017603
9626436_21_rc Human enterovirus 70 Picornaviridae 65424 0.015424 0.013701
9626436_18_rc Human enterovirus 70 Picornaviridae 65423 0.015424 0.010854
Family: NA
208177 Tomato leaf curl Vietnam virus s=0.005649 p=0.468229
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1427 0.000336 0.010691
10518470_58 Tomato rugose mosaic virus Geminiviridae 950 0.000224 0.008964
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 862 0.000203 0.008255
9630671_66_rc Indian cassava mosaic virus Geminiviridae 1030 0.000243 0.006787
21426900_58 Tomato yellow leaf curl virus Geminiviridae 632 0.000149 0.010691
207697 Croton yellow vein mosaic virus s=0.005517 p=0.433852
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1006 0.000237 0.009546
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1427 0.000336 0.006481
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1136 0.000268 0.007716
20340272_57 Tobacco curly shoot virus Geminiviridae 901 0.000212 0.009546
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 862 0.000203 0.009817
161378 Sri Lankan cassava mosaic virus s=0.005203 p=0.410005
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1136 0.000268 0.018005
9630671_66_rc Indian cassava mosaic virus Geminiviridae 1030 0.000243 0.017579
9630671_66 Indian cassava mosaic virus Geminiviridae 579 0.000137 0.017579
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 499 0.000118 0.018005
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1006 0.000237 0.007937
222464 Cotton leaf curl Kokhran virus s=0.005066 p=0.510720
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1006 0.000237 0.007528
21218470_58_rc Tomato leaf curl Karnataka virus Geminiviridae 779 0.000184 0.009300
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1427 0.000336 0.004894
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1136 0.000268 0.006085
20340272_57 Tobacco curly shoot virus Geminiviridae 901 0.000212 0.007528
220932 Tomato leaf curl Karnataka virus s=0.005039 p=0.486313
21218470_58_rc Tomato leaf curl Karnataka virus Geminiviridae 779 0.000184 0.013622
21218470_58 Tomato leaf curl Karnataka virus Geminiviridae 722 0.000170 0.013622
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1006 0.000237 0.008232
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1427 0.000336 0.005588
20340272_57 Tobacco curly shoot virus Geminiviridae 901 0.000212 0.008232
Family: Parvoviridae
111792 Infectious hypodermal and hematopoietic s=0.004217 p=0.223135
9634944_104_rc Infectious hypodermal and hematopoie Parvoviridae 4909 0.001157 0.102287
9634944_47_rc Infectious hypodermal and hematopoie Parvoviridae 494 0.000116 0.100439
9634944_47 Infectious hypodermal and hematopoie Parvoviridae 136 0.000032 0.100439
9634944_153 Infectious hypodermal and hematopoie Parvoviridae 95 0.000022 0.098811
9634944_134_rc Infectious hypodermal and hematopoie Parvoviridae 62 0.000015 0.106032
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.003898 p=0.163015
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 3570 0.000842 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 1433 0.000338 0.064086
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 879 0.000207 0.041460
9629935_398 Rhopalosiphum padi virus Dicistroviridae 501 0.000118 0.052060
9629935_396 Rhopalosiphum padi virus Dicistroviridae 188 0.000044 0.051960
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.003856 p=0.672930
9625671_4716_rc Human herpesvirus 5 Herpesviridae 3545 0.000836 0.004685
HCMVUL129_254 Human herpesvirus 5 Herpesviridae 1957 0.000461 0.004072
9625671_3138 Human herpesvirus 5 Herpesviridae 1232 0.000290 0.004744
HCMVUL95_185 Human herpesvirus 5 Herpesviridae 695 0.000164 0.005059
HCMVUL62_540 Human herpesvirus 5 Herpesviridae 523 0.000123 0.005575
Family: Flaviviridae
11053 Dengue virus s=0.003842 p=0.442257
9626685_344_rc Dengue virus type 1 Flaviviridae 3722 0.000877 0.058148
9626685_424_rc Dengue virus type 1 Flaviviridae 384 0.000091 0.063192
9626685_367_rc Dengue virus type 1 Flaviviridae 276 0.000065 0.054720
12084822_421_rc Dengue virus type 4 Flaviviridae 502 0.000118 0.028950
9626685_357_rc Dengue virus type 1 Flaviviridae 163 0.000038 0.054720
Iteration: 2
Family: Picornaviridae
169066 Human rhinovirus sp. s=0.110826 p=0.000054
61098_276 Human rhinovirus sp. Picornaviridae 52828 0.033908 0.037355
61098_31 Human rhinovirus sp. Picornaviridae 13744 0.008822 0.034650
61098_31_rc Human rhinovirus sp. Picornaviridae 12264 0.007872 0.034650
61098_58 Human rhinovirus sp. Picornaviridae 8800 0.005648 0.036984
61098_45 Human rhinovirus sp. Picornaviridae 1185 0.000761 0.033441
138950 Human enterovirus C s=0.080280 p=0.002007
9626433_19_rc Human enterovirus C Picornaviridae 60433 0.038789 0.030944
21363125_2 Human echovirus 1 Picornaviridae 11458 0.007354 0.002871
9626433_32_rc Human enterovirus C Picornaviridae 762 0.000489 0.024681
9626433_60 Human enterovirus C Picornaviridae 640 0.000411 0.029298
9626433_182_rc Human enterovirus C Picornaviridae 563 0.000361 0.028120
123738 Enterovirus Yanbian 96-83csf s=0.068575 p=0.006509
13242737_20_rc Enterovirus CA55-1988 Picornaviridae 25088 0.016103 0.008078
13242735_20_rc Enterovirus 5865/sin/000009 Picornaviridae 24631 0.015809 0.007171
9626433_19_rc Human enterovirus C Picornaviridae 60433 0.038789 0.002674
9635675_20_rc Swine vesicular disease virus Picornaviridae 51858 0.033285 0.002632
21363125_2 Human echovirus 1 Picornaviridae 11458 0.007354 0.011270
138949 Human enterovirus B s=0.064945 p=0.005355
13242737_20_rc Enterovirus CA55-1988 Picornaviridae 25088 0.016103 0.008978
9635675_20_rc Swine vesicular disease virus Picornaviridae 51858 0.033285 0.003576
9626433_19_rc Human enterovirus C Picornaviridae 60433 0.038789 0.002019
9629181_20_rc Human enterovirus 71 Picornaviridae 10931 0.007016 0.011070
13242735_20_rc Enterovirus 5865/sin/000009 Picornaviridae 24631 0.015809 0.004106
138948 Human enterovirus A s=0.053425 p=0.008510
9635675_20_rc Swine vesicular disease virus Picornaviridae 51858 0.033285 0.003158
13242737_20_rc Enterovirus CA55-1988 Picornaviridae 25088 0.016103 0.006032
9629181_20_rc Human enterovirus 71 Picornaviridae 10931 0.007016 0.010739
9626433_19_rc Human enterovirus C Picornaviridae 60433 0.038789 0.001903
13242735_20_rc Enterovirus 5865/sin/000009 Picornaviridae 24631 0.015809 0.003303
Family: NA
208177 Tomato leaf curl Vietnam virus s=0.013741 p=0.240543
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1427 0.000916 0.010691
10518470_58 Tomato rugose mosaic virus Geminiviridae 950 0.000610 0.008964
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 862 0.000553 0.008255
9630671_66_rc Indian cassava mosaic virus Geminiviridae 1030 0.000661 0.006787
21426900_58 Tomato yellow leaf curl virus Geminiviridae 632 0.000406 0.010691
207697 Croton yellow vein mosaic virus s=0.013418 p=0.215039
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1006 0.000646 0.009546
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1427 0.000916 0.006481
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1136 0.000729 0.007716
20340272_57 Tobacco curly shoot virus Geminiviridae 901 0.000578 0.009546
9631562_58_rc Tomato yellow leaf curl virus - Isra Geminiviridae 862 0.000553 0.009817
161378 Sri Lankan cassava mosaic virus s=0.012648 p=0.199452
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1136 0.000729 0.018005
9630671_66_rc Indian cassava mosaic virus Geminiviridae 1030 0.000661 0.017579
9630671_66 Indian cassava mosaic virus Geminiviridae 579 0.000372 0.017579
20806048_58 Sri Lankan cassava mosaic virus Geminiviridae 499 0.000320 0.018005
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1006 0.000646 0.007937
222464 Cotton leaf curl Kokhran virus s=0.012311 p=0.271719
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1006 0.000646 0.007528
21218470_58_rc Tomato leaf curl Karnataka virus Geminiviridae 779 0.000500 0.009300
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1427 0.000916 0.004894
20806048_58_rc Sri Lankan cassava mosaic virus Geminiviridae 1136 0.000729 0.006085
20340272_57 Tobacco curly shoot virus Geminiviridae 901 0.000578 0.007528
220932 Tomato leaf curl Karnataka virus s=0.012249 p=0.253054
21218470_58_rc Tomato leaf curl Karnataka virus Geminiviridae 779 0.000500 0.013622
21218470_58 Tomato leaf curl Karnataka virus Geminiviridae 722 0.000463 0.013622
20340272_57_rc Tobacco curly shoot virus Geminiviridae 1006 0.000646 0.008232
21426900_58_rc Tomato yellow leaf curl virus Geminiviridae 1427 0.000916 0.005588
20340272_57 Tobacco curly shoot virus Geminiviridae 901 0.000578 0.008232
Family: Parvoviridae
111792 Infectious hypodermal and hematopoietic s=0.010265 p=0.082337
9634944_104_rc Infectious hypodermal and hematopoie Parvoviridae 4909 0.003151 0.102287
9634944_47_rc Infectious hypodermal and hematopoie Parvoviridae 494 0.000317 0.100439
9634944_47 Infectious hypodermal and hematopoie Parvoviridae 136 0.000087 0.100439
9634944_153 Infectious hypodermal and hematopoie Parvoviridae 95 0.000061 0.098811
9634944_134_rc Infectious hypodermal and hematopoie Parvoviridae 62 0.000040 0.106032
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.009474 p=0.035453
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 3570 0.002291 0.051960
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 1433 0.000920 0.064086
9629935_326_rc Rhopalosiphum padi virus Dicistroviridae 879 0.000564 0.041460
9629935_398 Rhopalosiphum padi virus Dicistroviridae 501 0.000322 0.052060
9629935_396 Rhopalosiphum padi virus Dicistroviridae 188 0.000121 0.051960
Family: Herpesviridae
10359 Human herpesvirus 5 s=0.009382 p=0.409372
9625671_4716_rc Human herpesvirus 5 Herpesviridae 3545 0.002275 0.004685
HCMVUL129_254 Human herpesvirus 5 Herpesviridae 1957 0.001256 0.004072
9625671_3138 Human herpesvirus 5 Herpesviridae 1232 0.000791 0.004744
HCMVUL95_185 Human herpesvirus 5 Herpesviridae 695 0.000446 0.005059
HCMVUL62_540 Human herpesvirus 5 Herpesviridae 523 0.000336 0.005575
Family: Flaviviridae
11053 Dengue virus s=0.009349 p=0.219369
9626685_344_rc Dengue virus type 1 Flaviviridae 3722 0.002389 0.058148
9626685_424_rc Dengue virus type 1 Flaviviridae 384 0.000246 0.063192
9626685_367_rc Dengue virus type 1 Flaviviridae 276 0.000177 0.054720
12084822_421_rc Dengue virus type 4 Flaviviridae 502 0.000322 0.028950
9626685_357_rc Dengue virus type 1 Flaviviridae 163 0.000105 0.054720
GSM40856
EPREDICT : 2007-03-28 15:40:02 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40856
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40856:GSM40856
Iteration: 1
Family: Paramyxoviridae
11250 Human respiratory syncytial virus s=0.775954 p=0.000000
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 65256 0.034074 0.065924
9629198_133 Human respiratory syncytial virus Paramyxoviridae 65417 0.034158 0.055394
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 65324 0.034109 0.055394
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 65382 0.034140 0.053916
9629198_111 Human respiratory syncytial virus Paramyxoviridae 65408 0.034153 0.049603
12814 Respiratory syncytial virus s=0.615108 p=0.000000
9629367_130_rc Respiratory syncytial virus Paramyxoviridae 65299 0.034096 0.050854
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 53304 0.027833 0.047021
9629198_131_rc Human respiratory syncytial virus Paramyxoviridae 65256 0.034074 0.036764
9629367_519_rc Respiratory syncytial virus Paramyxoviridae 55561 0.029012 0.039895
9629367_519 Respiratory syncytial virus Paramyxoviridae 49492 0.025843 0.039895
11246 Bovine respiratory syncytial virus s=0.369703 p=0.000000
9631267_130_rc Bovine respiratory syncytial virus Paramyxoviridae 65430 0.034165 0.048894
9631267_156 Bovine respiratory syncytial virus Paramyxoviridae 65431 0.034165 0.040235
9631267_463_rc Bovine respiratory syncytial virus Paramyxoviridae 43419 0.022672 0.049394
9631267_63_rc Bovine respiratory syncytial virus Paramyxoviridae 27925 0.014581 0.048894
9629198_133 Human respiratory syncytial virus Paramyxoviridae 65417 0.034158 0.019006
162145 Turkey rhinotracheitis virus s=0.054006 p=0.002147
22780169_354_rc Human metapneumovirus Paramyxoviridae 20746 0.010833 0.057362
22780169_372_rc Human metapneumovirus Paramyxoviridae 17644 0.009213 0.055561
9629198_434_rc Human respiratory syncytial virus Paramyxoviridae 65382 0.034140 0.008364
22780169_354 Human metapneumovirus Paramyxoviridae 5730 0.002992 0.057362
9629198_434 Human respiratory syncytial virus Paramyxoviridae 14862 0.007760 0.008364
63330 Hendra virus s=0.019730 p=0.002905
9630557_512_rc Hendra virus Paramyxoviridae 10353 0.005406 0.063396
9630557_523_rc Hendra virus Paramyxoviridae 7075 0.003694 0.072672
9630557_521_rc Hendra virus Paramyxoviridae 2550 0.001332 0.059915
9630557_521 Hendra virus Paramyxoviridae 634 0.000331 0.059915
9630557_512 Hendra virus Paramyxoviridae 590 0.000308 0.063396
Family: Picornaviridae
12118 Foot-and-mouth disease virus O s=0.006286 p=0.308349
10092580_177 Foot-and-mouth disease virus O Picornaviridae 5273 0.002753 0.042862
10092580_177_rc Foot-and-mouth disease virus O Picornaviridae 664 0.000347 0.042862
21426907_193_rc Foot-and-mouth disease virus O Picornaviridae 314 0.000164 0.043889
21426907_193 Foot-and-mouth disease virus O Picornaviridae 293 0.000153 0.043889
10092580_294_rc Foot-and-mouth disease virus O Picornaviridae 102 0.000053 0.034358
Family: Orthomyxoviridae
203225 Influenza C virus s=0.005692 p=0.150035
4520250_27_rc Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 1538 0.000803 0.168629
4520250_23_rc Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 924 0.000482 0.170970
4520250_10_rc Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 749 0.000391 0.160401
4520250_27 Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 360 0.000188 0.168629
4520250_10 Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 128 0.000067 0.160401
Family: Siphoviridae
10710 Bacteriophage lambda s=0.004730 p=0.275058
9626243_1842 Bacteriophage lambda Siphoviridae 3436 0.001794 0.024819
9634155_1484 Bacteriophage HK97 Siphoviridae 903 0.000472 0.013659
13559823_696 Bacteriophage HK620 Siphoviridae 824 0.000430 0.014213
13559823_696_rc Bacteriophage HK620 Siphoviridae 466 0.000243 0.014213
9626243_1842_rc Bacteriophage lambda Siphoviridae 252 0.000132 0.024819
155148 Bacteriophage HK620 s=0.004024 p=0.337899
9626243_1842 Bacteriophage lambda Siphoviridae 3436 0.001794 0.013419
13559823_696 Bacteriophage HK620 Siphoviridae 824 0.000430 0.020548
9634155_1484 Bacteriophage HK97 Siphoviridae 903 0.000472 0.015268
13559823_696_rc Bacteriophage HK620 Siphoviridae 466 0.000243 0.020548
13559823_523_rc Bacteriophage HK620 Siphoviridae 238 0.000124 0.019970
37554 Bacteriophage HK97 s=0.003400 p=0.397172
9626243_1842 Bacteriophage lambda Siphoviridae 3436 0.001794 0.009016
9634155_1484 Bacteriophage HK97 Siphoviridae 903 0.000472 0.025754
13559823_696 Bacteriophage HK620 Siphoviridae 824 0.000430 0.013093
13559823_696_rc Bacteriophage HK620 Siphoviridae 466 0.000243 0.013093
13559823_523_rc Bacteriophage HK620 Siphoviridae 238 0.000124 0.021980
Family: Tombusviridae
11987 Melon necrotic spot virus s=0.003352 p=0.224290
9626971_70 Melon necrotic spot virus Tombusviridae 2576 0.001345 0.085175
9626971_70_rc Melon necrotic spot virus Tombusviridae 182 0.000095 0.085175
9626971_55_rc Melon necrotic spot virus Tombusviridae 82 0.000043 0.103880
9626971_160_rc Melon necrotic spot virus Tombusviridae 79 0.000041 0.096212
9626971_53_rc Melon necrotic spot virus Tombusviridae 71 0.000037 0.090432
Family: NA
57119 Bean yellow dwarf virus s=0.002829 p=0.206040
19881400_63_rc Bean yellow dwarf virus Geminiviridae 1987 0.001038 0.092848
19881400_63 Bean yellow dwarf virus Geminiviridae 111 0.000058 0.092848
19881400_59_rc Bean yellow dwarf virus Geminiviridae 40 0.000021 0.073582
20564135_66_rc Tobacco yellow dwarf virus Geminiviridae 81 0.000042 0.033796
19881400_65 Bean yellow dwarf virus Geminiviridae 17 0.000009 0.102689
Iteration: 2
Family: Paramyxoviridae
63330 Hendra virus s=0.055899 p=0.000129
9630557_512_rc Hendra virus Paramyxoviridae 10353 0.016257 0.063396
9630557_523_rc Hendra virus Paramyxoviridae 7075 0.011110 0.072672
9630557_521_rc Hendra virus Paramyxoviridae 2550 0.004004 0.059915
9630557_521 Hendra virus Paramyxoviridae 634 0.000996 0.059915
9630557_512 Hendra virus Paramyxoviridae 590 0.000926 0.063396
Family: Picornaviridae
12118 Foot-and-mouth disease virus O s=0.017804 p=0.107591
10092580_177 Foot-and-mouth disease virus O Picornaviridae 5273 0.008280 0.042862
10092580_177_rc Foot-and-mouth disease virus O Picornaviridae 664 0.001043 0.042862
21426907_193_rc Foot-and-mouth disease virus O Picornaviridae 314 0.000493 0.043889
21426907_193 Foot-and-mouth disease virus O Picornaviridae 293 0.000460 0.043889
10092580_294_rc Foot-and-mouth disease virus O Picornaviridae 102 0.000160 0.034358
Family: Orthomyxoviridae
203225 Influenza C virus s=0.016133 p=0.034350
4520250_27_rc Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 1538 0.002415 0.168629
4520250_23_rc Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 924 0.001451 0.170970
4520250_10_rc Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 749 0.001176 0.160401
4520250_27 Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 360 0.000565 0.168629
4520250_10 Influenza C virus (C/Hyogo/1/83) Orthomyxoviridae 128 0.000201 0.160401
Family: Siphoviridae
10710 Bacteriophage lambda s=0.013394 p=0.070713
9626243_1842 Bacteriophage lambda Siphoviridae 3436 0.005395 0.024819
9634155_1484 Bacteriophage HK97 Siphoviridae 903 0.001418 0.013659
13559823_696 Bacteriophage HK620 Siphoviridae 824 0.001294 0.014213
13559823_696_rc Bacteriophage HK620 Siphoviridae 466 0.000732 0.014213
9626243_1842_rc Bacteriophage lambda Siphoviridae 252 0.000396 0.024819
155148 Bacteriophage HK620 s=0.011393 p=0.099521
9626243_1842 Bacteriophage lambda Siphoviridae 3436 0.005395 0.013419
13559823_696 Bacteriophage HK620 Siphoviridae 824 0.001294 0.020548
9634155_1484 Bacteriophage HK97 Siphoviridae 903 0.001418 0.015268
13559823_696_rc Bacteriophage HK620 Siphoviridae 466 0.000732 0.020548
13559823_523_rc Bacteriophage HK620 Siphoviridae 238 0.000374 0.019970
37554 Bacteriophage HK97 s=0.009629 p=0.140797
9626243_1842 Bacteriophage lambda Siphoviridae 3436 0.005395 0.009016
9634155_1484 Bacteriophage HK97 Siphoviridae 903 0.001418 0.025754
13559823_696 Bacteriophage HK620 Siphoviridae 824 0.001294 0.013093
13559823_696_rc Bacteriophage HK620 Siphoviridae 466 0.000732 0.013093
13559823_523_rc Bacteriophage HK620 Siphoviridae 238 0.000374 0.021980
Family: Tombusviridae
11987 Melon necrotic spot virus s=0.009501 p=0.064347
9626971_70 Melon necrotic spot virus Tombusviridae 2576 0.004045 0.085175
9626971_70_rc Melon necrotic spot virus Tombusviridae 182 0.000286 0.085175
9626971_55_rc Melon necrotic spot virus Tombusviridae 82 0.000129 0.103880
9626971_160_rc Melon necrotic spot virus Tombusviridae 79 0.000124 0.096212
9626971_53_rc Melon necrotic spot virus Tombusviridae 71 0.000111 0.090432
Family: NA
57119 Bean yellow dwarf virus s=0.008012 p=0.057733
19881400_63_rc Bean yellow dwarf virus Geminiviridae 1987 0.003120 0.092848
19881400_63 Bean yellow dwarf virus Geminiviridae 111 0.000174 0.092848
19881400_59_rc Bean yellow dwarf virus Geminiviridae 40 0.000063 0.073582
20564135_66_rc Tobacco yellow dwarf virus Geminiviridae 81 0.000127 0.033796
19881400_65 Bean yellow dwarf virus Geminiviridae 17 0.000027 0.102689
GSM40857
EPREDICT : 2007-03-28 15:43:54 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40857
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40857:GSM40857
Iteration: 1
Family: Paramyxoviridae
12814 Respiratory syncytial virus s=0.454779 p=0.000000
9629367_111_rc Respiratory syncytial virus Paramyxoviridae 6720 0.111273 0.044362
9629367_519_rc Respiratory syncytial virus Paramyxoviridae 3335 0.055223 0.039895
9629198_111_rc Human respiratory syncytial virus Paramyxoviridae 6815 0.112846 0.010354
9629367_63 Respiratory syncytial virus Paramyxoviridae 1316 0.021791 0.047021
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 1129 0.018695 0.047021
11250 Human respiratory syncytial virus s=0.349692 p=0.000004
9629198_111_rc Human respiratory syncytial virus Paramyxoviridae 6815 0.112846 0.049603
9629367_111_rc Respiratory syncytial virus Paramyxoviridae 6720 0.111273 0.010829
9629367_519_rc Respiratory syncytial virus Paramyxoviridae 3335 0.055223 0.018341
9629198_107 Human respiratory syncytial virus Paramyxoviridae 1108 0.018347 0.045780
9629198_133_rc Human respiratory syncytial virus Paramyxoviridae 640 0.010597 0.055394
11246 Bovine respiratory syncytial virus s=0.113627 p=0.000018
9631267_463_rc Bovine respiratory syncytial virus Paramyxoviridae 689 0.011409 0.049394
9629198_111_rc Human respiratory syncytial virus Paramyxoviridae 6815 0.112846 0.004705
9629367_63 Respiratory syncytial virus Paramyxoviridae 1316 0.021791 0.023265
9629367_63_rc Respiratory syncytial virus Paramyxoviridae 1129 0.018695 0.023265
9631267_463 Bovine respiratory syncytial virus Paramyxoviridae 387 0.006408 0.049394
162145 Turkey rhinotracheitis virus s=0.041162 p=0.004129
22780169_354_rc Human metapneumovirus Paramyxoviridae 1140 0.018877 0.057362
22780169_372_rc Human metapneumovirus Paramyxoviridae 186 0.003080 0.055561
22780169_372 Human metapneumovirus Paramyxoviridae 159 0.002633 0.055561
22780169_331 Human metapneumovirus Paramyxoviridae 74 0.001225 0.059561
22780169_354 Human metapneumovirus Paramyxoviridae 65 0.001076 0.057362
Iteration: 2
***** No hits found! *****
GSM40858
EPREDICT : 2007-03-28 15:45:36 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40858
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40858:GSM40858
Iteration: 1
Family: Orthomyxoviridae
11320 Influenza A virus s=0.494706 p=0.000000
8486129_2_rc Influenza A virus Orthomyxoviridae 65426 0.137464 0.073315
8486129_20_rc Influenza A virus Orthomyxoviridae 56382 0.118462 0.073178
8486129_29_rc Influenza A virus Orthomyxoviridae 65437 0.137487 0.061521
8486129_38 Influenza A virus Orthomyxoviridae 21307 0.044767 0.066505
8486129_56 Influenza A virus Orthomyxoviridae 5482 0.011518 0.073726
183764 Influenza A virus s=0.483787 p=0.000000
8486129_2_rc Influenza A virus Orthomyxoviridae 65426 0.137464 0.075257
8486129_29_rc Influenza A virus Orthomyxoviridae 65437 0.137487 0.063151
8486129_20_rc Influenza A virus Orthomyxoviridae 56382 0.118462 0.061872
8486129_38 Influenza A virus Orthomyxoviridae 21307 0.044767 0.068267
8486129_56 Influenza A virus Orthomyxoviridae 5482 0.011518 0.075679
130760 Influenza A virus s=0.386831 p=0.000003
8486129_59 Influenza A virus Orthomyxoviridae 43874 0.092182 0.161429
8486129_2_rc Influenza A virus Orthomyxoviridae 65426 0.137464 0.070929
8486129_29_rc Influenza A virus Orthomyxoviridae 65437 0.137487 0.060575
8486129_56 Influenza A virus Orthomyxoviridae 5482 0.011518 0.207068
8486129_59_rc Influenza A virus Orthomyxoviridae 6819 0.014327 0.161429
Family: Retroviridae
11819 Spleen focus-forming virus s=0.010881 p=0.127932
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.003086 0.018797
9626955_248 Spleen focus-forming virus Retroviridae 861 0.001809 0.018731
9626955_248_rc Spleen focus-forming virus Retroviridae 854 0.001794 0.018731
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.001448 0.018797
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.001702 0.013108
11830 Murine osteosarcoma virus s=0.008558 p=0.181574
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.003086 0.010616
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.001702 0.013567
9626955_248 Spleen focus-forming virus Retroviridae 861 0.001809 0.010514
9626955_248_rc Spleen focus-forming virus Retroviridae 854 0.001794 0.010514
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.001448 0.010616
11938 Rauscher murine leukemia virus s=0.007793 p=0.214251
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.003086 0.010649
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.001702 0.012690
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.001448 0.010649
9626096_331 Friend murine leukemia virus Retroviridae 437 0.000918 0.013215
9626955_248 Spleen focus-forming virus Retroviridae 861 0.001809 0.005531
11795 Friend murine leukemia virus s=0.007722 p=0.222196
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.003086 0.008482
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.001702 0.014331
9626096_331 Friend murine leukemia virus Retroviridae 437 0.000918 0.016892
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.001448 0.008482
9626955_248 Spleen focus-forming virus Retroviridae 861 0.001809 0.006191
11788 Abelson murine leukemia virus s=0.007232 p=0.242560
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.001702 0.017708
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.003086 0.006707
9626953_203_rc Abelson murine leukemia virus Retroviridae 329 0.000691 0.017708
9626096_331 Friend murine leukemia virus Retroviridae 437 0.000918 0.010681
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.001448 0.006707
Iteration: 2
Family: Retroviridae
11819 Spleen focus-forming virus s=0.026962 p=0.030019
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.005759 0.018797
9626955_248 Spleen focus-forming virus Retroviridae 861 0.003376 0.018731
9626955_248_rc Spleen focus-forming virus Retroviridae 854 0.003348 0.018731
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.002701 0.018797
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.003176 0.013108
11830 Murine osteosarcoma virus s=0.021202 p=0.049236
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.005759 0.010616
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.003176 0.013567
9626955_248 Spleen focus-forming virus Retroviridae 861 0.003376 0.010514
9626955_248_rc Spleen focus-forming virus Retroviridae 854 0.003348 0.010514
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.002701 0.010616
11938 Rauscher murine leukemia virus s=0.019310 p=0.062359
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.005759 0.010649
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.003176 0.012690
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.002701 0.010649
9626096_331 Friend murine leukemia virus Retroviridae 437 0.001713 0.013215
9626955_248 Spleen focus-forming virus Retroviridae 861 0.003376 0.005531
11795 Friend murine leukemia virus s=0.019133 p=0.065862
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.005759 0.008482
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.003176 0.014331
9626096_331 Friend murine leukemia virus Retroviridae 437 0.001713 0.016892
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.002701 0.008482
9626955_248 Spleen focus-forming virus Retroviridae 861 0.003376 0.006191
11788 Abelson murine leukemia virus s=0.017921 p=0.075155
9626953_203 Abelson murine leukemia virus Retroviridae 810 0.003176 0.017708
9626955_16 Spleen focus-forming virus Retroviridae 1469 0.005759 0.006707
9626953_203_rc Abelson murine leukemia virus Retroviridae 329 0.001290 0.017708
9626096_331 Friend murine leukemia virus Retroviridae 437 0.001713 0.010681
9626955_16_rc Spleen focus-forming virus Retroviridae 689 0.002701 0.006707
GSM40859
EPREDICT : 2007-03-28 15:47:20 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40859
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40859:GSM40859
Iteration: 1
Family: Picornaviridae
147712 Human rhinovirus B s=0.438714 p=0.000006
9626735_14_rc Human rhinovirus B Picornaviridae 65390 0.015483 0.024898
9626735_16_rc Human rhinovirus B Picornaviridae 65415 0.015489 0.023121
9626735_18_rc Human rhinovirus B Picornaviridae 65402 0.015486 0.022396
9626735_66_rc Human rhinovirus B Picornaviridae 65452 0.015498 0.021527
9626735_20_rc Human rhinovirus B Picornaviridae 65411 0.015488 0.021059
12090 Human enterovirus D s=0.275405 p=0.000034
9626436_18_rc Human enterovirus 70 Picornaviridae 65419 0.015490 0.033147
9626436_21_rc Human enterovirus 70 Picornaviridae 65426 0.015491 0.031978
9626433_17_rc Human enterovirus C Picornaviridae 65414 0.015489 0.018469
12408699_21_rc Poliovirus Picornaviridae 65433 0.015493 0.018381
9626436_21 Human enterovirus 70 Picornaviridae 33943 0.008037 0.031978
138953 Poliovirus s=0.254968 p=0.000030
12408699_21_rc Poliovirus Picornaviridae 65433 0.015493 0.030078
12408699_18_rc Poliovirus Picornaviridae 65415 0.015489 0.028609
12408699_21 Poliovirus Picornaviridae 42099 0.009968 0.030078
9626433_17_rc Human enterovirus C Picornaviridae 65414 0.015489 0.017603
9626436_21_rc Human enterovirus 70 Picornaviridae 65426 0.015491 0.013701
138950 Human enterovirus C s=0.251888 p=0.000054
9626433_19_rc Human enterovirus C Picornaviridae 65436 0.015494 0.030944
9626433_17_rc Human enterovirus C Picornaviridae 65414 0.015489 0.029244
9626436_21_rc Human enterovirus 70 Picornaviridae 65426 0.015491 0.017668
9626436_18_rc Human enterovirus 70 Picornaviridae 65419 0.015490 0.015432
9626433_21 Human enterovirus C Picornaviridae 29256 0.006927 0.028226
123738 Enterovirus Yanbian 96-83csf s=0.237623 p=0.000161
21363125_18_rc Human echovirus 1 Picornaviridae 65414 0.015489 0.013713
9626677_18_rc Human enterovirus B Picornaviridae 65427 0.015492 0.013331
9626677_22_rc Human enterovirus B Picornaviridae 65414 0.015489 0.012676
9627719_22_rc Human enterovirus A Picornaviridae 65416 0.015489 0.012615
21363125_21_rc Human echovirus 1 Picornaviridae 65415 0.015489 0.008628
Family: NA
89463 Sacbrood virus s=0.041871 p=0.000626
9632405_343_rc Sacbrood virus Iflavirus 65439 0.015494 0.063762
9632405_347_rc Sacbrood virus Iflavirus 1545 0.000366 0.049549
9632405_349_rc Sacbrood virus Iflavirus 1344 0.000318 0.042675
9632405_343 Sacbrood virus Iflavirus 483 0.000114 0.063762
9632405_345_rc Sacbrood virus Iflavirus 159 0.000038 0.061405
Family: Adenoviridae
129951 Human adenovirus C s=0.006567 p=0.336990
9626158_268 Human adenovirus C Adenoviridae 5845 0.001384 0.026380
9626187_754_rc Human adenovirus type 5 Adenoviridae 4497 0.001065 0.024908
9626187_859_rc Human adenovirus type 5 Adenoviridae 1325 0.000314 0.022130
9626187_759_rc Human adenovirus type 5 Adenoviridae 1656 0.000392 0.016229
9626187_866_rc Human adenovirus type 5 Adenoviridae 284 0.000067 0.023147
Family: Siphoviridae
31757 Mycobacterium phage L5 s=0.006236 p=0.048672
9625433_791 Mycobacterium phage L5 Siphoviridae 9234 0.002187 0.051988
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 4213 0.000998 0.018768
9625433_467_rc Mycobacterium phage L5 Siphoviridae 53 0.000013 0.057135
9630386_496 Mycobacteriophage D29 Siphoviridae 181 0.000043 0.017189
9630386_496_rc Mycobacteriophage D29 Siphoviridae 81 0.000019 0.017189
28369 Mycobacteriophage D29 s=0.004258 p=0.113634
9625433_791 Mycobacterium phage L5 Siphoviridae 9234 0.002187 0.028567
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 4213 0.000998 0.021080
9630386_496 Mycobacteriophage D29 Siphoviridae 181 0.000043 0.051065
22091104_693 Virus PhiCh1 Myoviridae 1555 0.000368 0.003287
9630386_496_rc Mycobacteriophage D29 Siphoviridae 81 0.000019 0.051065
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.003248 p=0.208139
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2342 0.000555 0.052060
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 1554 0.000368 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 764 0.000181 0.055619
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 684 0.000162 0.051960
9629935_398 Rhopalosiphum padi virus Dicistroviridae 139 0.000033 0.052060
Family: Herpesviridae
10331 Equine herpesvirus 4 s=0.002144 p=0.617391
9629732_5440 Equid herpesvirus 4 Herpesviridae 2174 0.000515 0.046151
9629732_5441 Equid herpesvirus 4 Herpesviridae 939 0.000222 0.046151
9629732_2109 Equid herpesvirus 4 Herpesviridae 94 0.000022 0.031734
9629732_3507_rc Equid herpesvirus 4 Herpesviridae 46 0.000011 0.036746
9629732_5686 Equid herpesvirus 4 Herpesviridae 29 0.000007 0.044812
Iteration: 2
Family: NA
89463 Sacbrood virus s=0.134461 p=0.000010
9632405_343_rc Sacbrood virus Iflavirus 65439 0.067695 0.063762
9632405_347_rc Sacbrood virus Iflavirus 1545 0.001598 0.049549
9632405_349_rc Sacbrood virus Iflavirus 1344 0.001390 0.042675
9632405_343 Sacbrood virus Iflavirus 483 0.000500 0.063762
9632405_345_rc Sacbrood virus Iflavirus 159 0.000164 0.061405
Family: Picornaviridae
138953 Poliovirus s=0.057154 p=0.003936
9627043_199_rc Human poliovirus 3 Picornaviridae 22866 0.023654 0.014761
9627043_197_rc Human poliovirus 3 Picornaviridae 64623 0.066850 0.004859
9627041_199_rc Human poliovirus 2 Picornaviridae 65426 0.067681 0.003699
12408699_288_rc Poliovirus Picornaviridae 5267 0.005449 0.023661
12408699_179 Poliovirus Picornaviridae 402 0.000416 0.025144
46633 Human echovirus 1 s=0.039068 p=0.024860
21363125_2 Human echovirus 1 Picornaviridae 16735 0.017312 0.016623
9629181_20 Human enterovirus 71 Picornaviridae 4802 0.004968 0.006498
9627719_1_rc Human enterovirus A Picornaviridae 4007 0.004145 0.007480
9629458_14_rc Human echovirus 12 Picornaviridae 2806 0.002903 0.009697
9632987_20_rc Human coxsackievirus B2 Picornaviridae 7023 0.007265 0.003362
106966 Porcine enterovirus B s=0.035140 p=0.025807
9629634_270_rc Porcine enterovirus B Picornaviridae 21515 0.022257 0.023324
9629634_261_rc Porcine enterovirus B Picornaviridae 2265 0.002343 0.024788
9627719_1_rc Human enterovirus A Picornaviridae 4007 0.004145 0.012457
9629181_20 Human enterovirus 71 Picornaviridae 4802 0.004968 0.003936
9629458_14_rc Human echovirus 12 Picornaviridae 2806 0.002903 0.003072
123738 Enterovirus Yanbian 96-83csf s=0.032006 p=0.035889
21363125_2 Human echovirus 1 Picornaviridae 16735 0.017312 0.011270
9629181_20 Human enterovirus 71 Picornaviridae 4802 0.004968 0.008730
9627719_14_rc Human enterovirus A Picornaviridae 3004 0.003108 0.010612
9627719_1_rc Human enterovirus A Picornaviridae 4007 0.004145 0.007311
9629458_14_rc Human echovirus 12 Picornaviridae 2806 0.002903 0.005620
138949 Human enterovirus B s=0.028048 p=0.037762
21363125_2 Human echovirus 1 Picornaviridae 16735 0.017312 0.005556
9629181_20 Human enterovirus 71 Picornaviridae 4802 0.004968 0.011070
9627719_14_rc Human enterovirus A Picornaviridae 3004 0.003108 0.010284
9627719_1_rc Human enterovirus A Picornaviridae 4007 0.004145 0.007145
9629458_14_rc Human echovirus 12 Picornaviridae 2806 0.002903 0.009457
Family: Adenoviridae
129951 Human adenovirus C s=0.021084 p=0.090918
9626158_268 Human adenovirus C Adenoviridae 5845 0.006046 0.026380
9626187_754_rc Human adenovirus type 5 Adenoviridae 4497 0.004652 0.024908
9626187_859_rc Human adenovirus type 5 Adenoviridae 1325 0.001371 0.022130
9626187_759_rc Human adenovirus type 5 Adenoviridae 1656 0.001713 0.016229
9626187_866_rc Human adenovirus type 5 Adenoviridae 284 0.000294 0.023147
Family: Siphoviridae
31757 Mycobacterium phage L5 s=0.020026 p=0.003051
9625433_791 Mycobacterium phage L5 Siphoviridae 9234 0.009553 0.051988
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 4213 0.004358 0.018768
9630386_496 Mycobacteriophage D29 Siphoviridae 181 0.000187 0.017189
9625433_467_rc Mycobacterium phage L5 Siphoviridae 53 0.000055 0.057135
9630386_496_rc Mycobacteriophage D29 Siphoviridae 81 0.000084 0.017189
28369 Mycobacteriophage D29 s=0.013683 p=0.010280
9625433_791 Mycobacterium phage L5 Siphoviridae 9234 0.009553 0.028567
12657854_498_rc Mycobacteriophage Bxb1 Siphoviridae 4213 0.004358 0.021080
9630386_496 Mycobacteriophage D29 Siphoviridae 181 0.000187 0.051065
22091104_693 Virus PhiCh1 Myoviridae 1555 0.001609 0.003287
9630386_496_rc Mycobacteriophage D29 Siphoviridae 81 0.000084 0.051065
Family: Dicistroviridae
66834 Rhopalosiphum padi virus s=0.010422 p=0.029076
9629935_398_rc Rhopalosiphum padi virus Dicistroviridae 2342 0.002423 0.052060
9629935_394_rc Rhopalosiphum padi virus Dicistroviridae 1554 0.001608 0.064086
9629935_392_rc Rhopalosiphum padi virus Dicistroviridae 764 0.000790 0.055619
9629935_396_rc Rhopalosiphum padi virus Dicistroviridae 684 0.000708 0.051960
9629935_398 Rhopalosiphum padi virus Dicistroviridae 139 0.000144 0.052060
Family: Herpesviridae
10331 Equine herpesvirus 4 s=0.006878 p=0.292839
9629732_5440 Equid herpesvirus 4 Herpesviridae 2174 0.002249 0.046151
9629732_5441 Equid herpesvirus 4 Herpesviridae 939 0.000971 0.046151
9629732_2109 Equid herpesvirus 4 Herpesviridae 94 0.000097 0.031734
9629732_3507_rc Equid herpesvirus 4 Herpesviridae 46 0.000048 0.036746
9629732_5686 Equid herpesvirus 4 Herpesviridae 29 0.000030 0.044812
GSM40860
EPREDICT : 2007-03-28 15:50:34 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40860
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40860:GSM40860
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.032450 p=0.008051
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 1503 0.010018 0.036179
9626069_80 Human papillomavirus type 18 Papillomaviridae 1226 0.008172 0.030247
9626069_187_P70_rc Human papillomavirus type 18 Papillomaviridae 841 0.005605 0.035142
9626069_81 Human papillomavirus type 18 Papillomaviridae 789 0.005259 0.031469
9626069_81_rc Human papillomavirus type 18 Papillomaviridae 616 0.004106 0.031469
10593 Human papillomavirus type 45 s=0.011447 p=0.099848
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 1503 0.010018 0.009866
9627356_263_rc Human papillomavirus type 45 Papillomaviridae 240 0.001600 0.036976
9626069_80 Human papillomavirus type 18 Papillomaviridae 1226 0.008172 0.006910
9626069_81 Human papillomavirus type 18 Papillomaviridae 789 0.005259 0.007905
9627356_269 Human papillomavirus type 45 Papillomaviridae 198 0.001320 0.030872
37115 Human papillomavirus type 59 s=0.003797 p=0.132496
9626069_252 Human papillomavirus type 18 Papillomaviridae 268 0.001786 0.030317
9627962_252 Human papillomavirus type 59 Papillomaviridae 157 0.001046 0.051293
9627962_252_rc Human papillomavirus type 59 Papillomaviridae 146 0.000973 0.051293
9626069_252_rc Human papillomavirus type 18 Papillomaviridae 232 0.001546 0.030317
9626069_81 Human papillomavirus type 18 Papillomaviridae 789 0.005259 0.007122
Family: Herpesviridae
10401 Ictalurid herpesvirus 1 s=0.003512 p=0.325434
9626821_1503 Ictalurid herpesvirus 1 Herpesviridae 425 0.002833 0.063848
9626821_872 Ictalurid herpesvirus 1 Herpesviridae 194 0.001293 0.055524
9626821_1503_rc Ictalurid herpesvirus 1 Herpesviridae 118 0.000786 0.063848
9626821_1079_rc Ictalurid herpesvirus 1 Herpesviridae 185 0.001233 0.018926
9626821_4421 Ictalurid herpesvirus 1 Herpesviridae 24 0.000160 0.066924
Family: Baculoviridae
10450 Orgyia pseudotsugata single capsid nuclo s=0.001227 p=0.595558
9630966_5576_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 173 0.001153 0.011710
9626821_1503 Ictalurid herpesvirus 1 Herpesviridae 425 0.002833 0.004149
9630816_4373_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 61 0.000407 0.018918
9630816_4373 Bombyx mori nucleopolyhedrovirus Baculoviridae 44 0.000293 0.018918
9630816_1143_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 212 0.001413 0.003913
Iteration: 2
Family: Herpesviridae
10401 Ictalurid herpesvirus 1 s=0.003517 p=0.325057
9626821_1503 Ictalurid herpesvirus 1 Herpesviridae 425 0.003110 0.063848
9626821_872 Ictalurid herpesvirus 1 Herpesviridae 194 0.001419 0.055524
9626821_1503_rc Ictalurid herpesvirus 1 Herpesviridae 118 0.000863 0.063848
9626821_1079_rc Ictalurid herpesvirus 1 Herpesviridae 185 0.001354 0.018926
9626821_4421 Ictalurid herpesvirus 1 Herpesviridae 24 0.000176 0.066924
Family: Papillomaviridae
211787 Human papillomavirus type 92 s=0.001882 p=0.564640
9627396_107_rc Human papillomavirus type 9 Papillomaviridae 301 0.002202 0.033130
9626498_108_rc Human papillomavirus type 5b Papillomaviridae 106 0.000776 0.011562
9627363_205 Human papillomavirus type 49 Papillomaviridae 102 0.000746 0.008337
9628510_108 Human papillomavirus type 36 Papillomaviridae 15 0.000110 0.019507
9628454_109_rc Human papillomavirus type 20 Papillomaviridae 18 0.000132 0.014944
Family: Baculoviridae
10450 Orgyia pseudotsugata single capsid nuclo s=0.001227 p=0.595558
9630966_5576_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 173 0.001266 0.011710
9626821_1503 Ictalurid herpesvirus 1 Herpesviridae 425 0.003110 0.004149
9630816_4373_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 61 0.000446 0.018918
9630816_4373 Bombyx mori nucleopolyhedrovirus Baculoviridae 44 0.000322 0.018918
9630816_1143_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 212 0.001551 0.003913
GSM40861
EPREDICT : 2007-03-28 15:52:22 : Urisman, et. al, 2005. Genome Biol.
DATA SOURCE : GSM40861
USER WEIGHTS : MV_72worst_medRaw500_badYdens
ARRAY NORMALIZATION : Sum
EMATRIX : 2004-07-22
EMATRIX NORMALIZATION : Quadratic
EMATRIX ENERGY FILTER : 30
ITERATIONS : 2
DISTANCE METRIC : Pearson Uncentered
VECTOR LENGTH : All oligos
OUTPUT : Sort by Distance, 5 families, 5 genomes/family, 5 oligos/genome
ECLUSTER : None
OUTFILE : No
Array: MegaViro:GSM40861:GSM40861
Iteration: 1
Family: Papillomaviridae
10582 Human papillomavirus type 18 s=0.237092 p=0.000031
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 8583 0.020395 0.036179
9626069_269 Human papillomavirus type 18 Papillomaviridae 10593 0.025171 0.028366
9626069_81 Human papillomavirus type 18 Papillomaviridae 8880 0.021101 0.031469
9626069_350_P70_rc Human papillomavirus type 18 Papillomaviridae 6326 0.015032 0.035901
9626069_114_P70 Human papillomavirus type 18 Papillomaviridae 4867 0.011565 0.036179
10593 Human papillomavirus type 45 s=0.103040 p=0.001366
9627356_269 Human papillomavirus type 45 Papillomaviridae 6410 0.015231 0.030872
9626069_269 Human papillomavirus type 18 Papillomaviridae 10593 0.025171 0.012905
9626069_114_P70_rc Human papillomavirus type 18 Papillomaviridae 8583 0.020395 0.009866
9626069_81 Human papillomavirus type 18 Papillomaviridae 8880 0.021101 0.007905
9627356_263_rc Human papillomavirus type 45 Papillomaviridae 1624 0.003859 0.036976
Family: NA
12475 Hepatitis delta virus s=0.050000 p=0.030945
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 16278 0.038680 0.051728
13277517_1201_P70 Hepatitis delta virus Deltavirus 246 0.000585 0.050159
13277517_1511_P70 Hepatitis delta virus Deltavirus 107 0.000254 0.051728
13277517_1385_P70 Hepatitis delta virus Deltavirus 81 0.000192 0.051449
13277517_1255_P70 Hepatitis delta virus Deltavirus 42 0.000100 0.051914
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.020464 p=0.091388
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 3098 0.007361 0.091863
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 982 0.002333 0.091863
12084824_6098_rc Meleagrid herpesvirus 1 Herpesviridae 68 0.000162 0.091863
12084824_5205 Meleagrid herpesvirus 1 Herpesviridae 37 0.000088 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 360 0.000855 0.006175
Family: Baculoviridae
224399 Adoxophyes honmai nucleopolyhedrovirus s=0.015593 p=0.016791
9630966_37_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 2046 0.004862 0.069457
9630966_37 Lymantria dispar nucleopolyhedroviru Baculoviridae 746 0.001773 0.069457
9630816_4373 Bombyx mori nucleopolyhedrovirus Baculoviridae 813 0.001932 0.030009
22091104_693 Virus PhiCh1 Myoviridae 618 0.001468 0.025255
9630816_4373_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 494 0.001174 0.030009
Family: Phycodnaviridae
10506 Paramecium bursaria Chlorella virus 1 s=0.014140 p=0.006562
11693124_5372_rc Paramecium bursaria Chlorella virus Phycodnaviridae 1673 0.003975 0.084852
11693124_9473 Paramecium bursaria Chlorella virus Phycodnaviridae 763 0.001813 0.087348
11693124_5372 Paramecium bursaria Chlorella virus Phycodnaviridae 682 0.001621 0.084852
11693124_9473_rc Paramecium bursaria Chlorella virus Phycodnaviridae 600 0.001426 0.087348
11693124_3079_rc Paramecium bursaria Chlorella virus Phycodnaviridae 53 0.000126 0.113097
Family: Adenoviridae
10537 Canine adenovirus s=0.008149 p=0.133739
9629096_16_rc Canine adenovirus Adenoviridae 1681 0.003994 0.059071
9629096_739_rc Canine adenovirus Adenoviridae 157 0.000373 0.063143
9629096_770_rc Canine adenovirus Adenoviridae 47 0.000112 0.061657
9629096_770 Canine adenovirus Adenoviridae 23 0.000055 0.061657
9629096_671_rc Canine adenovirus Adenoviridae 18 0.000043 0.070597
Iteration: 2
Family: NA
12475 Hepatitis delta virus s=0.053138 p=0.028134
13277517_1511_P70_rc Hepatitis delta virus Deltavirus 16278 0.055703 0.051728
13277517_1201_P70 Hepatitis delta virus Deltavirus 246 0.000842 0.050159
13277517_1511_P70 Hepatitis delta virus Deltavirus 107 0.000366 0.051728
13277517_1385_P70 Hepatitis delta virus Deltavirus 81 0.000277 0.051449
13277517_1255_P70 Hepatitis delta virus Deltavirus 42 0.000144 0.051914
Family: Herpesviridae
37108 Meleagrid herpesvirus 1 s=0.021750 p=0.085510
12084824_5205_rc Meleagrid herpesvirus 1 Herpesviridae 3098 0.010601 0.091863
12084824_6098 Meleagrid herpesvirus 1 Herpesviridae 982 0.003360 0.091863
12084824_6098_rc Meleagrid herpesvirus 1 Herpesviridae 68 0.000233 0.091863
12084824_5205 Meleagrid herpesvirus 1 Herpesviridae 37 0.000127 0.091863
9845300_4288 Rat cytomegalovirus Maastricht Herpesviridae 360 0.001232 0.006175
Family: Baculoviridae
224399 Adoxophyes honmai nucleopolyhedrovirus s=0.016571 p=0.014820
9630966_37_rc Lymantria dispar nucleopolyhedroviru Baculoviridae 2046 0.007001 0.069457
9630966_37 Lymantria dispar nucleopolyhedroviru Baculoviridae 746 0.002553 0.069457
9630816_4373 Bombyx mori nucleopolyhedrovirus Baculoviridae 813 0.002782 0.030009
22091104_693 Virus PhiCh1 Myoviridae 618 0.002115 0.025255
9630816_4373_rc Bombyx mori nucleopolyhedrovirus Baculoviridae 494 0.001690 0.030009
Family: Phycodnaviridae
10506 Paramecium bursaria Chlorella virus 1 s=0.015022 p=0.005688
11693124_5372_rc Paramecium bursaria Chlorella virus Phycodnaviridae 1673 0.005725 0.084852
11693124_9473 Paramecium bursaria Chlorella virus Phycodnaviridae 763 0.002611 0.087348
11693124_5372 Paramecium bursaria Chlorella virus Phycodnaviridae 682 0.002334 0.084852
11693124_9473_rc Paramecium bursaria Chlorella virus Phycodnaviridae 600 0.002053 0.087348
11693124_3079_rc Paramecium bursaria Chlorella virus Phycodnaviridae 53 0.000181 0.113097
Family: Papillomaviridae
10618 Human papillomavirus type 52 s=0.013941 p=0.065463
9627370_239 Human papillomavirus type 52 Papillomaviridae 1997 0.006834 0.052341
9627370_145_rc Human papillomavirus type 52 Papillomaviridae 966 0.003306 0.038651
9627118_51_rc Human papillomavirus type 33 Papillomaviridae 544 0.001862 0.008455
9627370_239_rc Human papillomavirus type 52 Papillomaviridae 34 0.000116 0.052341
9627109_277 Human papillomavirus type 31 Papillomaviridae 70 0.000240 0.011792
10621 Human papillomavirus type 9 s=0.009709 p=0.151943
9627396_107_rc Human papillomavirus type 9 Papillomaviridae 1732 0.005927 0.055952
9627396_171_rc Human papillomavirus type 9 Papillomaviridae 93 0.000318 0.058079
9627396_171 Human papillomavirus type 9 Papillomaviridae 69 0.000236 0.058079
9626498_108_rc Human papillomavirus type 5b Papillomaviridae 224 0.000767 0.012353
9627277_169_rc Human papillomavirus type 15 Papillomaviridae 511 0.001749 0.005176
211787 Human papillomavirus type 92 s=0.009516 p=0.120940
9627396_107_rc Human papillomavirus type 9 Papillomaviridae 1732 0.005927 0.033130
9627284_167_rc Human papillomavirus type 17 Papillomaviridae 716 0.002450 0.013164
9627363_205 Human papillomavirus type 49 Papillomaviridae 724 0.002478 0.008337
9626498_108_rc Human papillomavirus type 5b Papillomaviridae 224 0.000767 0.011562
9628486_105 Human papillomavirus type 24 Papillomaviridae 44 0.000151 0.026502
Family: Adenoviridae
10537 Canine adenovirus s=0.008660 p=0.124215
9629096_16_rc Canine adenovirus Adenoviridae 1681 0.005752 0.059071
9629096_739_rc Canine adenovirus Adenoviridae 157 0.000537 0.063143
9629096_770_rc Canine adenovirus Adenoviridae 47 0.000161 0.061657
9629096_770 Canine adenovirus Adenoviridae 23 0.000079 0.061657
9629096_671_rc Canine adenovirus Adenoviridae 18 0.000062 0.070597